TCONS_00068040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068040
Unique NameTCONS_00068040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068040 ID=TCONS_00068040|Name=TCONS_00068040|organism=Clytia hemisphaerica|type=transcript|length=1320bp
caaaaatcaaaaaaaactaatgagccaatcctgagaaaagctggtaacag
acggacggacgaacgaacgaacgaacgaacgaacggacatgggttaattt
ataggacctccaccggggcacccggaggtaggtccaaaaatgtgcAAAAT
AAAACTGTTTAAATCGATATCGATTGTTTTAGTAGGGTTTATAACCCAAA
TGTCCCATTCCGGTTAGTACGCAACGGTGTCAGGATTCAAAACGGATTTT
CAAACAACAATATAAAACACGAAGCACGAACACTTTTTCAATTTCGATTC
TCTCTAATCAACATCAATGTTTTAGTAGGGCCTTAGCATCAACTTTTTCA
TTATAGTTTGTGCGCAACTGATTttcaaacaacaaaataaaacatgaaGC
ACGAACACTCTTTCAATTTCGATTCTCTCTAATCAACATCAATGTTTTAG
TAGGGCCTTAGCATCAACTTTTTCATTATAGTTTGTGCGCAACTGATTTT
CAAACAACAATATAAAACACGAAGCACGAACACTCTTTCAATTTCGATTC
TCTCTAATCAACATCAATGTTTTAGTAGGACTTTAGCCTCAACTTTTTCA
TTATAGTTTGTGCGCAACGGATTTTCAAACAACAAAATGAAACATGAATC
ACGAACACtctttcaatttcgattttCTCTAATCAACATCAATGTTCTAG
TAATAGTAGAGCTTTAGCATCAACGTTTTCATTATAGTTTGTGCGCAACT
GATTTTCAAACAACAATATAAAACACGAAGCACGAACACTCTTTCAATTT
CGATTCTCTCTAATCAACATCAATGTTTCAGTAGGACTTTAGCCTCAACT
TTTTCATTATAGTTTGTGTGCAACGGATTTTCAAACAACAATATAAAACA
CGAAGCACGAACACTCTTTCAATTTCGATTCTCTCTAATCAACATCAATG
TTTTAGTAGGACTTTAGCCTCAACTTTTTCATTATAGTTTGTGCGCAACG
GATTTTCAAACAACAAAATGAAACATGAATCACGAACACtctttcaattt
cgattttCTCTAATCAACATCAATGTTCTAGTAATAGTAGAGCTTTTAAT
CCAACTGTCCCATTCTGGTTGGTTGTTTCTGTGATCATTATTAAAAGAGA
TTTCTGAACAGGAATTAAACCACCAACCACCTTCTTTGTATTGAGCACAT
TTTCCGCCGGAATTTAAATCGTTATCGCGATCAGGAGTCGAGAATTCCAT
ACCATCATTGTCTAACCAATCGgctaaaacaaaagaagtcaaaatacagt
tgactgtctctaattcgaac
Run BLAST on NCBI

transcript from alignment at scaffold_478:427009..428825-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068040 ID=TCONS_00068040|Name=TCONS_00068040|organism=Clytia hemisphaerica|type=transcript|length=1817bp|location=Sequence derived from alignment at scaffold_478:427009..428825- (Clytia hemisphaerica)
CAAAAATCAAAAAAAACTAATGAGCCAATCCTGAGAAAAGCTGGTAACAG
ACGGACGGACGAACGAACGAACGAACGAACGAACGGACATGGGTTAATTT
ATAGGACCTCCACCGGGGCACCCGGAGGTAGGTCCAAAAATGTGCAAAAT
AAAACTGTTTAAATCGATATCGATTGTTTTAGTAGGGTTTATAACCCAAA
TGTCCCATTCCGGTTAGTACGCAACGGTGTCAGGATTCAAAACGGATTTT
CAAACAACAATATAAAACACGAAGCACGAACACTTTTTCAATTTCGATTC
TCTCTAATCAACATCAATGTTTTAGTAGGGCCTTAGCATCAACTTTTTCA
TTATAGTTTGTGCGCAACTGATTTTCAAACAACAAAATAAAACATGAAGC
ACGAACACTCTTTCAATTTCGATTCTCTCTAATCAACATCAATGTTTTAG
TAGGGCCTTAGCATCAACTTTTTCATTATAGTTTGTGCGCAACTGATTTT
CAAACAACAATATAAAACACGAAGCACGAACACTCTTTCAATTTCGATTC
TCTCTAATCAACATCAATGTTTTAGTAGGACTTTAGCCTCAACTTTTTCA
