TCONS_00068039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068039
Unique NameTCONS_00068039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1716

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068039 ID=TCONS_00068039|Name=TCONS_00068039|organism=Clytia hemisphaerica|type=transcript|length=1716bp
GGAAAACATAAAATGCTTCGAAATTATATCAAACGATGTCTTCTCATCTT
TAATATAGCTACTGTTACAATATTTgcaaagaagcttttacaatTCCAAT
CCATCCATCAAAACACTGCTATCGAGGGTCCTGAACCATGGTTCGATGGA
CAAGTAACACACAAGGATTTTTGTTTtcacaaatgtgttaaaaattACAC
TCACTGTTTTTATGTTCAATACAAAGAAATCGATGCTTCAACCTGGCTGT
GTAAACTTTTTGCACTCATAACAGATTTGTCCAATCATTTGGTGATTTCA
GAAGGGGAAATGTTGGCACGTTCATTTCATCCAAATGATTATAGTGGAAT
CGATTGTCAAACGCATCATGATTTTGGACATAAAACTTCAGGTGTATACA
ATATCACACACAACGGAAAAACAATGACCGTGTATTGTCACATGTTTCCA
GATGGAGGATGGATAGCTATTCAAAGAAGAGTAAATGTTGAGGATCTTTC
ATTTAATCAGAATTGGGAAGTTTACAAGGATGGTTTTGGAGATCCAGCAT
CAAACTATTGGATTGGTAATGATAACATTCACTACCTGACCACCGGCAGA
AACATGGATATCATGTTTATTGCAATAGCTTGGGACTGGTCAGAAATAAA
TGCTCGATATGAGGGTTTTTTCATCGAGGATGAAACCGCCAATTATAAAG
TACATTCAGGTACATATAAAGAGGGTACTTCAGTCGATTACAAAGCCGAT
TGGTTAGTCCATGATGGTATGGAATTCTCGACTCCTGATCGCGATAACGA
TTTATATTCCGGAAAATGTGCTCAATTAAAAGAAGGTGGTTGGTGGTTTA
AGAAATGTGCACAGATCTCTTTTAATAATGATCACACAGACAACAACAAA
GCGCAATGGAATAGTTGGAGTAAAAGCTCTACTATTACTAAAACATTGAT
GTTGATTAGAGaaaatcgaaattgaaagaGTGTTCGTGGTTCATGTTTTA
TATTGTTGTTTGAAAATCCGTTGCACACAAACTATAATGAAAACGTTGAT
GCTAAAGTCCTACTAAAACATTGATGTTGATTAGAGAGAATCGAAATTGA
AAGAGTGTTCGTGATTCATGTTTTATATTGTTGTTTGAAAATCCGTTGCG
CACAAACTataatgaaaatgttgatgCTAAAGTCCTACTAAAACATTGAT
GTTGACTAGAGAGAATCGAAATTGAAAGAGTGTTCGTGATTCGTGTTTCA
TTTTGTTGTTTGAAAATCCGTTGCACACAAACTataatgaaaatgttgat
gCTAAAGTCCTACTAAAACATTGATGTTGACTAGAGAGAATCGAAATTGA
AAGAGTGTTCGTGCttcatgttttattttgttgtttgaaAATCAGTTTTG
AATCCTGACACCGTTGCGTACTAACCGGAATAGGACACTTGGGTTATAAA
CCCTactaaaatattgaattttatcAGAGAGAATCGATATCGatttaaac
agttttttttctttgcactttttttatcttgactttatattttttatgta
aCATTTTACTAAAAGGATCAATATTTTGTTGATATCAATTTTCTTCACAT
AGGAATGTACAGAACACCACTCGTGGTGCTAATATTTGTAAAGATACTTG
GTTTGTTTTGGCAACATATCGTTGTAAATGTCGTAAAACAACTATAGTTT
TACATAATGTCATttg
Run BLAST on NCBI

transcript from alignment at scaffold_478:290068..296403-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068039 ID=TCONS_00068039|Name=TCONS_00068039|organism=Clytia hemisphaerica|type=transcript|length=6336bp|location=Sequence derived from alignment at scaffold_478:290068..296403- (Clytia hemisphaerica)
