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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068075 ID=TCONS_00068075|Name=TCONS_00068075|organism=Clytia hemisphaerica|type=transcript|length=930bp
CGAAAAGTTATCACTTGGTGCATGGAATGTTCGAACTACCAATGACAGCA
CAGATTCAGTCCGTCCAGAACGTGCAACAGCAATCATCTCACACGAACTA
CATAATGCTCGCATTGACATATGTGCGCTCAGCGAAGTCAGACGAGAAGG
TACCGGCAATTTAATTGAAAAAGAATACTCATTCTACTGGAGTGGTGGTG
CTTCGAAAGAAGCTGGGGTTGGTTTCGCCATCTCAAACTCACTGTCCAAT
GTTCATCTTGACATCTCGAACATCTCTGATAGACTCATGACCCTCAGGAT
TCAACTGAAATCTGGAGATCATTTGAAACTTGTCAGCGTTTACGCACCGA
CAATGCAACGTTCTCAAGAAGAGAAGGAACTCTTTTACAGCCAACTGTTG
AAAGCGATAAAAAGCAACAGTGATGACCATCTCATTATCCTCGGTGACTT
TAATTCTCGTGTTGGTTCCGACTGGTTGTTATGGCCGAATGTACTTGGAA
AGCATGGTGTAGGTCGGATGAATTCCAATGGTCTAATGCTTCTAGACTTT
TGCACTGAGAATGATCTCTCTGTTATGGGGTCTATGTTTCAGATGAAGAA
CTCTCTCAAAACCACATGGAAACATCCCAGGTCAAAACACTGGCATCAAC
TTGATCATGTCCTTGCAAATCAACTTGCACGTCAATACATCGATGTAGTA
AAGGTCAACCTCTCAGCTGACTGCTTCACGGACCACAGACTGCTCACTTG
TAAATGTTCCTTTTCCCTAAAGCgcaaaaagaaaagtaaaaaaccaCCTA
CCAGACCATCTATCAAAGTTACGCGTGAAATGATTGAACAACTGCATCAA
TACTTCGACCAACACCTGACTAACCTTCCTCAAGAATGGGATGACCTCAA
GGAGTGCCTCCAAAAAGCTGCCACCTTTGC Run BLAST on NCBI protein sequence of TCONS_00068075-protein >TCONS_00068075-protein ID=TCONS_00068075-protein|Name=TCONS_00068075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
EKLSLGAWNVRTTNDSTDSVRPERATAIISHELHNARIDICALSEVRREG
TGNLIEKEYSFYWSGGASKEAGVGFAISNSLSNVHLDISNISDRLMTLRI
QLKSGDHLKLVSVYAPTMQRSQEEKELFYSQLLKAIKSNSDDHLIILGDF
NSRVGSDWLLWPNVLGKHGVGRMNSNGLMLLDFCTENDLSVMGSMFQMKN
SLKTTWKHPRSKHWHQLDHVLANQLARQYIDVVKVNLSADCFTDHRLLTC
KCSFSLKRKKKSKKPPTRPSIKVTREMIEQLHQYFDQHLTNLPQEWDDLK
ECLQKAATF Run BLAST on NCBI transcript from alignment at scaffold_478:753071..754000 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068075 ID=TCONS_00068075|Name=TCONS_00068075|organism=Clytia hemisphaerica|type=transcript|length=930bp|location=Sequence derived from alignment at scaffold_478:753071..754000 (Clytia hemisphaerica)
GCAAAGGTGGCAGCTTTTTGGAGGCACTCCTTGAGGTCATCCCATTCTTG
AGGAAGGTTAGTCAGGTGTTGGTCGAAGTATTGATGCAGTTGTTCAATCA
TTTCACGCGTAACTTTGATAGATGGTCTGGTAGGtggttttttacttttc
tttttgcGCTTTAGGGAAAAGGAACATTTACAAGTGAGCAGTCTGTGGTC
CGTGAAGCAGTCAGCTGAGAGGTTGACCTTTACTACATCGATGTATTGAC
GTGCAAGTTGATTTGCAAGGACATGATCAAGTTGATGCCAGTGTTTTGAC
CTGGGATGTTTCCATGTGGTTTTGAGAGAGTTCTTCATCTGAAACATAGA
CCCCATAACAGAGAGATCATTCTCAGTGCAAAAGTCTAGAAGCATTAGAC
