TCONS_00068086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068086
Unique NameTCONS_00068086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068086 ID=TCONS_00068086|Name=TCONS_00068086|organism=Clytia hemisphaerica|type=transcript|length=2703bp
ATTAAAGAAATTGTCACGTGATACCTTTTGTCTCGAAAAAGAATTCTTTG
TTATTCAAAATATTAACATTCTAATTATTTGTTTTGCAACACCGAGGGAA
GAGTTACTAGACGCTTTCTGCTCCAACCGATACTTGAATCCAATTTCTTT
ATGGATAAGAAATTTTCTGGAATTTATATACATTATTTTGAATACTGTCC
TGCTCCAAGTTAATGAACCGAAGTTTAAATCCAAGTTATTGgtgaatgaa
aactttttggaaTTTATTTGCCATAGATGCTTACTCCACGTTAATTAACC
GAAGTTTGAATCCAAGTTTTTGTGGATAAAACTCTTTTGGAATTTATTTA
CCAATTTAATGGATTGGGTCATGAATTATTTTGAACTTATGCATGCTGTC
CCTACAAGTTATCAATAATAGTTAATCAACCGATGTCTGAATCAAAGTTA
CGTGTGCATgaaaactttctattttttggaatttatttGCCACAATGGAA
TGGTTTATGACTTATCTTGAACTTTTGAAGGATGTCCCTAATCTATGGAT
GTATTGTTAGTTTCCTTTTCCTAAGTACGAAACAGATCTTCGTACAGCTT
TCTCCGCGTTAATTAACCGAAGTTTGAATCCAAGTTTTTGTGGATAAAAC
TCTTTTGGAATTTATTTACCAATTTAATGGATTGGGTCATGAATTATTTG
GAACTTATGTATGCTGTCCCTACAAGTTATCAATAATATAGTTAATCAAC
CGATGTCTGAATCAAAGTTACGTGTGCATgaaaactttctattttttgga
atttatttGCCACAATGAAATGGTTTATGACTTATCTTGAACTTTTGAAG
GATGTCCCTAATCTATGGATGTATTGTTAGTTTCCTTTTCCCAAGTACGA
AACAGATCTTCAATTAACACACGATATCCACCCGATTTCACAGTCGAATC
GAGTCCGAGCTCTTCGTCTGTTTTTGAAAGAAGTCTTTTCCACATCAAAG
TCATAGTATATCTCCTGATCGTCTATCCATCCATCATCATAACCAGCAGC
CATCTGAATTTCAAACATGATTCCAACAGCCTTTCTCCATTTCTCTTCAC
AAATAAATTGATGGACGTGATTGACGTGAAATTTGCAATAGATTTCTTGG
TCCTTTTTATCCATCCATCGTCGTAACCAGCAGCCATCTGAATTTCAAAC
ATTATTCCAACAGCCTTTCTCCATTTCTCTTCACAAATAAATTGATGGAC
GTGATTGACGTGAAATTTGCAATAGATTTCTTGGTCCTTTTTATCCATCC
ATCGTCGTAACCAGCAGCCATCTGAATTTCAAACATTATTCCAACAGCCT
TTCTCCATTTCTCTTCACAAATAAATTGATGGACGTGATTGACGTGAAAT
TTGCAATAGATTTCTTGGTCCTTTTTATCCATCCATCGTCGTAACCAGCA
GCCATCTGAATTTCAAACATTATTCCAACAGCCTTTCTCCATTTCTCTTC
ACAAATAAATTGATGGACGTGATTGACGTGAAATTTGCAATAGATTTCTT
GGTCCTTTTTATCCATCCATCGTCGTAACCAGCAGCCATCTGAATTTCAA
ACATTATTCCAACAGCCTTTCTCCATTTCTCTTCACAAATAAATTGATGG
ACGTGATTGACGTGAAATTTGCAATAGATTTCTTGGTCCTTTTTATCCAT
CCATCGTCGTAACCAGCAGCCATCTGAATTTCAAACATTATTCCAACAGC
CTTTCTCCATTTCTCTTCACAAATAAATTGATGGACGTGATTGACGTGAA
ATTTGCAATAGATTTCTTGGTCCTTTTTATCCATCCATCGTCGTAACCAG
CAGCCATCTGAATTTCAAACATGATTCCAACAGCCTTTCTCCATTTCTCT
TTGTCCGTTTTGTAAAGAAGAActcattttttgcttattttgaacgCAAT
TCACAATCACAAGTAGGAAATTTAGATATCTTTTTTAGGAATCCTAATCC
CCTGAGCCTGTAATTTTGATCTAGTTCaagcattttgaaatttcgtgGTT