GGAAAACATAAAATGCTTCGAAATTATATCAAACGATGTCTTCTCATCTT
TAATATAGCTACTGTTACAATATTTGCAAAGAAGCTTTTACAATTCCAAT
CCATCCATCAAAACACTGCTATCGAGGGTCCTGAACCATGGTTCGATGGA
CAAGTAACACACAAGGATTTTTGTTTTCACAAATGTGTTAAAAATTACAC
TCACTGTTTTTATGTTCAATACAAAGAAATCGATGCTTCAACCTGGCTGT
GTAAACTTTTTGCACTCATAACAGATTTGTCCAATCATTTGGTGATTTCA
GAAGGGGAAATGTTGGCACGTTCATTTCATCCAAATGATTATAGTGGAAT
CGGTAAATAGATTTTTTTATATCTTAAATATTTTCCCTTGGGGAAGGAGG
TACCCCTAGGCAAAAATGGGTGCTGACGGTAATGGTAATTTTTTTACCTT
TCAAAGTCTTTCTATTACCGTGAAAAGCACAGGTCAAAATCATATATTGA
CGCTGTGCTGGACGAATCGAGATTCTATTCATCGCGCAATCAACGAAGAC
AAAAGTAACCATGACGACCATCCAAGATCTTGGATGAAGTTCAAAGTTGA
TATTTTTATTCCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGAT
TAGATTGACACATGCGCGATAAAATTTCTATTATTGGTCTTCAGAGGTTA
ATATATTCTTTGAAAACTTAACCTCTGATACTCAGGGTATCTTTCTATGG
GTTGCAAAAATGAGAAAGATTTTAATTAATCTCTCTAAGGGTCGGTTCTT
TCACAAACTCGAGTCAAAGAAGAATAGTGAATAAGTCAAGAAAGTAAGAA
AACTTTTCGACAGTATTGGAGAATTCTTTTGAAAATTGAAGAAATTTTTG
TGGAAATTTCTTTCTAACCCTTTCCATGCCATTTGACCAAAATGTTGGTC
ATTTTGGTGCTTCAAAAAGAAAGTAAAATGAAGCATTGAATTTTAGCTTG
AATATGGTAATAATATTTTTCAAAAGATAAAAACGAAGATTTACAACTTG
CTGATTTTTAAAACTATTGGTTTGAAGGTTATTTTGGTATAAAACCTTTT
AGAAAAACGCTTATCAAAGTTGAATGAAAGTGAAACAGCATAAATTCAAT
TTTGACACGGAAGGGCACTTTTTTAGCAATTTTGTCTCTCTAAGAATCAC
TTTTTCAGCATAAATTATTTTCTATAAGGGTCGATTTTCGGGGGACCCGT
CTACACATACCTGTTATCCGCCAACCCTATCACCCCCTTGGGATTTTTCC
AACTCAAAAAATAACAAATTACTTTTTCTTAATGCGGATAAACTTTACTT
TCTCTTTTCAGATTGTCAAACGCATCATGATTTTGGACATAAAACTTCAG
GTGTATACAATATCACACACAACGGAAAAACAATGACCGTGTATTGTCAC
ATGTTTCCAGATGGAGGATGGATAGCTATTCAAAGAAGAGTAAATGTTGA
GGATCTTTCATTTAATCAGAATTGGGAAGGTAATGTATTTTGTACAACAC
AGATATCTGTATAAAACCGAAGGACTAGATAGGTACTTTACTAAGCGCAA
AAAAGGGGATCTAGCGTTGGGGTTGGAATTAATCTTACTTTTTTTGCGTT
GGGGTTTGAAATTCTATTGATTATAAAAATGTAATAAGATAAAAAAACTT
TTTTCTGGTTTTCTCTAGTAGAGATGGGATTAATTGTATATTTCCAATTG
GAGTGAGACCTCAAAATATTTTTCCTAACAGGGGACCTTTTTTAGTAACT
ATCCATTAAGTAGCAGGTCCAAAACACTTCAAAAATTGTCTTCTCTCTTT
CTTTTTAAACGTCATTTCTCAACTACCTAATAACCCTAGATCTATACACA
TAACTGGACGGATTACCCCCCCCCCCTAATGTAGCGCCCAGTGTTAACTT
TGCTTTCCATTTCTCGGGTCACCTCTCACAGCTCTTAACCAAACTACCTT
TATCGGCAGTCGAACTAAAAACTATTTACTTGTCGTTTTTAGTTTACAAG
GATGGTTTTGGAGATCCAGCATCAAACTATTGGATTGGTAATGATAACAT
TCACTACCTGACCACCGGCAGAAACATGGATATCATGTTTATTGCAATAG
CTTGGGACTGGTCAGAAATAAATGCTCGATATGAGGGTTTTTTCATCGAG
GATGAAACCGCCAATTATAAAGTACATTCAGGTAATTTTTTGACTAACCT
