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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068078 ID=TCONS_00068078|Name=TCONS_00068078|organism=Clytia hemisphaerica|type=transcript|length=4617bp
gggaattgaatgacaaattttggttggttgattttggcttatatgcacgt
tttattttgtttcaaactttcaagttttaattaattgtcttgcgaacttg
attcaggcaaatctcatccttgttgttgcaaatataCATCCTGTaaatga
ctgatgttgttttttcttgaagctagatttcctagtgtgactaactgttt
gaGACTGAaacataccgtaagttggtctaatctcgacatccgtcttctaa
tttcgacacccttctttagagataggaataatatgaaagtcggAATTGgt
tattaaaaaaagatttttcctcccTTACCCCtaagcaaataaaataattt
tgaccttttcttaatttttcagctctagaaaaagggtgtcgaatttagag
gagggatgtcgacattagaccaagttaccgTATCAATGATTGAGAAGAGT
TAAAGTTTCGCGTCAACTCAATGGGGATGACAACTtccgaaaaaatgaag
aagttatataaaaaatatgttcCCTTAGCGTCATAAAACATCCCCAATAT
AGTCGGTCAGTAGCACattttgtcggatttttaaTATCTAATAAATCCAG
AAGATTCCTGTCGGCAAAAAACTCCAATGAAATGCGTTGACCTTAAAACT
GGATCAGATTTTCCGCCCTTGGGTCCCAGCTCTATCACGTCAGTGAATTT
CAAGTTGACAATTTCAATGAGGgtggatggaaaaaaaatcaaatgagact
caatgtgggtgaagtaaacaaaaacttgaagcAAATGATGATGTAGAAAA
GGGCTTAGCTATCAAAAAAGTTATTCCGACATTATTGTGACTGGGCCCCG
ACTCgggatttatgttttgaaggtgagtTGGTTGGGCAAGAAAATAGTTG
GATAGAATTAACAGAGGGTTGGACTAGAGgtataatcaaatcaatgaaTT
GGACCAAACGGAAAGCAACCACTGGAAAAGTTGAACCATCGAAACAAGTT
TTTGGATGAAGAACGTCTGACATatcagaaaaaatatcaacaactGTACA
CAAGAACGATATTCCTAAAAGTCTAATTGTAAATCTAAATCAAACACTGT
TATCATATGTTAGTCCAGGAAAATACACATTTGCTTTGAAAGAGTCAAAG
ACCGTTCCTGTGAAGGGTATCAATGATAAACGACAACAGAAACACAAAAA
GATGTTAGCCCAAGTATCAGTTCCCTAAGGAATTTGACGTTacattttca
gaaaatcagtGCTCAACACAGAAATCTGTcagcttttttgaaagtgttaT
TTTCCCATATTTCAAAAAAGTGCGCAGAGCAGTTGGCTAGCCAGATGAGC
AAAAGAGTCTTGTTATCATGGGCACCTTCAAGGGGCAGGATTACGATGTT
ATCGCCaaactttataaaaaaagcattgtCTGCTCGTTAAAAATATGGAG
ATTTGatgtttcacagaaaagtgctaccaaggggtattttggGTCCCATA
TCTCCCGAAGGACTTTttcgtttgccttgaaatttgacaatctTCTTAAC
CTAAGATTGAATTACCACTGATGTAAAAATGAACTTAGTatcgaaaatag
aaaaaaaaaatttgcaatcgAAAATTTAACCGCttaaaatcgcaaaattt
tcagccaaaagcattcaaatatagcgcttttgattcgctaaaacaagcaa
aagaaTTTCCGCATATTTCATTCTAAGATTGAGTTTTTTTGGCATGTATA
CggacataaaaaagtgctttaAAAATCCTTAGTAGTGActgaattttgtg
tttttttttgctttcagaATCAACAGAACAAATTAGAGGAACATGTTTGG
AACATGTTTTCACAACAGAGCCAatgacagaaaaatattttgaacttgta
ttcacaacaattcactcaacatgctccattttttataaaaagtgaaaccc
tggcattcatttgcttagaccgagcatagcagtgaatattgtgtttacat
gctttcagaatgaacagagccaatgacgggaaAATAATCTGAACTTgttt
gtattcacgacaattgactcaacatgctccattttttataaaaagtgaaa
ccctggcattcatttgcttagaccgagcatagcagtgaatattgtgttta
