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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068090 ID=TCONS_00068090|Name=TCONS_00068090|organism=Clytia hemisphaerica|type=transcript|length=4376bp
gttcactgctagggtacaccattttaaaacgggatttttcgcagtcctag
ctaccaaaccgagaagaTTTTTGTGGCTTTAAGCCAAACccttcaaggtc
attttgataaaatcatcggtttgaagatgtgatttatatagcaaatttta
tagcaaattttcgcttgggatagaagttaaaggtacgtgcacaatatagc
aaaactgcttcgctcataaattcgcttcgcaataaagccgctatagagac
agggtcatAAGAGCCttttaatgccccaaacacattACATAATCCACGgt
ggcacaacacccgccgctgcGTCCCTGCGCAtcgctcttttgttttcctt
ctagttattttAGTGTAAAcagtgccttaataaaatcaaacgatattcgt
cgaacgatcgaacatttttattcgaatcacgaatcgtctgtcgaaatcta
CGATGGCCCCTAtaaggctcaccacgcacttccagttcttataaaatttg
tgaactagaactgtctagggtcatggcccagaaggctcacaaGACACTGG
GCACTTCCGAGTTTTTTTGTGACGAGACTGCACTTCTAAAAATGTTTTAG
AGACGCAAAAGTACCCCTCGAAAAGATAGCCCttctggtcagcaaaatag
atacAGAGTTGTAATAAATgacagcctagactaatgttaatttttctttc
agaaaaaagactataatttgtttaccttttttcctgcagcttcccaacat
ccaagctctccaacatcacaagccgaatgaaattactttcaatttcccgt
agaaattatgcgatgaaaaatccgggggtcgAAGAATGAAGACTTATTAT
TTCCGAGCAAGTTATCTTTGCTTATaacgaaatattacttttcaatatat
atttgctaaatataatgtttgattacaaaaatactttacactgtatttaa
agtttgaaaaagtcgattctaccattctacttagctctttgttttcatgt
ctagCCCTcgtctcaaaagaagtcccagaatcccgagatGTTTGCAGTGg
ggcgttcaaaacaaaggcgtttttatttttccgcccacttagtcacacta
gcgtcccgccaaattgcgtatcaaagattaatgctgcgaaagcactatat
cgtttacttgactctcaagcaagaaaatgcaccgcaaaacttctaaaggg
attcatgaaaaaataacccagtgctttttaatgaaattaacattttcaaa
aactttgagaaattgcctaaaatttgagccatagatgagaaaatttgagc
caagccaaccttgaaaactaatttgaagatcaacttcccaagaaaaagat
ctacgggggaggtggaacccacctagatctgcgcactgccggataggcta
tctcccggaaattttgccggacctcaaacaatgacccatttacatgtgcg
taattgtttttactttagcatNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgacaaggccttaaaaatcg
aagcgctgtctcgggaattgaatgacaaattttggttggttgattttggc
tgctgcacgttttattttgtttccaactttcaagttttaattaatattgt
cttgtaCCTCTTTGTACCTCTTTTTGGCTTTGGCTTGAACAGCTCGTCCA
ACTCGTTGAGTCCGATGCTTCGACATTTCCTTGAGGCTGTTGGAGTCAGC
TTGCCTAAGTAAGGTTAAAATAGTGGGCAAGCAGAGGTTCGTCCGGAACA
GTTGTGAGGAAGGTGTCTAAgtgttttttgaatacttctttggggcagtt
tgacaaatctcttattggtctgggaagggtgttgaataatcgagggcctt
cttgggaaagacttcccctccagatatttttgtgtatgatattgacagct