CATTGGAATTCATCCGACCTACACCATGCTTTCCAAGTACATTCGGCCAT
AACAACCAGTCGGAACCAACACGAGAATTAAAGTCACCGAGGATAATGAG
ATGGTCATCACTGTTGCTTTTTATCGCTTTCAACAGTTGGCTGTAAAAGA
GTTCCTTCTCTTCTTGAGAACGTTGCATTGTCGGTGCGTAAACGCTGACA
AGTTTCAAATGATCTCCAGATTTCAGTTGAATCCTGAGGGTCATGAGTCT
ATCAGAGATGTTCGAGATGTCAAGATGAACATTGGACAGTGAGTTTGAGA
TGGCGAAACCAACCCCAGCTTCTTTCGAAGCACCACCACTCCAGTAGAAT
GAGTATTCTTTTTCAATTAAATTGCCGGTACCTTCTCGTCTGACTTCGCT
GAGCGCACATATGTCAATGCGAGCATTATGTAGTTCGTGTGAGATGATTG
CTGTTGCACGTTCTGGACGGACTGAATCTGTGCTGTCATTGGTAGTTCGA
ACATTCCATGCACCAAGTGATAACTTTTCG Coding sequence (CDS) from alignment at scaffold_478:753071..754000 >TCONS_00068075 ID=TCONS_00068075|Name=TCONS_00068075|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_478:753071..754000 (Clytia hemisphaerica)
AAAGGTGGCAGCTTTTTGGAGGCACTCCTTGAGGTCATCCCATTCTTGAG
GAAGGTTAGTCAGGTGTTGGTCGAAGTATTGATGCAGTTGTTCAATCATT
TCACGCGTAACTTTGATAGATGGTCTGGTAGGtggttttttacttttctt
tttgcGCTTTAGGGAAAAGGAACATTTACAAGTGAGCAGTCTGTGGTCCG
TGAAGCAGTCAGCTGAGAGGTTGACCTTTACTACATCGATGTATTGACGT
GCAAGTTGATTTGCAAGGACATGATCAAGTTGATGCCAGTGTTTTGACCT
GGGATGTTTCCATGTGGTTTTGAGAGAGTTCTTCATCTGAAACATAGACC
CCATAACAGAGAGATCATTCTCAGTGCAAAAGTCTAGAAGCATTAGACCA
TTGGAATTCATCCGACCTACACCATGCTTTCCAAGTACATTCGGCCATAA
CAACCAGTCGGAACCAACACGAGAATTAAAGTCACCGAGGATAATGAGAT
GGTCATCACTGTTGCTTTTTATCGCTTTCAACAGTTGGCTGTAAAAGAGT
TCCTTCTCTTCTTGAGAACGTTGCATTGTCGGTGCGTAAACGCTGACAAG
TTTCAAATGATCTCCAGATTTCAGTTGAATCCTGAGGGTCATGAGTCTAT
CAGAGATGTTCGAGATGTCAAGATGAACATTGGACAGTGAGTTTGAGATG
GCGAAACCAACCCCAGCTTCTTTCGAAGCACCACCACTCCAGTAGAATGA
GTATTCTTTTTCAATTAAATTGCCGGTACCTTCTCGTCTGACTTCGCTGA
GCGCACATATGTCAATGCGAGCATTATGTAGTTCGTGTGAGATGATTGCT
GTTGCACGTTCTGGACGGACTGAATCTGTGCTGTCATTGGTAGTTCGAAC
ATTCCATGCACCAAGTGATAACTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068075-exon-scaffold_478-1491911889:753071..754000 | TCONS_00068075-exon-scaffold_478-1491911889:753071..754000 | Clytia hemisphaerica | exon |
| TCONS_00068075-exon-scaffold_478-1510915933:753071..754000 | TCONS_00068075-exon-scaffold_478-1510915933:753071..754000 | Clytia hemisphaerica | exon |
| TCONS_00068075-exon-scaffold_478-1575043694:753071..754000 | TCONS_00068075-exon-scaffold_478-1575043694:753071..754000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:753071..754000 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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