TCONS_00068041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068041
Unique NameTCONS_00068041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068041 ID=TCONS_00068041|Name=TCONS_00068041|organism=Clytia hemisphaerica|type=transcript|length=285bp
TTTTAGTAGGGTTTATAACCCAAATGTCCCATTCCGGTTAGTACGCAACG
GTGTCAGGATTCAAAACGGATTTTCAAACAACAATATAAAACACGAAGCA
CGAACACTTTTTCAATTTCGATTCTCTCTAATCAACATCAATGTTTTAGT
AGGACTTTAGCCTCAACTTTTTCATTATAGTTTGTGCGCAACGGATTTTC
AAACAACAAAATGAAACATGAATCACGAACACtctttcaatttcgatttt
CTCTAATCAACATCAATGTTCTAGTAATAGTAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_478:427734..428649-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068041 ID=TCONS_00068041|Name=TCONS_00068041|organism=Clytia hemisphaerica|type=transcript|length=916bp|location=Sequence derived from alignment at scaffold_478:427734..428649- (Clytia hemisphaerica)
TTTTAGTAGGGTTTATAACCCAAATGTCCCATTCCGGTTAGTACGCAACG
GTGTCAGGATTCAAAACGGATTTTCAAACAACAATATAAAACACGAAGCA
CGAACACTTTTTCAATTTCGATTCTCTCTAATCAACATCAATGTTTTAGT
AGGGCCTTAGCATCAACTTTTTCATTATAGTTTGTGCGCAACTGATTTTC
AAACAACAAAATAAAACATGAAGCACGAACACTCTTTCAATTTCGATTCT
CTCTAATCAACATCAATGTTTTAGTAGGGCCTTAGCATCAACTTTTTCAT
TATAGTTTGTGCGCAACTGATTTTCAAACAACAATATAAAACACGAAGCA
CGAACACTCTTTCAATTTCGATTCTCTCTAATCAACATCAATGTTTTAGT
AGGACTTTAGCCTCAACTTTTTCATTATAGTTTGTGCGCAACGGATTTTC
AAACAACAAAATGAAACATGAATCACGAACACTCTTTCAATTTCGATTTT
CTCTAATCAACATCAATGTTCTAGTAATAGTAGAGCTTTAGCATCAACGT
TTTCATTATAGTTTGTGCGCAACTGATTTTCAAACAACAATATAAAACAC
GAAGCACGAACACTCTTTCAATTTCGATTCTCTCTAATCAACATCAATGT
TTCAGTAGGACTTTAGCCTCAACATTTTCATTATAGTTTGTGCGCAACTG
ATTTTCAAACAACAAAATAAAACACGAAGCACGAACACTCTTTCAATTTC
GATTCTCTCTAATCAACATCAATGTTTTAGTAGGACTTTAGCCTCAACTT
TTTCATTATAGTTTGTGCGCAACGGATTTTCAAACAACAAAATGAAACAT
GAATCACGAACACTCTTTCAATTTCGATTTTCTCTAATCAACATCAATGT
TCTAGTAATAGTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042476XLOC_042476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068041-exon-scaffold_478-1575043694:428514..428649TCONS_00068041-exon-scaffold_478-1575043694:428514..428649Clytia hemisphaericaexon
TCONS_00068041-exon-scaffold_478-1575043694:427734..427882TCONS_00068041-exon-scaffold_478-1575043694:427734..427882Clytia hemisphaericaexon
TCONS_00068041-exon-scaffold_478-1510915933:428514..428649TCONS_00068041-exon-scaffold_478-1510915933:428514..428649Clytia hemisphaericaexon
TCONS_00068041-exon-scaffold_478-1510915933:427734..427882TCONS_00068041-exon-scaffold_478-1510915933:427734..427882Clytia hemisphaericaexon
TCONS_00068041-exon-scaffold_478-1491911889:428514..428649TCONS_00068041-exon-scaffold_478-1491911889:428514..428649Clytia hemisphaericaexon
TCONS_00068041-exon-scaffold_478-1491911889:427734..427882TCONS_00068041-exon-scaffold_478-1491911889:427734..427882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:427734..428649 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188421	0	0	0	0.715307	0.441657	0	0	1.81245	0	2.08683	0.03178	5.95641	3.66134	3.69804	3.12883	1.61799	6.91071	25.9934	29.7157	11.0516	11.2138	3.74174	7.81874	1.50687	4.71279	3.59515	3.5602	0	0.522038
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top