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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068081 ID=TCONS_00068081|Name=TCONS_00068081|organism=Clytia hemisphaerica|type=transcript|length=1163bp
TTCAGAATAATGATGACTGTTCgaaaacaaaaataccaaaggaaAGTACA
GACAACGCAAAAGACACAAAGATCACCATCTACATATTCTGGTCAAGATG
ACAATTTTTGTTGGCCTCCAAAAAGGATTAAAGGAAAAGTTGATCTACAG
TAACTAATTTATGTTGAATTCTTTCTTTACATTTAATATATTAGTACCAG
ATCACCCCTTTATCATTGCTATAATTTTTGTATTGCTTTAGTTTTTAATA
GGTGCCAGTGGATCCCACTGGGTTATTTTACCAATTGTTTGCAAAGATTT
TGAAGCCTGAAGACTCAACTCAAGCACTACAATCATCAATAAACGAAAAT
GTAAAAGCTTATGTGGCAGTGATTTCATCCAATACACCCGATTAGCACAA
TTTCAATGTTGCTTCAACACCATAATGTGAATCATCAGAATTAAGAATCA
AATCGACATCAACATCACAGCTGTCAAGTCATGAAGTTCACACTGGATCA
CACAGCATAACGTATTTGCAGTACACTTGTATcaagaaaacttttttgca
GTGTTCCACAATTGGAAGATTCTGATGATACAGCCATCTCATCCATATTT
TTAGCTAAGACAAACGTAATATTTGGTAAGAGATTTTTATACGTCAACCA
TTACTCATAAAATACATGTCACTGTTGAGTAGGCTTAAACATATGTCTGA
AATCATCTTAGACAAATTTGCATAGGGTGCAGTGCCTCATGCAAATCATT
ATCTGATGTAATGAAATGGTACTAAAATGTAAATGATTAATTAATCACAT
CCCCAAACCTgttcttttctttcttcataGCTTTTGATACCACGCTAAGG
TTACCACATAGGgtaattttcaattatttcatGGTTTTGTTTCAAAGTAA
ACTTCTGAAAGAGGTATGAACTAACACCTGAAAGCGCAATCATAGATCGC
GTTGGCggcgaaattttttatttttagggtCTTTTCCAAAAATTGCGTAG
GAAAGTAAAAAGATTTTATAGCATACATCTAAATAATGAAAACAACTAAT
AAGATTAAAAAATCGTCCTTGTGTTGAAAAATTATCCATacgtttaaaac
tttttttttggaatgtCAAGGTAAGCTCAAGTAATTGAGTgatttttgat
caatttttttggC Run BLAST on NCBI transcript from alignment at scaffold_479:35751..37236+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068081 ID=TCONS_00068081|Name=TCONS_00068081|organism=Clytia hemisphaerica|type=transcript|length=1486bp|location=Sequence derived from alignment at scaffold_479:35751..37236+ (Clytia hemisphaerica)
TTCAGAATAATGATGACTGTTCgaaaacaaaaataccaaaggaaAGTACA
GACAACGCAAAAGACACAAAGATCACCATCTACATATTCTGGTCAAGATG
ACAATTTTTGTTGGCCTCCAAAAAGGATTAAAGGAAAAGTTGATCTACAG
TAACTAATTTATGTTGAATTCTTTCTTTACATTTAATATATTAGTACCAG
ATCACCCCTTTATCATTGCTATAATTTTTGTATTGCTTTAGTTTTTAATA
GGTGCCAGTGGATCCCACTGGGTTATTTTACCAATTGTTTGCAAAGATTT
TGAAGCCTGAAGACTCAACTCAAGCACTACAATCATCAATAAACGAAAAT
GTAAAAGCTTATGTGGCAGTGATTTCATCCAATACACCCGATTAGCACAA
TTTCAATGTTGCTTCAACACCATAATGTGAATCATCAGAATTAAGAATCA
AATCGACATCAACATCACAGCTGTCAAGTCATGAAGTAATACATCACCTA
CTGCTTACTAATTGGTTTACTCTCATGACAATGAGATAGAGTATGTTCAT
CTGACCCACACAAGGACTTCTGTACAGAATAAATCCCTTTTTCGTACGAT
GTGAATAAAATTAGACATCCTTTTCGTCTTATCAAAATAACAGTCAAATG
AGAGACAAGTCAAGACTCTCTTGTTTTTAATAATACGAATCCTTTGTACG
TTAAAAATGAGCTTGCTAGATTCAAACCCTTTATAATAGAAATATTAGGC
TTAGTCTGGCTTAGTGATTATGTTAGATTTGTTTAAAGCAAATACTTATT
TATTTCAGGTTCACACTGGATCACACAGCATAACGTATTTGCAGTACACT
TGTATcaagaaaacttttttgcaGTGTTCCACAATTGGAAGATTCTGATG
ATACAGCCATCTCATCCATATTTTTAGCTAAGACAAACGTAATATTTGGT
AAGAGATTTTTATACGTCAACCATTACTCATAAAATACATGTCACTGTTG
AGTAGGCTTAAACATATGTCTGAAATCATCTTAGACAAATTTGCATAGGG
TGCAGTGCCTCATGCAAATCATTATCTGATGTAATGAAATGGTACTAAAA
TGTAAATGATTAATTAATCACATCCCCAAACCTgttcttttctttcttca
taGCTTTTGATACCACGCTAAGGTTACCACATAGGgtaattttcaattat
ttcatGGTTTTGTTTCAAAGTAAACTTCTGAAAGAGGTATGAACTAACAC
CTGAAAGCGCAATCATAGATCGCGTTGGCggcgaaattttttatttttag
ggtCTTTTCCAAAAATTGCGTAGGAAAGTAAAAAGATTTTATAGCATACA
TCTAAATAATGAAAACAACTAATAAGATTAAAAAATCGTCCTTGTGTTGA
AAAATTATCCATacgtttaaaactttttttttggaatgtCAAGGTAAGCT
CAAGTAATTGAGTgatttttgatcaatttttttggC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068081-exon-scaffold_479-1491911889:35751..36235 | TCONS_00068081-exon-scaffold_479-1491911889:35751..36235 | Clytia hemisphaerica | exon |
| TCONS_00068081-exon-scaffold_479-1510915933:35751..36235 | TCONS_00068081-exon-scaffold_479-1510915933:35751..36235 | Clytia hemisphaerica | exon |
| TCONS_00068081-exon-scaffold_479-1575043694:35751..36235 | TCONS_00068081-exon-scaffold_479-1575043694:35751..36235 | Clytia hemisphaerica | exon |
| TCONS_00068081-exon-scaffold_479-1491911889:36559..37236 | TCONS_00068081-exon-scaffold_479-1491911889:36559..37236 | Clytia hemisphaerica | exon |
| TCONS_00068081-exon-scaffold_479-1510915933:36559..37236 | TCONS_00068081-exon-scaffold_479-1510915933:36559..37236 | Clytia hemisphaerica | exon |
| TCONS_00068081-exon-scaffold_479-1575043694:36559..37236 | TCONS_00068081-exon-scaffold_479-1575043694:36559..37236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_479 | supercontig | scaffold_479:35751..37236 + |
Blast
The following BLAST results are available for this feature:
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