TCONS_00068061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068061
Unique NameTCONS_00068061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068061 ID=TCONS_00068061|Name=TCONS_00068061|organism=Clytia hemisphaerica|type=transcript|length=239bp
GTACGCAAAGCATAATAAtcgaaaatcaaatcaatcaaaatcaaaaatct
caAGTACCaatgctaaaaataaaaaattaaaaatttcttgtttcatACGA
ATAACATTATTTGtgaaaatgaagcaagtttAGCACACACACTCAGCTCT
CAATTTAACACcaggaaaattaattttgatatcCTGGAACCAGGAAGGAT
CAAAAGAAACTCCAGGATTTCTTTCCAAATGAGCAGCCA
Run BLAST on NCBI

transcript from alignment at scaffold_478:246814..247052

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068061 ID=TCONS_00068061|Name=TCONS_00068061|organism=Clytia hemisphaerica|type=transcript|length=239bp|location=Sequence derived from alignment at scaffold_478:246814..247052 (Clytia hemisphaerica)
TGGCTGCTCATTTGGAAAGAAATCCTGGAGTTTCTTTTGATCCTTCCTGG
TTCCAGgatatcaaaattaattttcctgGTGTTAAATTGAGAGCTGAGTG
TGTGTGCTaaacttgcttcattttcaCAAATAATGTTATTCGTatgaaac
aagaaatttttaattttttatttttagcattGGTACTtgagatttttgat
tttgattgatttgattttcgaTTATTATGCTTTGCGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042489XLOC_042489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068061-exon-scaffold_478-1491911889:246814..247052TCONS_00068061-exon-scaffold_478-1491911889:246814..247052Clytia hemisphaericaexon
TCONS_00068061-exon-scaffold_478-1510915933:246814..247052TCONS_00068061-exon-scaffold_478-1510915933:246814..247052Clytia hemisphaericaexon
TCONS_00068061-exon-scaffold_478-1575043694:246814..247052TCONS_00068061-exon-scaffold_478-1575043694:246814..247052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:246814..247052 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.1729	39.0365	24.5107	10.5137	3.6979	0.974042	1.17514	0	3.34305	10.1994	0	0	2.7637	0	5.65559	5.82107	0	0	10.1526	0	5.78868	0	0	15.4193	1.99465	0	15.2428	30.1259	22.9455	24.2813
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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