tttagaTTGCAAATTCTCCCCAATCTCTGATTTATATGGCAGGAAATGCC
TCCTTTACTTTCGTCGTTGCCTTCAATGACATTCCAGGTATAAATTATTT
GATACCGCTCTCTCCGTCTTTCAAGGCTATACAGttttaatgatttgagt
ttttccCAATAATTGAGATGTCTGAGGGATGGAATTACATGTAAGAATGA
TTTCTGAACTTCTTCCAGTTGCTGGACAAGACCACGCTTTCAGGGAGACC
AGAGTTGAGAGCAGTAGTCCAAATGAGGGATTGCTAGTGCACTCCATAAA
GTTATGCActtatatttttacttttttgatttgttcttgGATATGTTTCT
CATAAGTCAACTGAGTGTCTAGGGTGACTCCAAGGTCTTTAACTTCGTTA
TTATTTTCGATTAACGTTGCTGTGTCAGAAAAATAGCGAGAACTTTGCTT
CAGAGCGTCGTTTTTCCCGTAGGCAAGGTGCTCAAATTTAAGACCATTCA
GCTGCATNNGTGTCTAGATCATTTTGTAGATGATAAACATCCTCCAGTTT
GGATATTTCTTTCATCAAACGAGTGTTGTCAGCAAACGATGCCAAAATAG
AATGAAGGATGCTGTTATCGATATCTTGAATCATGATCAGGAACAATAGT
GGTCCCAGCACAGATCCTTGCGGCACACCTGAAATAACATCTGTTTCTGA
GGACAAGTTTACTGAAACTCTCTGTGTTTGATGAGTCAAAAAGGATCTGA
TCCATTCAAGTAGTTTACCGATTATGCCATTTTTCTGAAGCTTGTGTAAC
AAAATGGTATGGTCTACTCTATCAAAAGCTTTACTGAAGTCTAAATAGAT
AACGTCAATATTGTTTCCATTCTCTAGgtaattccaaaaaaatgtagcaA
AATTTTTGCCGCTAGATCTCCTTTAAAATCCGCCTGTCTCTTGGCTTGCG
TTTCCTCttggatgaaaatatttttgaagaggTACATTATTTGAAGATAT
AATGAATATGCATTGTTTGATAAAAGCATCATATTGGGCGTCAGGGTCTG
AATCAAGTGGGTTCAAAATTTTGTGCCAGTCAGTGTCTTTGAAATTTTCA
TTGATGATAGCCCAATTAATTTGATCATAATAGAAGTTGAAACTATCAAT
CAGTGCActgattaaatttttattattgttattactaTAGTTGTTTTCAG
TCATGGAAAAGTTCAGATGGCTTGTAACATCAATGATGAAGTGATCTGAG
AGAGCAGTTGGTGTGCATAGGTATGAAGATTGAATCAGAGTTATTAGTCA
GTAAGAAGTCTAAAATATTGCCATTAGAATGAGTAGGCTTATGGATCATC
TGGTTCAAGTTTAAAATTGAAGtaaaattgtttaaaacatCTAGAAGTTG
TTTGTTGCAACTAATTGATGGTATGTAAGAGTCATTTTTTTTGGTGTGGG
GTATATTGAAATCACCACATAGATAAATATCGGGGGTATTTCCTTCGATT
GAATCGATGATGTCCTGCATTGCTGAGATAAGGTCCAAGAATTCCGGAGC
CGCTGATTTGTGCAGAATATTTGTTGGCTGTCTATTTTTATgttcttgcg
aacttgattcaggtaactctcatccttgttgttgaaatgtatcctgtaga
tgactgcaGTGTGccctaaattattttggttttgctttcaatttcaagca
aggtcttagcaacagggcgggcgtacatagcaacggggctgggtagaaaa
atctaaacatagaattcaaaaaaaataccgatcatcatataaaaaatacc
ccctttatatgtttagtttgttctaccttggtttatgactgaaaatatct
tcaaaaaacctttgTCCGCTATCAGGCCGCGCAGTAATCTTTTGCCCGCT
TCAATTAgctaatgaataagagaggtgggCTTAGCTAAGCTGTGCTCGTG
GGCGATaaatttacttacttacttggaATACTTGGAAGTGCTTTAGATGA
TCTTCCATCTattattgatttgatgtttgatcGAGTTGGATGCAGCATTT
GTTGTTGCACCTGGAACAGAAGGTTCATCCGGAACAGAAACAAGGAACTT
GTCTAGCTTCTTTTTGAATTCTAGCACAGTGGCATCCACTTAAATTCCTC