TACTTATTCTGCGCCATTTTCCGTATCAATCAGCCTCTTCGATACGTCTA
TGTCCTTCCCTACTCTCAGCCGTTTAAATTGGAAGATCAAGGTCAGATCA
AGTTTTGTCGCCTTGTCGTTTGTTAGGTATCCCTGGTGGTCGTTTCCCGT
GAAATCTTGAAGATATATGTTCGCATGCTTAAATAAACAGTAGTGAAGAT
AAAAACGAAGATAAACGAGATTTATGACGAGAGTTTTTCGCGAGATGTTT
GCAATTTTACGGACTAAACCACAAGAGATTTGATTGAAAGAGTGAAATTA
GATTTACGTCATATATTTTGATTAGAATTTGACTGAATAGCGCTTCGCAA
AGCATACGTCATAATTATTACTTTTCACTTTTTTTGACATTTGTACGAGT
TGCAATCCCACAATTCAACGCGGCTCAATTAAAGATACGTGCAAGTTGTT
ATATATCTTTTGTCAATGATGTAGTTAACGTGCAAAAGAGATTAACGCAA
AGGTTGGTGGGATTGGAACTCGTACAAACACATCGAGAGTAATGATTATG
TCAAAAATAAAATCTATTTTTAGATTTAGCGCGGTGCGCTATTGACCAGG
CCGTAAATCAAAAACCACTGTTATAAATTTTATACTTGATCATGCTAGCA
TCTGTTTAGAAAACTTTATTTTTAGACTTGGGAGCTAGAGAACCGTCACA
AAAATTCTTGGTAAGACTAGTCAAGATTAAATCAGGCACAATAGCCGGAT
GCTTCTACACAGACTCATGCTTTTCATATATTTTCTCGTTTCAGGTACAT
ATAAAGAGGGTACTTCAGTCGATTACAAAGGTGAGGGAGATTTTTCTAGG
GCAAATTTCTACCGCAACAATAGCCTAAAGCTTACTTCTAGTTGAAACTT
TTTTTCTCGTATTCTTCCAGTAAAGTAGAACAAGAAGCACTTGGGAATAC
AATATTAAAAATTAGGTCGCATTAAAATTGTCGAAGTTTACTATTGTTAA
CTAATATTTGGAGGGAGTGGAAGTGCCAAAAGGAGGCCATCATAAAGACA
CTATGAAAGAACGAAGAAAAAACGAGAAACGAATAAAAACGACAAAAAAC
GACAAATTACGACAAAAAAACGAAAAAACGACAATAAAGAACGAGATATT
TTGCCATCCACAACCCCGACGGAAAGTGACTGTACCACCATTCCCCTTAG
TTCTATACGCTATTTAACCACTTACGGTTTAAAAGAACGCATGTGCAATT
TGTGGGCTCCAATTGGCTCATCCACTGTATGTTTGATCTTTTTTTAAAGT
GGAAAAACTATATCTGCTAAGTATCAGTAGAGATCCGGGGGTAGGCATAC
TAGTATAGCTTGTTGTGTGAAAAATTTGCTTTGACCACCCCTGATGTTAT
ACACGTTTTTTTTATTAGAGCACCTTAGTTTTGGCTGAGCCTGAATGTGC
TTATTTTCTCATCGAATTTCAGCCTCAGATGTTCTTATTGACGCTTTTAA
TTCGAAAACAAATTAACTTAAGAAAAAAATTAAATCTATAGCACTATTTA
TCTCTGCAGGTCAAAAGAAAAAGAAATTCCACCAATTATTTAATTATTCA
AAATTCGAAACATTGCAATAACTGCAACTTCTTTTCTTTGACTTTTAAAG
AAACTTTTCTCTCTTTTCCAAGGCTGGGCATGCTCTTAAGATGTTTTCAG
CCTAAATCTTCTTATAAACTGGGTTCTTATAAAAACGTGTACCATATTCG
TACTTATTAGGTCAAAGGCCATCGTTTGTCATGGTTAGATTATCTCAAAA
GCTTTTACACTTAGCTTTTAGGTAAAAAAAATAGACTCGTTTGAGGGTTC
GAGCCTTAGCAACCTTGTTGTTGACAAAAACAATTTGTTCTCCAAAATAT
ATGTTGTATCTACAAGAAAAAAAGCTTCTGATGCCAATCCCAGTTGGCAC
ACAACGTTGCTTCAACGTTTATATAATCTTCTCAACGTCCATATAACGTT
AGATAAACGTTATGGTGCTAGCTGGGATACTTCATGGTAAGCTCTAACCT
AGTATCAAGAGGTACAGAGAATTCTCGCTTATTTGAACTTTTATCATTCG
AATCACTCTATAATTCGAACTTATTCCCTATCCCCGTCAAAGAAAAATCT
ACTTAAAATCTACTTTCTACAATTCGTATCTCTCTTTAATTTGAATAAAA
TAAATTTCCCCGTTTCAGTTCGAATTAGAGACAGTCAACTGTATTTTGAC
TTCTTTTTGTTTTAGCCGATTGGTTAGTCCATGATGGTATGGAATTCTCG