GTAGGATTTTGAACCATAATCCCtaattcttttttagaaattgcCCAGCT
TTTTGGTAATCTTGGGAGCTATGGATAAcgagttttttttattgttacct
cctttttactttttataattcAAAGATTGGGATTTTTAAGGTTTCTGCAT
AGCATCTGTTTAGGGAAAAGTTTCTGGTGGTAGTTTTCCCCTTTTGGTTT
TCATTGTATTGAAAATGTGCGATGGGTGATTAGCTGATCATTTCTTATTT
GCAGCTACATCATATGGTTAAtccactttttttttctttttcggttGCTC
AGCTAGAGGTTtccttgttgttttttttggtgttCTTGAGAAGTGTCCGA
TGAATGATGTGCTGATATTTCTTCTTGGCAGTATAATTAACCTatatttt
ctgtaatttttgaGATGTATTTTTATAGCTTAGCCTAATTTTATTAATTA
TATCACGATAGGGGTTGATAAAATTGTAATACCTTACAATATcggaagtt
ttttttgaataaataagaattttaacaaatttaacAAATTATTTGTGTGA
attatatcatattttcaaatctttttataCTAATTGAGTATTTGAAAAAG
TTCTGTCATACTAAAATGGTAGGAAAGCTGCAATTTTGAGTGGTTTGCAG
GGG
Run BLAST on NCBI

transcript from alignment at scaffold_479:123592..126294+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068086 ID=TCONS_00068086|Name=TCONS_00068086|organism=Clytia hemisphaerica|type=transcript|length=2703bp|location=Sequence derived from alignment at scaffold_479:123592..126294+ (Clytia hemisphaerica)
ATTAAAGAAATTGTCACGTGATACCTTTTGTCTCGAAAAAGAATTCTTTG
TTATTCAAAATATTAACATTCTAATTATTTGTTTTGCAACACCGAGGGAA
GAGTTACTAGACGCTTTCTGCTCCAACCGATACTTGAATCCAATTTCTTT
ATGGATAAGAAATTTTCTGGAATTTATATACATTATTTTGAATACTGTCC
TGCTCCAAGTTAATGAACCGAAGTTTAAATCCAAGTTATTGgtgaatgaa
aactttttggaaTTTATTTGCCATAGATGCTTACTCCACGTTAATTAACC
GAAGTTTGAATCCAAGTTTTTGTGGATAAAACTCTTTTGGAATTTATTTA
CCAATTTAATGGATTGGGTCATGAATTATTTTGAACTTATGCATGCTGTC
CCTACAAGTTATCAATAATAGTTAATCAACCGATGTCTGAATCAAAGTTA
CGTGTGCATgaaaactttctattttttggaatttatttGCCACAATGGAA
TGGTTTATGACTTATCTTGAACTTTTGAAGGATGTCCCTAATCTATGGAT
GTATTGTTAGTTTCCTTTTCCTAAGTACGAAACAGATCTTCGTACAGCTT
TCTCCGCGTTAATTAACCGAAGTTTGAATCCAAGTTTTTGTGGATAAAAC
TCTTTTGGAATTTATTTACCAATTTAATGGATTGGGTCATGAATTATTTG
GAACTTATGTATGCTGTCCCTACAAGTTATCAATAATATAGTTAATCAAC
CGATGTCTGAATCAAAGTTACGTGTGCATgaaaactttctattttttgga
atttatttGCCACAATGAAATGGTTTATGACTTATCTTGAACTTTTGAAG
GATGTCCCTAATCTATGGATGTATTGTTAGTTTCCTTTTCCCAAGTACGA
AACAGATCTTCAATTAACACACGATATCCACCCGATTTCACAGTCGAATC
GAGTCCGAGCTCTTCGTCTGTTTTTGAAAGAAGTCTTTTCCACATCAAAG
TCATAGTATATCTCCTGATCGTCTATCCATCCATCATCATAACCAGCAGC
CATCTGAATTTCAAACATGATTCCAACAGCCTTTCTCCATTTCTCTTCAC
AAATAAATTGATGGACGTGATTGACGTGAAATTTGCAATAGATTTCTTGG
TCCTTTTTATCCATCCATCGTCGTAACCAGCAGCCATCTGAATTTCAAAC
ATTATTCCAACAGCCTTTCTCCATTTCTCTTCACAAATAAATTGATGGAC
GTGATTGACGTGAAATTTGCAATAGATTTCTTGGTCCTTTTTATCCATCC
ATCGTCGTAACCAGCAGCCATCTGAATTTCAAACATTATTCCAACAGCCT