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNaaaaagtgaaaccctggcattcatttgcttagaccgagcat
agcagtgaatattgtgtttacatgctttcagaatgaacagagccaatgac
gggaaAATATTCTGAACTTGCTTGTATTCACGataattcactcaacatgc
tccattttttataaaaagtgaaaccctggcattcattccttagaccgagc
atagcagtgaatattgtgtttacatgctttcagaatgaacagagccaatg
acatAGAAAAGATAATTTCTAGCAAAATTTAACTTGTATGTTGTTAGAAA
TTATCTTTTCTATTTCATTCTAAGACTGACTTTTTTGGCATGTATACGAA
CATAGAAAAGTGCTTTAAAAATCCTTATAGTAGTGActgaattttgtgtt
ttttttttgctttcagaATCAACAGAACAAATTAGAAGAACATGTTTGGA
ACATGTTTTCACAACAGAGCCAatgacagaaaaatattttgaacttgtat
tcacaacaattcactcaacatgctccatTTTTTATAAAAAGTGAAACCCT
GGCATTCATTTGCTTAGAccgagcatagcagtgaatattgtgtttacatg
ctttcagaatgaacagagccaatgacgggaaaatattctgaacttgcttg
tattcacgacaattcactcaacatgctccattttttataaaaagtgaaac
cctggcattcctttgcttagaccgagcatagcagtgaatattgtgtttac
atgctttcagaatgaacagagccaatgacggggaaatattttgaacttgt
atttaCAACAAACAATCatcaataaatcaaaatgtATGAGCTTACGTGGC
AGTGATGTCATACTCCAATACACCACATTATCATAGATTTAACGTTGCTT
CAACACCAAATGTGAATCAGCAGATTAAAGACATCGGGCTGCCAAGTCAT
GACGTAATACATCACCAACAATGTGAATAAAATCAGACATCTTTTTTAAT
AAACATTCAAATGAGGGACAAAATTCCCTCGTTTTTAATAATAGAGCGTT
ACTATAAAGAGTTGACTCAATATCTTTGTAACAAAGATATTGAGTCAAGT
TTTTAATAATATGAATCTTCTTTACATCAAACTTCTTTACAAAAACACAC
AAGCAAAAGTTCAATCTCCTGATGGAGAAACAGAAGAATATTCCCCCTTG
CCTTGGAATCTTGTGGAAAAACATTAAAGAAACTCACttccaaataaaaa
ataagttagttatctcaaagaaaataatttggatTAATTTGTTTGACTCA
ATAAGTACATCTTTTTTCTAGTTATTTTTCAGAATAATGATGACTGTTCg
aaaacaaaaacaccaaaGGATAGTACAGACAACGCAAAAGACACAAAGAT
CGCTATCTACATATTCTGGTCAAGATGACAATTTTTGTTGGGCTCCAAAA
AGGATTAAAGGAAAAttTTTAATAGGTGCCAGTGGATCCCACTGGGTTAT
TTTAACCATTGTTTGCAAAGATTTTGAAGCCTGAAGACTCAACTCAAGCA
CTACAATCATCAATAAACGAAAATGTAAAAGCTTATGTGGGAGTGATGTC
ATCCAATACATCAGATTAACACAATTTCAATGTTGCTTCAACACCATAAT
GTGAATCAGCAGATTAAAGACATCAAATCGACATCAACATTGCAGCTGTC
AAGTCATGAAGTTCACACTGGACCACACAGCAGAACGTATTTGCAGTACA
CTTGTATcaagaaaacttttttgcaGAATTCCACATTTGGAAGATTCCGA
TGATACAACCATCTCATCCATACTTTTAGCTAAGACAAACGTAATATTTG
GTAAGAGGTTTTTATACGCCAACCAGTACTCGTGAAATACATGTCTGTCA
ATGTTGAGTAGGCttaaaaatatgtttgaaatcATCTTAGACAAATTTGC
ATAGGGTGCAGTGCCTCATGCGAATCAATCTGATGTAATGAAATGGTACT
AAAATGTAAGTGGTTAATTAATCACATCCCCAAACCTGTTCTTTTCTTTG
TTCATAGCTTTTGATACAACGCTAAGTTTACCACATAGGgtaattttcaa
ttatttcatggttttttgtttcaaaataaacTTCTGAAAGAGGTACGAAT
TAACACCTGAAAGTGCAATCATAGATCGCGTTGGCggcgaaattttttat
ttttatggtCTTTTCCAAAAATTGCGTAGGAAAGTAAAAAGATTTTATAG
CATACATCTAAATAATGAAAACAACtaataagatttaaaaaatcgtCCTT