ACTCCTGATCGCGATAACGATTTATATTCCGGAAAATGTGCTCAATTAAA
AGAAGGTGGTTGGTGGTTTAAGAAATGTGCACAGATCTCTTTTAATAATG
ATCACACAGACAACAACAAAGCGCAATGGAATAGTTGGAGTAAAAGCTCT
ACTATTACTAAAACATTGATGTTGATTAGAGAAAATCGAAATTGAAAGAG
TGTTCGTGGTTCATGTTTTATATTGTTGTTTGAAAATCCGTTGCACACAA
ACTATAATGAAAACGTTGATGCTAAAGTCCTACTAAAACATTGATGTTGA
TTAGAGAGAATCGAAATTGAAAGAGTGTTCGTGATTCATGTTTTATATTG
TTGTTTGAAAATCCGTTGCGCACAAACTATAATGAAAATGTTGATGCTAA
AGTCCTACTAAAACATTGATGTTGACTAGAGAGAATCGAAATTGAAAGAG
TGTTCGTGATTCGTGTTTCATTTTGTTGTTTGAAAATCCGTTGCACACAA
ACTATAATGAAAATGTTGATGCTAAAGTCCTACTAAAACATTGATGTTGA
CTAGAGAGAATCGAAATTGAAAGAGTGTTCGTGCTTCATGTTTTATTTTG
TTGTTTGAAAATCAGTTTTGAATCCTGACACCGTTGCGTACTAACCGGAA
TAGGACACTTGGGTTATAAACCCTACTAAAATATTGAATTTTATCAGAGA
GAATCGATATCGATTTAAACAGTTTTTTTTCTTTGCACTTTTTTTATCTT
GACTTTATATTTTTTATGTAACATTTTACTAAAAGGATCAATATTTTGTT
GATATCAATTTTCTTCACATAGGAATGTACAGAACACCACTCGTGGTGCT
AATATTTGTAAAGATACTTGGTTTGTTTTGGCAACATATCGTTGTAAATG
TCGTAAAACAACTATAGTTTTACATAATGTCATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042475XLOC_042475Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068039-exon-scaffold_478-1575043694:296052..296403TCONS_00068039-exon-scaffold_478-1575043694:296052..296403Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1575043694:294025..294192TCONS_00068039-exon-scaffold_478-1575043694:294025..294192Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1575043694:293323..293511TCONS_00068039-exon-scaffold_478-1575043694:293323..293511Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1575043694:292474..292509TCONS_00068039-exon-scaffold_478-1575043694:292474..292509Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1575043694:290068..291038TCONS_00068039-exon-scaffold_478-1575043694:290068..291038Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1510915933:296052..296403TCONS_00068039-exon-scaffold_478-1510915933:296052..296403Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1510915933:294025..294192TCONS_00068039-exon-scaffold_478-1510915933:294025..294192Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1510915933:293323..293511TCONS_00068039-exon-scaffold_478-1510915933:293323..293511Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1510915933:292474..292509TCONS_00068039-exon-scaffold_478-1510915933:292474..292509Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1510915933:290