TTCTCCATTTCTCTTCACAAATAAATTGATGGACGTGATTGACGTGAAAT
TTGCAATAGATTTCTTGGTCCTTTTTATCCATCCATCGTCGTAACCAGCA
GCCATCTGAATTTCAAACATTATTCCAACAGCCTTTCTCCATTTCTCTTC
ACAAATAAATTGATGGACGTGATTGACGTGAAATTTGCAATAGATTTCTT
GGTCCTTTTTATCCATCCATCGTCGTAACCAGCAGCCATCTGAATTTCAA
ACATTATTCCAACAGCCTTTCTCCATTTCTCTTCACAAATAAATTGATGG
ACGTGATTGACGTGAAATTTGCAATAGATTTCTTGGTCCTTTTTATCCAT
CCATCGTCGTAACCAGCAGCCATCTGAATTTCAAACATTATTCCAACAGC
CTTTCTCCATTTCTCTTCACAAATAAATTGATGGACGTGATTGACGTGAA
ATTTGCAATAGATTTCTTGGTCCTTTTTATCCATCCATCGTCGTAACCAG
CAGCCATCTGAATTTCAAACATGATTCCAACAGCCTTTCTCCATTTCTCT
TTGTCCGTTTTGTAAAGAAGAActcattttttgcttattttgaacgCAAT
TCACAATCACAAGTAGGAAATTTAGATATCTTTTTTAGGAATCCTAATCC
CCTGAGCCTGTAATTTTGATCTAGTTCaagcattttgaaatttcgtgGTT
GTAGGATTTTGAACCATAATCCCtaattcttttttagaaattgcCCAGCT
TTTTGGTAATCTTGGGAGCTATGGATAAcgagttttttttattgttacct
cctttttactttttataattcAAAGATTGGGATTTTTAAGGTTTCTGCAT
AGCATCTGTTTAGGGAAAAGTTTCTGGTGGTAGTTTTCCCCTTTTGGTTT
TCATTGTATTGAAAATGTGCGATGGGTGATTAGCTGATCATTTCTTATTT
GCAGCTACATCATATGGTTAAtccactttttttttctttttcggttGCTC
AGCTAGAGGTTtccttgttgttttttttggtgttCTTGAGAAGTGTCCGA
TGAATGATGTGCTGATATTTCTTCTTGGCAGTATAATTAACCTatatttt
ctgtaatttttgaGATGTATTTTTATAGCTTAGCCTAATTTTATTAATTA
TATCACGATAGGGGTTGATAAAATTGTAATACCTTACAATATcggaagtt
ttttttgaataaataagaattttaacaaatttaacAAATTATTTGTGTGA
attatatcatattttcaaatctttttataCTAATTGAGTATTTGAAAAAG
TTCTGTCATACTAAAATGGTAGGAAAGCTGCAATTTTGAGTGGTTTGCAG
GGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042509XLOC_042509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068086-exon-scaffold_479-1491911889:123592..126294TCONS_00068086-exon-scaffold_479-1491911889:123592..126294Clytia hemisphaericaexon
TCONS_00068086-exon-scaffold_479-1510915933:123592..126294TCONS_00068086-exon-scaffold_479-1510915933:123592..126294Clytia hemisphaericaexon
TCONS_00068086-exon-scaffold_479-1575043694:123592..126294TCONS_00068086-exon-scaffold_479-1575043694:123592..126294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_479supercontigscaffold_479:123592..126294 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0569924	0.0277883	0.09662	0	0	0.0303669	0.0366363	0.0342985	0	0	0	0.0284218	0.0947596	0.0196817	0.0485432	0.0347295	0	0.0438522	0.0302921	0.221889	0	0.0403163	0.0326732	0	4.23281	3.53589	0.0390739	0	0.0632571	0.0966734
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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