GTGTTGAAAAATTATCCATacgtttaaaactttttttttggaatgtCAAG
GTAAGCTCAAGTAATTGAGTgatttttgatcaatttttttggCTTTGTCA
TGTCTTTAATATGGCCC Run BLAST on NCBI transcript from alignment at scaffold_479:22678..27722+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068078 ID=TCONS_00068078|Name=TCONS_00068078|organism=Clytia hemisphaerica|type=transcript|length=5045bp|location=Sequence derived from alignment at scaffold_479:22678..27722+ (Clytia hemisphaerica)
gggaattgaatgacaaattttggttggttgattttggcttatatgcacgt
tttattttgtttcaaactttcaagttttaattaattgtcttgcgaacttg
attcaggcaaatctcatccttgttgttgcaaatataCATCCTGTaaatga
ctgatgttgttttttcttgaagctagatttcctagtgtgactaactgttt
gaGACTGAaacataccgtaagttggtctaatctcgacatccgtcttctaa
tttcgacacccttctttagagataggaataatatgaaagtcggAATTGgt
tattaaaaaaagatttttcctcccTTACCCCtaagcaaataaaataattt
tgaccttttcttaatttttcagctctagaaaaagggtgtcgaatttagag
gagggatgtcgacattagaccaagttaccgTATCAATGATTGAGAAGAGT
TAAAGTTTCGCGTCAACTCAATGGGGATGACAACTtccgaaaaaatgaag
aagttatataaaaaatatgttcCCTTAGCGTCATAAAACATCCCCAATAT
AGTCGGTCAGTAGCACattttgtcggatttttaaTATCTAATAAATCCAG
AAGATTCCTGTCGGCAAAAAACTCCAATGAAATGCGTTGACCTTAAAACT
GGATCAGATTTTCCGCCCTTGGGTCCCAGCTCTATCACGTCAGTGAATTT
CAAGTTGACAATTTCAATGAGGgtggatggaaaaaaaatcaaatgagact
caatgtgggtgaagtaaacaaaaacttgaagcAAATGATGATGTAGAAAA
GGGCTTAGCTATCAAAAAAGTTATTCCGACATTATTGTGACTGGGCCCCG
ACTCgggatttatgttttgaaggtgagtTGGTTGGGCAAGAAAATAGTTG
GATAGAATTAACAGAGGGTTGGACTAGAGgtataatcaaatcaatgaaTT
GGACCAAACGGAAAGCAACCACTGGAAAAGTTGAACCATCGAAACAAGTT
TTTGGATGAAGAACGTCTGACATatcagaaaaaatatcaacaactGTACA
CAAGAACGATATTCCTAAAAGTCTAATTGTAAATCTAAATCAAACACTGT
TATCATATGTTAGTCCAGGAAAATACACATTTGCTTTGAAAGAGTCAAAG
ACCGTTCCTGTGAAGGGTATCAATGATAAACGACAACAGAAACACAAAAA
GATGTTAGCCCAAGTATCAGTTCCCTAAGGAATTTGACGTTacattttca
gaaaatcagtGCTCAACACAGAAATCTGTcagcttttttgaaagtgttaT
TTTCCCATATTTCAAAAAAGTGCGCAGAGCAGTTGGCTAGCCAGATGAGC
AAAAGAGTCTTGTTATCATGGGCACCTTCAAGGGGCAGGATTACGATGTT
ATCGCCaaactttataaaaaaagcattgtCTGCTCGTTAAAAATATGGAG
ATTTGatgtttcacagaaaagtgctaccaaggggtattttggGTCCCATA
TCTCCCGAAGGACTTTttcgtttgccttgaaatttgacaatctTCTTAAC
CTAAGATTGAATTACCACTGATGTAAAAATGAACTTAGTatcgaaaatag
aaaaaaaaaatttgcaatcgAAAATTTAACCGCttaaaatcgcaaaattt
tcagccaaaagcattcaaatatagcgcttttgattcgctaaaacaagcaa
aagaaTTTCCGCATATTTCATTCTAAGATTGAGTTTTTTTGGCATGTATA
CggacataaaaaagtgctttaAAAATCCTTAGTAGTGActgaattttgtg
tttttttttgctttcagaATCAACAGAACAAATTAGAGGAACATGTTTGG
AACATGTTTTCACAACAGAGCCAatgacagaaaaatattttgaacttgta