AATTCTTTAGGGAGGGAGTTGAACAAGATTGGCCCACAAGTTGATAAGAA
TTTATGTCGGATTGACTGTAGGGCAACTGATGTTCCTGTGATTCGGGCTT
TCACAAAGCACAATCTACCAAGTCTAGGTTGGAAAACAGATCGTAATTCG
TCTGACTGGTTGATATTAGGCACAAGGTTTTCAAGGATCTTCCACGTGTA
GATGATCATGTATCTTTCACGTCTTCTTTCTAGCGAATAAAGCTTAAATG
CCTTCAATCTTGACCAGTATGATTTT Run BLAST on NCBI protein sequence of TCONS_00068090-protein >TCONS_00068090-protein ID=TCONS_00068090-protein|Name=TCONS_00068090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
KSYWSRLKAFKLYSLERRRERYMIIYTWKILENLVPNINQSDELRSVFQP
RLGRLCFVKARITGTSVALQSIRHKFLSTCGPILFNSLPKELRNLSGCHC
ARIQKEARQVPCFCSG Run BLAST on NCBI transcript from alignment at scaffold_479:14185..18560 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068090 ID=TCONS_00068090|Name=TCONS_00068090|organism=Clytia hemisphaerica|type=transcript|length=4376bp|location=Sequence derived from alignment at scaffold_479:14185..18560 (Clytia hemisphaerica)
AAAATCATACTGGTCAAGATTGAAGGCATTTAAGCTTTATTCGCTAGAAA
GAAGACGTGAAAGATACATGATCATCTACACGTGGAAGATCCTTGAAAAC
CTTGTGCCTAATATCAACCAGTCAGACGAATTACGATCTGTTTTCCAACC
TAGACTTGGTAGATTGTGCTTTGTGAAAGCCCGAATCACAGGAACATCAG
TTGCCCTACAGTCAATCCGACATAAATTCTTATCAACTTGTGGGCCAATC
TTGTTCAACTCCCTCCCTAAAGAATTGAGGAATTTAAGTGGATGCCACTG
TGCTAGAATTCAAAAAGAAGCTAGACAAGTTCCTTGTTTCTGTTCCGGAT
GAACCTTCTGTTCCAGGTGCAACAACAAATGCTGCATCCAACTCgatcaa
acatcaaatcaataatAGATGGAAGATCATCTAAAGCACTTCCAAGTATt
ccaagtaagtaagtaaatttATCGCCCACGAGCACAGCTTAGCTAAGccc
acctctcttattcattagcTAATTGAAGCGGGCAAAAGATTACTGCGCGG
CCTGATAGCGGAcaaaggttttttgaagatattttcagtcataaaccaag
gtagaacaaactaaacatataaagggggtattttttatatgatgatcggt
attttttttgaattctatgtttagatttttctacccagccccgttgctat
gtacgcccgccctgttgctaagaccttgcttgaaattgaaagcaaaacca
aaataatttagggCACACtgcagtcatctacaggatacatttcaacaaca
aggatgagagttacctgaatcaagttcgcaagaacATAAAAATAGACAGC
CAACAAATATTCTGCACAAATCAGCGGCTCCGGAATTCTTGGACCTTATC
TCAGCAATGCAGGACATCATCGATTCAATCGAAGGAAATACCCCCGATAT
TTATCTATGTGGTGATTTCAATATACCCCACACCAAAAAAAATGACTCTT
ACATACCATCAATTAGTTGCAACAAACAACTTCTAGatgttttaaacaat
tttaCTTCAATTTTAAACTTGAACCAGATGATCCATAAGCCTACTCATTC
TAATGGCAATATTTTAGACTTCTTACTGACTAATAACTCTGATTCAATCT
TCATACCTATGCACACCAACTGCTCTCTCAGATCACTTCATCATTGATGT
TACAAGCCATCTGAACTTTTCCATGACTGAAAACAACTAtagtaataaca
ataataaaaatttaatcagTGCACTGATTGATAGTTTCAACTTCTATTAT
