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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068087 ID=TCONS_00068087|Name=TCONS_00068087|organism=Clytia hemisphaerica|type=transcript|length=1458bp
TATTCAAAATATTAACATTCTAATTATTTGTTTTGCAACACCGAGGGAAG
AGTTACTAGACGCTTTCTGCTCCAACCGATACTTGAATCCAATTTCTTTA
TGGATAAGAAATTTTCTGGAATTTATATACATTATTTTGAATACTGTCCT
GCTCCAAGTTAATGAACCGAAGTTTAAATCCAAGTTATTGgtgaatgaaa
actttttggaaTTTATTTGCCATAGATGCTTACTCCACGTTAATTAACCG
AAGTTTGAATCCAAGTTTTTGTGGATAAAACTCTTTTGGAATTTATTTAC
CAATTTAATGGATTGGGTCATGAATTATTTTGAACTTATGCATGCTGTCC
CTACAAGTTATCAATAATAGTTAATCAACCGATGTCTGAATCAAAGTTAC
GTGTGCATgaaaactttctattttttggaatttatttGCCACAATGGAAT
GGTTTATGACTTATCTTGAACTTTTGAAGGATGTCCCTAATCTATGGATG
TATTGTTAGTTTCCTTTTCCTAAGTACGAAACAGATCTTCGTACAGCTTT
CTCCGCGTTAATTAACCGAAGTTTGAATCCAAGTTTTTGTGGATAAAACT
CTTTTGGAATTTATTTACCAATTTAATGGATTGGGTCATGAATTATTTGG
AACTTATGTATGCTGTCCCTACAAGTTATCAATAATATAGTTAATCAACC
GATGTCTGAATCAAAGTTACGTGTGCATgaaaactttctattttttggaa
tttatttGCCACAATGAAATGGTTTATGACTTATCTTGAACTTTTGAAGG
ATGTCCCTAATCTATGGATGTATTGTTAGTTTCCTTTTCCCAAGTACGAA
ACAGATCTTCAATTAACACACGATATCCACCCGATTTCACAGTCGAATCG
AGTCCGAGCTCTTCGTCTGTTTTTGAAAGAAGTCTTTTCCACATCAAAGT
CATAGTATATCTCCTGATCGTCTATCCATCCATCATCATAACCAGCAGCC
ATCTGAATTTCAAACATTATTCCAACAGCCTTTCTCCATTTCTCTTCACA
AATAAATTGATGGACGTGATTGACGTGAAATTTGCAATAGATTTCTTGGT
CCTTTTTATCCATCCATCGTCGTAACCAGCAGCCATCTGAATTTCAAACA
TGATTCCAACAGCCTTTCTCCATTTCTCTTTGTCCGTTTTGTAAAGAAGA
ActcattttttgcttattttgaacgCAATTCACAATCACAAGTAGGAAAT
TTAGATATCTTTTTTAGGAATCCTAATCCCCTGAGCCTGTAATTTTGATC
TAGTTCaagcattttgaaatttcgtgGTTGTAGGATTTTGAACCATAATC
CCtaattcttttttagaaattgcCCAGCTTTTTGGTAATCTTGGGAGCTA
TGGATAAcgagttttttttattgttacctcctttttactttttataattc
AAAGATTG Run BLAST on NCBI transcript from alignment at scaffold_479:123643..125770+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068087 ID=TCONS_00068087|Name=TCONS_00068087|organism=Clytia hemisphaerica|type=transcript|length=2128bp|location=Sequence derived from alignment at scaffold_479:123643..125770+ (Clytia hemisphaerica)
TATTCAAAATATTAACATTCTAATTATTTGTTTTGCAACACCGAGGGAAG
AGTTACTAGACGCTTTCTGCTCCAACCGATACTTGAATCCAATTTCTTTA
TGGATAAGAAATTTTCTGGAATTTATATACATTATTTTGAATACTGTCCT
GCTCCAAGTTAATGAACCGAAGTTTAAATCCAAGTTATTGgtgaatgaaa
actttttggaaTTTATTTGCCATAGATGCTTACTCCACGTTAATTAACCG
AAGTTTGAATCCAAGTTTTTGTGGATAAAACTCTTTTGGAATTTATTTAC
CAATTTAATGGATTGGGTCATGAATTATTTTGAACTTATGCATGCTGTCC
CTACAAGTTATCAATAATAGTTAATCAACCGATGTCTGAATCAAAGTTAC
GTGTGCATgaaaactttctattttttggaatttatttGCCACAATGGAAT
GGTTTATGACTTATCTTGAACTTTTGAAGGATGTCCCTAATCTATGGATG
TATTGTTAGTTTCCTTTTCCTAAGTACGAAACAGATCTTCGTACAGCTTT
CTCCGCGTTAATTAACCGAAGTTTGAATCCAAGTTTTTGTGGATAAAACT
CTTTTGGAATTTATTTACCAATTTAATGGATTGGGTCATGAATTATTTGG