ttcacaacaattcactcaacatgctccattttttataaaaagtgaaaccc
tggcattcatttgcttagaccgagcatagcagtgaatattgtgtttacat
gctttcagaatgaacagagccaatgacgggaaAATAATCTGAACTTgttt
gtattcacgacaattgactcaacatgctccattttttataaaaagtgaaa
ccctggcattcatttgcttagaccgagcatagcagtgaatattgtgttta
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNaaaaagtgaaaccctggcattcatttgcttagaccgagcat
agcagtgaatattgtgtttacatgctttcagaatgaacagagccaatgac
gggaaAATATTCTGAACTTGCTTGTATTCACGataattcactcaacatgc
tccattttttataaaaagtgaaaccctggcattcattccttagaccgagc
atagcagtgaatattgtgtttacatgctttcagaatgaacagagccaatg
acatAGAAAAGATAATTTCTAGCAAAATTTAACTTGTATGTTGTTAGAAA
TTATCTTTTCTATTTCATTCTAAGACTGACTTTTTTGGCATGTATACGAA
CATAGAAAAGTGCTTTAAAAATCCTTATAGTAGTGActgaattttgtgtt
ttttttttgctttcagaATCAACAGAACAAATTAGAAGAACATGTTTGGA
ACATGTTTTCACAACAGAGCCAatgacagaaaaatattttgaacttgtat
tcacaacaattcactcaacatgctccatTTTTTATAAAAAGTGAAACCCT
GGCATTCATTTGCTTAGAccgagcatagcagtgaatattgtgtttacatg
ctttcagaatgaacagagccaatgacgggaaaatattctgaacttgcttg
tattcacgacaattcactcaacatgctccattttttataaaaagtgaaac
cctggcattcctttgcttagaccgagcatagcagtgaatattgtgtttac
atgctttcagaatgaacagagccaatgacggggaaatattttgaacttgt
atttaCAACAAACAATCatcaataaatcaaaatgtATGAGCTTACGTGGC
AGTGATGTCATACTCCAATACACCACATTATCATAGATTTAACGTTGCTT
CAACACCAAATGTGAATCAGCAGATTAAAGACATCGGGCTGCCAAGTCAT
GACGTAATACATCACCAACAATGTGAATAAAATCAGACATCTTTTTTAAT
AAACATTCAAATGAGGGACAAAATTCCCTCGTTTTTAATAATAGAGCGTT
ACTATAAAGAGTTGACTCAATATCTTTGTAACAAAGATATTGAGTCAAGT
TTTTAATAATATGAATCTTCTTTACATCAAACTTCTTTACAAAAACACAC
AAGCAAAAGTTCAATCTCCTGATGGAGAAACAGAAGAATATTCCCCCTTG
CCTTGGAATCTTGTGGAAAAACATTAAAGAAACTCACttccaaataaaaa
ataagttagttatctcaaagaaaataatttggatTAATTTGTTTGACTCA
ATAAGTACATCTTTTTTCTAGTTATTTTTCAGAATAATGATGACTGTTCg
aaaacaaaaacaccaaaGGATAGTACAGACAACGCAAAAGACACAAAGAT
CGCTATCTACATATTCTGGTCAAGATGACAATTTTTGTTGGGCTCCAAAA
AGGATTAAAGGAAAAGTTGATCTACAGTAACTAATTTATGTTGAATTCTT
TCTTTACATTTAATATATTAGTACCAGATTACCCCTTTGTCATTgctatg
atttattttttttgctttagttTTTAATAGGTGCCAGTGGATCCCACTGG
GTTATTTTAACCATTGTTTGCAAAGATTTTGAAGCCTGAAGACTCAACTC
AAGCACTACAATCATCAATAAACGAAAATGTAAAAGCTTATGTGGGAGTG
ATGTCATCCAATACATCAGATTAACACAATTTCAATGTTGCTTCAACACC
ATAATGTGAATCAGCAGATTAAAGACATCAAATCGACATCAACATTGCAG
CTGTCAAGTCATGAAGTAATACATCGCCTACTACTTACTAATTGGTTTAC
TCTCAAGAAATTCAGATAGAATATGTTCATCTGACCCACACAAGGACTTC
TGTACAGAATAAATCCCTTTTTCGTACGATGTGAATGAAATTAGACATCC
TTTTCATCTTATCAAAATAACAGTCAAATGAGGGACAAGTCAAGATTCCC
TCGTTTTTAATAATACAAATCCTCTGTACGTTAAAAATGAGCTTGCTAGA