068..291038TCONS_00068039-exon-scaffold_478-1510915933:290068..291038Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1491911889:296052..296403TCONS_00068039-exon-scaffold_478-1491911889:296052..296403Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1491911889:294025..294192TCONS_00068039-exon-scaffold_478-1491911889:294025..294192Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1491911889:293323..293511TCONS_00068039-exon-scaffold_478-1491911889:293323..293511Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1491911889:292474..292509TCONS_00068039-exon-scaffold_478-1491911889:292474..292509Clytia hemisphaericaexon
TCONS_00068039-exon-scaffold_478-1491911889:290068..291038TCONS_00068039-exon-scaffold_478-1491911889:290068..291038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:290068..296403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278191	0.171694	0.191183	0.0975181	0	0	0.220392	0	0.593477	0.194115	0.267571	0.124032	5.5342	3.83275	1.90344	1.59972	0.835326	1.66874	9.36609	6.44422	2.21237	1.67079	1.47387	0.941567	1.06371	3.39879	9.84205	10.1865	0.097711	0.175995
Blast
[Close]
BLAST of TCONS_00068039 vs. Swiss-Prot (Human)
Match: ANGL2 (Angiopoietin-related protein 2 OS=Homo sapiens GN=ANGPTL2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.265e-30
Identity = 75/219 (34.25%), Postives = 117/219 (53.42%), Query Frame = 1 
Query:  352 DCQTHHDFGHKTSGVYNIT--HNGKTMTVYCHMFPD-GGWIAIQRRVNVEDLSFNQNWEVYKDGFGDPASNYWIGNDNIHYLTTGRNMDIMFIAIAWDWSEINARYEGFFIEDETANYKVHSGTYKEGTSVDYKADWLVHDGMEFSTPDRDNDLYSGKCAQLKEGGWWFKKCAQISFN-----NDHTDNNKAQWNSWSK----SSTITKTLMLIRENRN 972
            DC    + GH TS +Y +   +  + M V+C    D GGW  IQRR++   ++F +NWE YK GFG+    YW+G +NI++LT   N  ++     W   ++ A Y  F +E E+  YK+  G Y  G + D    +  H+G +F+T DRD+D+Y+G CA  ++GGWW+  CA  + N       H  +       W++    S ++ K +M+IR N N
Sbjct:  277 DCLQALEDGHDTSSIYLVKPENTNRLMQVWCDQRHDPGGWTVIQRRLD-GSVNFFRNWETYKQGFGNIDGEYWLGLENIYWLTNQGNYKLLVTMEDWSGRKVFAEYASFRLEPESEYYKLRLGRY-HGNAGD---SFTWHNGKQFTTLDRDHDVYTGNCAHYQKGGWWYNACAHSNLNGVWYRGGHYRSRYQDGVYWAEFRGGSYSLKKVVMMIRPNPN 490
The following BLAST results are available for this feature:
BLAST of TCONS_00068039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL22.265e-3034.25Angiopoietin-related protein 2 OS=Homo sapiens GN=... [more]
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