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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068089 ID=TCONS_00068089|Name=TCONS_00068089|organism=Clytia hemisphaerica|type=transcript|length=358bp
agGTCTCTATTGTAGCGGTTGGGTGAAACACGGTCCAGTTGGTGTTATCG
TTACTACCATGAACGAAGCGTTTGCCACAGCGGAAACCATCGTTAAGGAT
TTGAACGCAGGTGCAGTGAACCAGGAAACAAACATCTCAGATGTTGGTGA
ATTGTTAAGAGGAAGAGGAGTGAATTTCGTATCATATGAAGATTACCAGA
AGATTGATTTGGAAGAAATTTGGCGAGGAAATTTATAGAGAACAAAGAGT
TATTACAAGTTCAGACAAAAAAAGTTCTTGTCAAGTTCATTGTGTGGCAA
TTTTCCAAGGTATGTTAATTAGTATTCTCattagattttagaattttagt
TTTGTTGC Run BLAST on NCBI transcript from alignment at scaffold_479:106195..109346- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068089 ID=TCONS_00068089|Name=TCONS_00068089|organism=Clytia hemisphaerica|type=transcript|length=3152bp|location=Sequence derived from alignment at scaffold_479:106195..109346- (Clytia hemisphaerica)
AGGTCTCTATTGTAGCGGTTGGGTGAAACACGGTCCAGTTGGTGTTATCG
TTACTACCATGAACGAAGCGTTTGCCACAGCGGAAACCATCGTTAAGGAT
TTGAACGCAGGTGCAGTGAACCAGGAAACAAACATCTCAGATGTTGGTGA
ATTGTTAAGAGGAAGAGGTATGTCGCCAATTAGTAGCTAATTGATATAAT
TGTTGAGTTAATTAGTTGCATTAGAGTAATATTGGTGTTATCAATAAAAT
CTTTTCAGGATTACTTAGCCATGACGTTTGAAGAATAATCACGAAGGGCT
AGAGTTAGACGATGCTATCGTCCGTTAGTGGAATAAAAAACGCAGGAGAA
TACATATGCGTAGAGTTTATAACCATCACGGCGGTTTACGGTTTTTTTTT
AAATGTTGGTTTGCCAACAAGAGGTGGTCGGTCCACTCGGAACAAAATTT
TCTTTTGACGATTTATGAAAGTTCTGTTTACATTTATAGGTAATTCTAAA
ATGAAATTAGAAGAGCTAAAAGGGAATTCGCGATTCTTAAGCTTAAGATA
GAACGAGACAGGAACAATAATAAAGGTTTTGATTTGAAGAAAAAACATTC
TACTTTGAAATGGCAATGAATTTTATTGGGTCGGCACATTTCGAGATATA
GTCAGTCGGGTGACGGCAAACCAATATTTTTTAAGTTCATCCCAAACGCT
GGATAGAAAGTAACATTCACCAGCTAATGTATCGAGTGGCAGACCCATCT
TTTATTTATATAGAAACAATGCGGACCTTATACGTAACAAAAGAAAATAT
CCTGTCGTTCAAAATGCAGATCAAATGTTTTCTTTTTAAATAAGAGTGAT
ATCGTTTGCTTACTCATCAATTTTGATTAACAAGCTTTTTCACGTTGGTT
TGACACGGATGTGGAGCAAAATTGGTCAGAAATGGAAAAGAAAAACATTT
TTTTGCTTATATCAGCACAATATATCAATAGACAGACACTGTCCTGATAT
GAAATATGTGTCTGATATGAAACGGGAACACTTATGTAAAAATCCTGTTT
CGATAATTCTTTGCTTTGGAAAGGTTGACAAATTGTCTTTTACTTTTTGC
AGGAGTGAATTTCATCACTCAAAATAACATTTTTATTGATTTTTTATTAC
TTTTATTACCCCTGTTTTTAATTATCTAATTATCTCATTTTTCTAAGAAA
TTTTTTAACTTTTACACCGCGCAGATTTTTTTTCACATACAGATCATTTC
TCTTGTACATTTGAACAAGTGCAGAAGCACGAAACTTTAAGTTATGTACT
GAAAGAATATTATTGAAAGAAAACTTTTACTTTTTGCAGGAGTGAATTTC
GTATCATATGAAGATTACCAGAAGATTGATTTGGAAGAAATTTGGCGAGG
TAAACAATCTTCAAAACCGAGAGAAAAAATTGTCGACACGAGTGAAATGT
TAGATTTTGCTTCACACGGTGAAAAAAGCTAGTATCTGCTTATAACCTAT
TTTAGAAAATTTCAATAAATTTCTTCTCTGGTCACAATGATAAACGCTCA
GCATTTACTTTTTGGGCCTACCTGGAGGTCCTATAAATTAACCTTTGTTC
GTCCGTCTGTCCGTCCGTCCGTCTGTTACCAGCTTTTCTCGAGATTGGCT
CATTAGTTTTTTCTGATTTTTGGCACAAAGATGCAAAATGGCAATGCCCA
AAATGTGACGGAGCCCGATTTTCGAAAAAATATGCCGGAAAAACCGGTTT
TTTGACATTTTCTCGAGATTTCATCATTAGTTTTTTCTGATTTTTTGCTT
AAAGATGCGTATTAACAATGCCCAAAACATGACCGGGTCCGATTTTTGAG
AACAAATTTTTTCCAGCCGAAAATACCGGAAATATGCCGGAAATCACCGT
TTTTCTGAATTTTCATTAGACTTTTTTCTTATAATTGGTTGTTTTTTCAT
TCAAAAACATTATTAATAGCAATGCCCACCATCAAGCATGTTTCAATTTT
CAATAAAATTGATTTTTGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTC
GCCGGAAAGACAGTATTTCTTGAATTTCTCGAGCTGTACTTTATATTTTT