TTCAAACCCGTTAGTATAGAAATATTAGGCTTAGTCTGGCTTAGTGATTA
TGTTAGATTTGTTTAAAGCAAATACTTATTTATTTCAGGTTCACACTGGA
CCACACAGCAGAACGTATTTGCAGTACACTTGTATcaagaaaactttttt
gcaGAATTCCACATTTGGAAGATTCCGATGATACAACCATCTCATCCATA
CTTTTAGCTAAGACAAACGTAATATTTGGTAAGAGGTTTTTATACGCCAA
CCAGTACTCGTGAAATACATGTCTGTCAATGTTGAGTAGGCttaaaaata
tgtttgaaatcATCTTAGACAAATTTGCATAGGGTGCAGTGCCTCATGCG
AATCAATCTGATGTAATGAAATGGTACTAAAATGTAAGTGGTTAATTAAT
CACATCCCCAAACCTGTTCTTTTCTTTGTTCATAGCTTTTGATACAACGC
TAAGTTTACCACATAGGgtaattttcaattatttcatggttttttgtttc
aaaataaacTTCTGAAAGAGGTACGAATTAACACCTGAAAGTGCAATCAT
AGATCGCGTTGGCggcgaaattttttatttttatggtCTTTTCCAAAAAT
TGCGTAGGAAAGTAAAAAGATTTTATAGCATACATCTAAATAATGAAAAC
AACtaataagatttaaaaaatcgtCCTTGTGTTGAAAAATTATCCATacg
tttaaaactttttttttggaatgtCAAGGTAAGCTCAAGTAATTGAGTga
tttttgatcaatttttttggCTTTGTCATGTCTTTAATATGGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068078-exon-scaffold_479-1491911889:22678..26342 | TCONS_00068078-exon-scaffold_479-1491911889:22678..26342 | Clytia hemisphaerica | exon |
| TCONS_00068078-exon-scaffold_479-1510915933:22678..26342 | TCONS_00068078-exon-scaffold_479-1510915933:22678..26342 | Clytia hemisphaerica | exon |
| TCONS_00068078-exon-scaffold_479-1575043694:22678..26342 | TCONS_00068078-exon-scaffold_479-1575043694:22678..26342 | Clytia hemisphaerica | exon |
| TCONS_00068078-exon-scaffold_479-1491911889:26448..26692 | TCONS_00068078-exon-scaffold_479-1491911889:26448..26692 | Clytia hemisphaerica | exon |
| TCONS_00068078-exon-scaffold_479-1510915933:26448..26692 | TCONS_00068078-exon-scaffold_479-1510915933:26448..26692 | Clytia hemisphaerica | exon |
| TCONS_00068078-exon-scaffold_479-1575043694:26448..26692 | TCONS_00068078-exon-scaffold_479-1575043694:26448..26692 | Clytia hemisphaerica | exon |
| TCONS_00068078-exon-scaffold_479-1491911889:27016..27722 | TCONS_00068078-exon-scaffold_479-1491911889:27016..27722 | Clytia hemisphaerica | exon |
| TCONS_00068078-exon-scaffold_479-1510915933:27016..27722 | TCONS_00068078-exon-scaffold_479-1510915933:27016..27722 | Clytia hemisphaerica | exon |
| TCONS_00068078-exon-scaffold_479-1575043694:27016..27722 | TCONS_00068078-exon-scaffold_479-1575043694:27016..27722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_479 | supercontig | scaffold_479:22678..27722 + |
Blast
The following BLAST results are available for this feature:
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