TCONS_00068073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068073
Unique NameTCONS_00068073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068073 ID=TCONS_00068073|Name=TCONS_00068073|organism=Clytia hemisphaerica|type=transcript|length=667bp
ttttttttctggacatACTGTATTTTAGAAATTCAATTTAGTTTCTTTGT
GAAAATAAACTTAGCATTGTAACTTGCATGGAATTTATATTTTATACCCG
AGGCTTGCTATTTTATTGATATCTTTTTTCATGACCTGTTTTAAAGGTCT
TTATAATTAACGAAAAGTTAATTTTAATTTCGCTCGAGACCTTTGCCTTA
CATCGGTCTTtccataaattattttgagtgcaacgactgcctcgttttga
aaccattatcTAGGTGATTAAGTGTTCTTCTTATATTAAGTCTTCTGAGA
CTCAATTACCATGGCAATATTTTGGAAACGAGATAATCGTTGCTAATGAA
ATAATTTGTAAAAAGGTCAAATATATGCACGTATTGATAAGTCAAGAGTC
GCGTCATCAACTCGAAGCAACTTGGAATTAAATCAGTTAAGAATTTGAAG
AGACATTAACTCGGTTCAATATCGAAAAGTTTTGAAGAAATTATACTAAA
AAGGTTTTGTAACTTTTTGtggaaaaaacgaaaattttattttgtttgtt
tatgtttatgttaaGTAGTAAAATAATATGTGTTATGTGTTGTACAGGTA
TTTTAAGGaggaaaaattttatcaaatttttgaaatatctgtgtgtaaaa
aaagttctgattccaat
Run BLAST on NCBI

transcript from alignment at scaffold_478:717493..718159

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068073 ID=TCONS_00068073|Name=TCONS_00068073|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at scaffold_478:717493..718159 (Clytia hemisphaerica)
attggaatcagaactttttttacacacagatatttcaaaaatttgataaa
atttttcctCCTTAAAATACCTGTACAACACATAACACATATTATTTTAC
TACttaacataaacataaacaaacaaaataaaattttcgttttttccaCA
AAAAGTTACAAAACCTTTTTAGTATAATTTCTTCAAAACTTTTCGATATT
GAACCGAGTTAATGTCTCTTCAAATTCTTAACTGATTTAATTCCAAGTTG
CTTCGAGTTGATGACGCGACTCTTGACTTATCAATACGTGCATATATTTG
ACCTTTTTACAAATTATTTCATTAGCAACGATTATCTCGTTTCCAAAATA
TTGCCATGGTAATTGAGTCTCAGAAGACTTAATATAAGAAGAACACTTAA
TCACCTAgataatggtttcaaaacgaggcagtcgttgcactcaaaataat
ttatggaAAGACCGATGTAAGGCAAAGGTCTCGAGCGAAATTAAAATTAA
CTTTTCGTTAATTATAAAGACCTTTAAAACAGGTCATGAAAAAAGATATC
AATAAAATAGCAAGCCTCGGGTATAAAATATAAATTCCATGCAAGTTACA
ATGCTAAGTTTATTTTCACAAAGAAACTAAATTGAATTTCTAAAATACAG
Tatgtccagaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042500XLOC_042500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068073-exon-scaffold_478-1491911889:717493..718159TCONS_00068073-exon-scaffold_478-1491911889:717493..718159Clytia hemisphaericaexon
TCONS_00068073-exon-scaffold_478-1510915933:717493..718159TCONS_00068073-exon-scaffold_478-1510915933:717493..718159Clytia hemisphaericaexon
TCONS_00068073-exon-scaffold_478-1575043694:717493..718159TCONS_00068073-exon-scaffold_478-1575043694:717493..718159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:717493..718159 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.102997	0.0858074	0.419034	0.0825475	0.499912	0.381192	0.589331	0.162352	0.394125	0.259258	1.45672	1.97956	0.483842	0.473688	0.116713	0.0596026	0.177014	0.0875689	0.156926	0.112852	0	0	0.338194	0.371127	0	0	0.0859771	0.0875971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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