AACTTATGTATGCTGTCCCTACAAGTTATCAATAATATAGTTAATCAACC
GATGTCTGAATCAAAGTTACGTGTGCATgaaaactttctattttttggaa
tttatttGCCACAATGAAATGGTTTATGACTTATCTTGAACTTTTGAAGG
ATGTCCCTAATCTATGGATGTATTGTTAGTTTCCTTTTCCCAAGTACGAA
ACAGATCTTCAATTAACACACGATATCCACCCGATTTCACAGTCGAATCG
AGTCCGAGCTCTTCGTCTGTTTTTGAAAGAAGTCTTTTCCACATCAAAGT
CATAGTATATCTCCTGATCGTCTATCCATCCATCATCATAACCAGCAGCC
ATCTGAATTTCAAACATGATTCCAACAGCCTTTCTCCATTTCTCTTCACA
AATAAATTGATGGACGTGATTGACGTGAAATTTGCAATAGATTTCTTGGT
CCTTTTTATCCATCCATCGTCGTAACCAGCAGCCATCTGAATTTCAAACA
TTATTCCAACAGCCTTTCTCCATTTCTCTTCACAAATAAATTGATGGACG
TGATTGACGTGAAATTTGCAATAGATTTCTTGGTCCTTTTTATCCATCCA
TCGTCGTAACCAGCAGCCATCTGAATTTCAAACATTATTCCAACAGCCTT
TCTCCATTTCTCTTCACAAATAAATTGATGGACGTGATTGACGTGAAATT
TGCAATAGATTTCTTGGTCCTTTTTATCCATCCATCGTCGTAACCAGCAG
CCATCTGAATTTCAAACATTATTCCAACAGCCTTTCTCCATTTCTCTTCA
CAAATAAATTGATGGACGTGATTGACGTGAAATTTGCAATAGATTTCTTG
GTCCTTTTTATCCATCCATCGTCGTAACCAGCAGCCATCTGAATTTCAAA
CATTATTCCAACAGCCTTTCTCCATTTCTCTTCACAAATAAATTGATGGA
CGTGATTGACGTGAAATTTGCAATAGATTTCTTGGTCCTTTTTATCCATC
CATCGTCGTAACCAGCAGCCATCTGAATTTCAAACATTATTCCAACAGCC
TTTCTCCATTTCTCTTCACAAATAAATTGATGGACGTGATTGACGTGAAA
TTTGCAATAGATTTCTTGGTCCTTTTTATCCATCCATCGTCGTAACCAGC
AGCCATCTGAATTTCAAACATGATTCCAACAGCCTTTCTCCATTTCTCTT
TGTCCGTTTTGTAAAGAAGAActcattttttgcttattttgaacgCAATT
CACAATCACAAGTAGGAAATTTAGATATCTTTTTTAGGAATCCTAATCCC
CTGAGCCTGTAATTTTGATCTAGTTCaagcattttgaaatttcgtgGTTG
TAGGATTTTGAACCATAATCCCtaattcttttttagaaattgcCCAGCTT
TTTGGTAATCTTGGGAGCTATGGATAAcgagttttttttattgttacctc
ctttttactttttataattcAAAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068087-exon-scaffold_479-1491911889:123643..124657 | TCONS_00068087-exon-scaffold_479-1491911889:123643..124657 | Clytia hemisphaerica | exon |
| TCONS_00068087-exon-scaffold_479-1510915933:123643..124657 | TCONS_00068087-exon-scaffold_479-1510915933:123643..124657 | Clytia hemisphaerica | exon |
| TCONS_00068087-exon-scaffold_479-1575043694:123643..124657 | TCONS_00068087-exon-scaffold_479-1575043694:123643..124657 | Clytia hemisphaerica | exon |
| TCONS_00068087-exon-scaffold_479-1491911889:125328..125770 | TCONS_00068087-exon-scaffold_479-1491911889:125328..125770 | Clytia hemisphaerica | exon |
| TCONS_00068087-exon-scaffold_479-1510915933:125328..125770 | TCONS_00068087-exon-scaffold_479-1510915933:125328..125770 | Clytia hemisphaerica | exon |
| TCONS_00068087-exon-scaffold_479-1575043694:125328..125770 | TCONS_00068087-exon-scaffold_479-1575043694:125328..125770 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_479 | supercontig | scaffold_479:123643..125770 + |
Blast
The following BLAST results are available for this feature:
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