TTATGAAATTTTGCACACTGATGCAAAATGACAATACCTAAAATGTGAAA
GAGGTATTTTCGATAAACATTTTTTTCCGGCTGAAAATGCCGGGAATATG
CCGGATAAACCGGTTTTTTGACATTTTCTCGAATTTTCATCCTTAGTTTT
TTCTGATTTTTTGCAGAAAGATGCGTATGCGCAATACTCAAAACATGACA
GAAAAATGCCGAAAATGCCGGAAATCGCCGTTTTTGTTTTCTAGAAACCT
TCTTTATTAAGCTGTGCGTTTTTCTGATAGTGTATTGTTTTTATAAAAAA
AACGCCTTCAATAAATTTTTTTTTTTCATAAGTCTTTTTCAATAGTATTG
ATAATTTCTACCAATAGATATGCTTTCATTTTATATATTTTTGTATTTTG
ACCAGTTATGTCTTATTTGTTTCATTGTTTCAATGTTCATTGGTTAGTTT
TGGTAACCAGGTAGGTCCATAAAAGTATCACTTGTTTAGATATTTTTGAG
GGCTTACATAACCGACACAGTCAACTCTCTCTAATTCGAATTTTTCTGTA
ATTCGAACAAAAACATTAGTCACCTCAGCTGGAGAGTTGTATAAATTACT
CTGTATAAATTACTCTCTGTAATTCTGGAGCTTTGGAAACTTTTGTAAAA
AATTTTCCTTACAAAAGATTATCCAAAATTATTTTATAATTTTTTTTTAC
ATTAATGTTTCAGAATTTATTGTTATCCTGTGCGTGAATTTTACATTATA
AATACTTCATTATTTTCATAGGAAATTTATAGAGAACAAAGAGTTATTAC
AAGTTCAGACAAAAAAAGTTCTTGTCAAGTTCATTGTGTGGCAATTTTCC
AAGGTATGTTAATTAGTATTCTCATTAGATTTTAGAATTTTAGTTTTGTT
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068089-exon-scaffold_479-1575043694:109180..109346 | TCONS_00068089-exon-scaffold_479-1575043694:109180..109346 | Clytia hemisphaerica | exon |
| TCONS_00068089-exon-scaffold_479-1575043694:107948..108007 | TCONS_00068089-exon-scaffold_479-1575043694:107948..108007 | Clytia hemisphaerica | exon |
| TCONS_00068089-exon-scaffold_479-1575043694:106195..106325 | TCONS_00068089-exon-scaffold_479-1575043694:106195..106325 | Clytia hemisphaerica | exon |
| TCONS_00068089-exon-scaffold_479-1510915933:109180..109346 | TCONS_00068089-exon-scaffold_479-1510915933:109180..109346 | Clytia hemisphaerica | exon |
| TCONS_00068089-exon-scaffold_479-1510915933:107948..108007 | TCONS_00068089-exon-scaffold_479-1510915933:107948..108007 | Clytia hemisphaerica | exon |
| TCONS_00068089-exon-scaffold_479-1510915933:106195..106325 | TCONS_00068089-exon-scaffold_479-1510915933:106195..106325 | Clytia hemisphaerica | exon |
| TCONS_00068089-exon-scaffold_479-1491911889:109180..109346 | TCONS_00068089-exon-scaffold_479-1491911889:109180..109346 | Clytia hemisphaerica | exon |
| TCONS_00068089-exon-scaffold_479-1491911889:107948..108007 | TCONS_00068089-exon-scaffold_479-1491911889:107948..108007 | Clytia hemisphaerica | exon |
| TCONS_00068089-exon-scaffold_479-1491911889:106195..106325 | TCONS_00068089-exon-scaffold_479-1491911889:106195..106325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_479 | supercontig | scaffold_479:106195..109346 - |
Blast
BLAST of TCONS_00068089 vs. Swiss-Prot (Human)
Match: ADRO (NADPH:::adrenodoxin oxidoreductase, mitochondrial OS=Homo sapiens GN=FDXR PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 3.308e-18 Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 2
Query: 2 GLYCSGWVKHGPVGVIVTTMNEAFATAETIVKDLNAGAV--NQETNISDVGELLRGRGVNFVSYEDYQKIDLEEIWRG 229
GLYCSGWVK GP GVI TTM ++F T + +++DL AG + + + LL RGV VS+ D++K+D EE+ RG
Sbjct: 392 GLYCSGWVKRGPTGVIATTMTDSFLTGQMLLQDLKAGLLPSGPRPGYAAIQALLSSRGVRPVSFSDWEKLDAEEVARG 469
The following BLAST results are available for this feature:
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