TCONS_00068091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068091
Unique NameTCONS_00068091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068091 ID=TCONS_00068091|Name=TCONS_00068091|organism=Clytia hemisphaerica|type=transcript|length=523bp
GACAGCTGCAATGTTGATGTCGATTTGATGTCTTTAATCTGCTGATTCAC
ATTATGGTGTTGAAGCAACATTGAAATTGTGCTAATCTGATGTATTGGAT
GACATCACTGCCACATAAGCTTTTACATTTTCGTTTATTGATGATTGTAG
TGCTTGAGTTGAGTCTTCAGGCTTCAAAATCTTTGCAAACGATTGTTAAA
ATAACCCAGTGGGATCCACTGGCACCTATTAAAaactaaagcaaaaaaaa
taaatcatagcATGACAAAGGGGTAATCTGGTACTAATATATTAAATGTA
AAGAAAGAATTCAACATAAATTAGTTACTGTAGATCAACTTTTCCTTTAA
TCCTTTTTGGAGGCCAACAAAAATTGTCATGTTGACCAGAATATGTAGAT
GGCGATCTTTGTGTCTTCTGCGTTGTCTGTACTTNTTTGGAGGCCAACAA
AAATTGTCATCTTGACCAGAATATGTAGATGGTGATCTTTGTGTCTTTTG
CGTTGTCTGTACTttcctttggt
Run BLAST on NCBI

transcript from alignment at scaffold_479:30963..31485

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068091 ID=TCONS_00068091|Name=TCONS_00068091|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at scaffold_479:30963..31485 (Clytia hemisphaerica)
accaaaggaaAGTACAGACAACGCAAAAGACACAAAGATCACCATCTACA
TATTCTGGTCAAGATGACAATTTTTGTTGGCCTCCAAANAAGTACAGACA
ACGCAGAAGACACAAAGATCGCCATCTACATATTCTGGTCAACATGACAA
TTTTTGTTGGCCTCCAAAAAGGATTAAAGGAAAAGTTGATCTACAGTAAC
TAATTTATGTTGAATTCTTTCTTTACATTTAATATATTAGTACCAGATTA
CCCCTTTGTCATgctatgatttattttttttgctttagttTTTAATAGGT
GCCAGTGGATCCCACTGGGTTATTTTAACAATCGTTTGCAAAGATTTTGA
AGCCTGAAGACTCAACTCAAGCACTACAATCATCAATAAACGAAAATGTA
AAAGCTTATGTGGCAGTGATGTCATCCAATACATCAGATTAGCACAATTT
CAATGTTGCTTCAACACCATAATGTGAATCAGCAGATTAAAGACATCAAA
TCGACATCAACATTGCAGCTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042513XLOC_042513Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068091-exon-scaffold_479-1491911889:30963..31485TCONS_00068091-exon-scaffold_479-1491911889:30963..31485Clytia hemisphaericaexon
TCONS_00068091-exon-scaffold_479-1510915933:30963..31485TCONS_00068091-exon-scaffold_479-1510915933:30963..31485Clytia hemisphaericaexon
TCONS_00068091-exon-scaffold_479-1575043694:30963..31485TCONS_00068091-exon-scaffold_479-1575043694:30963..31485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_479supercontigscaffold_479:30963..31485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283525	0.165245	0	0.480214	0.739639	0.481615	0.684161	0.894676	0.190423	0.78804	0	0.280106	0	0	0	0	0.0432044	0	0	0.125683	0.109242	0.159853	0	0	2.55376	0.541325	0.473559	0.660983	0.376218	0.158151
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top