GATCAAATTAATTGGGCTATCATCAATGAAAATTTCAAAGACACTGACTG
GCACAAAATTTTGAACCCACTTGATTCAGACCCTGACGCCCAATATGATG
CTTTTATCAAACAATGCATATTCATTATATCTTCAAATAATGTAcctctt
caaaaatattttcatccaaGAGGAAACGCAAGCCAAGAGACAGGCGGATT
TTAAAGGAGATCTAGCGGCAAAAATTTtgctacatttttttggaattacC
TAGAGAATGGAAACAATATTGACGTTATCTATTTAGACTTCAGTAAAGCT
TTTGATAGAGTAGACCATACCATTTTGTTACACAAGCTTCAGAAAAATGG
CATAATCGGTAAACTACTTGAATGGATCAGATCCTTTTTGACTCATCAAA
CACAGAGAGTTTCAGTAAACTTGTCCTCAGAAACAGATGTTATTTCAGGT
GTGCCGCAAGGATCTGTGCTGGGACCACTATTGTTCCTGATCATGATTCA
AGATATCGATAACAGCATCCTTCATTCTATTTTGGCATCGTTTGCTGACA
ACACTCGTTTGATGAAAGAAATATCCAAACTGGAGGATGTTTATCATCTA
CAAAATGATCTAGACACNNATGCAGCTGAATGGTCTTAAATTTGAGCACC
TTGCCTACGGGAAAAACGACGCTCTGAAGCAAAGTTCTCGCTATTTTTCT
GACACAGCAACGTTAATCGAAAATAATAACGAAGTTAAAGACCTTGGAGT
CACCCTAGACACTCAGTTGACTTATGAGAAACATATCcaagaacaaatca
aaaaagtaaaaatataagTGCATAACTTTATGGAGTGCACTAGCAATCCC
TCATTTGGACTACTGCTCTCAACTCTGGTCTCCCTGAAAGCGTGGTCTTG
TCCAGCAACTGGAAGAAGTTCAGAAATCATTCTTACATGTAATTCCATCC
CTCAGACATCTCAATTATTGggaaaaactcaaatcattaaaaCTGTATAG
CCTTGAAAGACGGAGAGAGCGGTATCAAATAATTTATACCTGGAATGTCA
TTGAAGGCAACGACGAAAGTAAAGGAGGCATTTCCTGCCATATAAATCAG
AGATTGGGGAGAATTTGCAAtctaaaagctgtcaatatcatacacaaaaa
tatctggaggggaagtctttcccaagaaggccctcgattattcaacaccc
ttcccagaccaataagagatttgtcaaactgccccaaagaagtattcaaa
aaacacTTAGACACCTTCCTCACAACTGTTCCGGACGAACCTCTGCTTGC
CCACTATTTTAACCTTACTTAGGCAAGCTGACTCCAACAGCCTCAAGGAA
ATGTCGAAGCATCGGACTCAACGAGTTGGACGAGCTGTTCAAGCCAAAGC
CAAAAAGAGGTACAAAGAGGtacaagacaatattaattaaaacttgaaag
ttggaaacaaaataaaacgtgcagcagccaaaatcaaccaaccaaaattt
gtcattcaattcccgagacagcgcttcgatttttaaggccttgtcNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNatgctaaagtaaaaacaattacgcacatgtaaatgggtcattgtt
tgaggtccggcaaaatttccgggagatagcctatccggcagtgcgcagat
ctaggtgggttccacctcccccgtagatctttttcttgggaagttgatct
tcaaattagttttcaaggttggcttggctcaaattttctcatctatggct
caaattttaggcaatttctcaaagtttttgaaaatgttaatttcattaaa
aagcactgggttattttttcatgaatccctttagaagttttgcggtgcat
tttcttgcttgagagtcaagtaaacgatatagtgctttcgcagcattaat
ctttgatacgcaatttggcgggacgctagtgtgactaagtgggcggaaaa
ataaaaacgcctttgttttgaacgcccCACTGCAAACatctcgggattct
gggacttcttttgagacgAGGGctagacatgaaaacaaagagctaagtag
aatggtagaatcgactttttcaaactttaaatacagtgtaaagtattttt
