TCONS_00068058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068058
Unique NameTCONS_00068058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068058 ID=TCONS_00068058|Name=TCONS_00068058|organism=Clytia hemisphaerica|type=transcript|length=331bp
CAAATCATGGaccaattttgaattcaaatatattaaaaatatGAACTACT
CTTCTTGCCCTAGAGGAACAGCCGGGAAATTGATAACCTGGCGTCCGCAT
GCCCCAAGACGTTTTGGTCGCCCTTGTGTTTCTCTCAAGTCGATCATTGA
AGAGCAAACtcaagagcagccgccggcagatttttttgaaatatctgtta
tttttttccaggagagtaaattttatggataaatctaggagagactttcc
tcaaaacaccaAGATAAAATCCAGGTGTCGCCTTTAaagacatctgttct
taaaatgaaTCGGATGAATCAAGAAGGAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_478:222696..223026

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068058 ID=TCONS_00068058|Name=TCONS_00068058|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at scaffold_478:222696..223026 (Clytia hemisphaerica)
TCTTCCTTCTTGATTCATCCGAttcattttaagaacagatgtcttTAAAG
GCGACACCTGGATTTTATCTtggtgttttgaggaaagtctctcctagatt
tatccataaaatttactctcctggaaaaaaataacagatatttcaaaaaa
atctgccggcggctgctcttgaGTTTGCTCTTCAATGATCGACTTGAGAG
AAACACAAGGGCGACCAAAACGTCTTGGGGCATGCGGACGCCAGGTTATC
AATTTCCCGGCTGTTCCTCTAGGGCAAGAAGAGTAGTTCatatttttaat
atatttgaattcaaaattggtCCATGATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042486XLOC_042486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068058-exon-scaffold_478-1491911889:222696..223026TCONS_00068058-exon-scaffold_478-1491911889:222696..223026Clytia hemisphaericaexon
TCONS_00068058-exon-scaffold_478-1510915933:222696..223026TCONS_00068058-exon-scaffold_478-1510915933:222696..223026Clytia hemisphaericaexon
TCONS_00068058-exon-scaffold_478-1575043694:222696..223026TCONS_00068058-exon-scaffold_478-1575043694:222696..223026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:222696..223026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.290793	0.850708	3.29251	0.644242	1.5686	1.8593	1.69994	2.39091	3.63808	2.73176	3.53535	2.71133	3.08485	4.00081	0.234685	0.354403	1.74638	2.90872	0.30912	0.970415	0.730216	1.71989	0.499956	0	10.6152	7.22638	1.83411	1.24121	0	1.3014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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