TTATAGTTTGTGCGCAACGGATTTTCAAACAACAAAATGAAACATGAATC
ACGAACACTCTTTCAATTTCGATTTTCTCTAATCAACATCAATGTTCTAG
TAATAGTAGAGCTTTAGCATCAACGTTTTCATTATAGTTTGTGCGCAACT
GATTTTCAAACAACAATATAAAACACGAAGCACGAACACTCTTTCAATTT
CGATTCTCTCTAATCAACATCAATGTTTCAGTAGGACTTTAGCCTCAACA
TTTTCATTATAGTTTGTGCGCAACTGATTTTCAAACAACAAAATAAAACA
CGAAGCACGAACACTCTTTCAATTTCGATTCTCTCTAATCAACATCAATG
TTTTAGTAGGACTTTAGCCTCAACTTTTTCATTATAGTTTGTGCGCAACG
GATTTTCAAACAACAAAATGAAACATGAATCACGAACACTCTTTCAATTT
CGATTTTCTCTAATCAACATCAATGTTCTAGTAATAGTAGAGCTTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGAT
TTTCAAACAACAATATAAAACACGAAGCACGAACACTCTTTCAATTTCGA
TTCTCTCTAATCAACATCAATGTTTTAGTAGGACTTTAGCATCAACTTTT
TCATTATAGTTTGTGTGCAACGGATTTTCAAACAACAATATAAAACACGA
AGCACGAACACTCTTTCAATTTCGATTCTCTCTAATCAACATCAATGTTT
TAGTAGGACTTTAGCCTCAACTTTTTCATTATAGTTTGTGCGCAACGGAT
TTTCAAACAACAAAATGAAACATGAATCACGAACACTCTTTCAATTTCGA
TTTTCTCTAATCAACATCAATGTTCTAGTAATAGTAGAGCTTTTAATCCA
ACTGTCCCATTCTGGTTGGTTGTTTCTGTGATCATTATTAAAAGAGATTT
CTGAACAGGAATTAAACCACCAACCACCTTCTTTGTATTGAGCACATTTT
CCGCCGGAATTTAAATCGTTATCGCGATCAGGAGTCGAGAATTCCATACC
ATCATTGTCTAACCAATCGGCTAAAACAAAAGAAGTCAAAATACAGTTGA
CTGTCTCTAATTCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042476XLOC_042476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068040-exon-scaffold_478-1575043694:427977..428825TCONS_00068040-exon-scaffold_478-1575043694:427977..428825Clytia hemisphaericaexon
TCONS_00068040-exon-scaffold_478-1575043694:427009..427479TCONS_00068040-exon-scaffold_478-1575043694:427009..427479Clytia hemisphaericaexon
TCONS_00068040-exon-scaffold_478-1510915933:427977..428825TCONS_00068040-exon-scaffold_478-1510915933:427977..428825Clytia hemisphaericaexon
TCONS_00068040-exon-scaffold_478-1510915933:427009..427479TCONS_00068040-exon-scaffold_478-1510915933:427009..427479Clytia hemisphaericaexon
TCONS_00068040-exon-scaffold_478-1491911889:427977..428825TCONS_00068040-exon-scaffold_478-1491911889:427977..428825Clytia hemisphaericaexon
TCONS_00068040-exon-scaffold_478-1491911889:427009..427479TCONS_00068040-exon-scaffold_478-1491911889:427009..427479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:427009..428825 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.496743	0.526912	1.202	1.72732	0.656773	0.398346	0.416802	0.525889	0.432887	0.507924	0.768297	0.18569	2.91002	3.20029	1.76821	0.896796	0.363174	0.807136	5.95567	3.83006	3.7294	3.83328	1.47457	2.85355	0.588829	0.992755	3.17393	4.00311	0.318001	0.226306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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