gtaatcaaacattatatttagcaaatatatattgaaaagtaatatttcgt
tATAAGCAAAGATAACTTGCTCGGAAATAATAAGTCTTCATTCTTcgacc
cccggatttttcatcgcataatttctacgggaaattgaaagtaatttcat
tcggcttgtgatgttggagagcttggatgttgggaagctgcaggaaaaaa
ggtaaacaaattatagtcttttttctgaaagaaaaattaacattagtcta
ggctgtcATTTATTACAACTCTgtatctattttgctgaccagaaGGGCTA
TCTTTTCGAGGGGTACTTTTGCGTCTCTAAAACATTTTTAGAAGTGCAGT
CTCGTCACAAAAAAACTCGGAAGTGCCCAGTGTCttgtgagccttctggg
ccatgaccctagacagttctagttcacaaattttataagaactggaagtg
cgtggtgagccttaTAGGGGCCATCGtagatttcgacagacgattcgtga
ttcgaataaaaatgttcgatcgttcgacgaatatcgtttgattttattaa
ggcactgTTTACACTaaaataactagaaggaaaacaaaagagcgaTGCGC
AGGGACgcagcggcgggtgttgtgccacCGTGGATTATGTaatgtgtttg
gggcattaaaaGGCTCTTatgaccctgtctctatagcggctttattgcga
agcgaatttatgagcgaagcagttttgctatattgtgcacgtacctttaa
cttctatcccaagcgaaaatttgctataaaatttgctatataaatcacat
cttcaaaccgatgattttatcaaaatgaccttgaaggGTTTGGCTTAAAG
CCACAAAAAtcttctcggtttggtagctaggactgcgaaaaatcccgttt
taaaatggtgtaccctagcagtgaac Coding sequence (CDS) from alignment at scaffold_479:14185..18560 >TCONS_00068090 ID=TCONS_00068090|Name=TCONS_00068090|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_479:14185..18560 (Clytia hemisphaerica)
AAATCATACTGGTCAAGATTGAAGGCATTTAAGCTTTATTCGCTAGAAAG
AAGACGTGAAAGATACATGATCATCTACACGTGGAAGATCCTTGAAAACC
TTGTGCCTAATATCAACCAGTCAGACGAATTACGATCTGTTTTCCAACCT
AGACTTGGTAGATTGTGCTTTGTGAAAGCCCGAATCACAGGAACATCAGT
TGCCCTACAGTCAATCCGACATAAATTCTTATCAACTTGTGGGCCAATCT
TGTTCAACTCCCTCCCTAAAGAATTGAGGAATTTAAGTGGATGCCACTGT
GCTAGAATTCAAAAAGAAGCTAGACAAGTTCCTTGTTTCTGTTCCGGATG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068090-exon-scaffold_479-1491911889:14185..18560 | TCONS_00068090-exon-scaffold_479-1491911889:14185..18560 | Clytia hemisphaerica | exon |
| TCONS_00068090-exon-scaffold_479-1510915933:14185..18560 | TCONS_00068090-exon-scaffold_479-1510915933:14185..18560 | Clytia hemisphaerica | exon |
| TCONS_00068090-exon-scaffold_479-1575043694:14185..18560 | TCONS_00068090-exon-scaffold_479-1575043694:14185..18560 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_479 | supercontig | scaffold_479:14185..18560 . |
Blast
The following BLAST results are available for this feature:
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