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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068036 ID=TCONS_00068036|Name=TCONS_00068036|organism=Clytia hemisphaerica|type=transcript|length=610bp
AAAGAACACTTTAAAACTGATTGAACTTCCAGCGTAAAGGGTGAAAAATG
AAGCTTGATGAAACTTcttgttttattgttttgcaTGGTGGTTGTTGTTC
ACTTCGATTGTGTTGAATCATGCAACACGCAATTGGTGACGGAAGGGCTA
TCTGCCGATGATGAAGCTTTGGCCGGCCGCGAGATTTTTGACATAACGCA
ATGCAAATTGGTAAACGAATTAGGTTATCCGGTTAAAAGTGCGAATTTCG
GGGTATGTGGTACGAATTCTGATTGTCTTACATCACAAGGTAGCAACAAC
GATATCCCATGTTATAATTACTGTATATTCACGCTTGCTTCATGCTATGG
AATATGTGAACAAGTAGATGAATGCTCCGGATCACAAGCAGGACCATACA
AATGCGTGTGTTACAAAGCGGACGAAAGCAATAGATCATCAACACAACCA
CCAAGTGGTAAATGAgaacaaaaaatacatttaatttATATCATCGTAAA
TATCTTAAACCCTTACTATGATTTAGTTATATAACTTAGCGGTAAATCAA
CCAGTGAAATCAATCTGAAGCtaaaaacatttcatccaaccagcttttat
ttttttgcaa Run BLAST on NCBI protein sequence of TCONS_00068036-protein >TCONS_00068036-protein ID=TCONS_00068036-protein|Name=TCONS_00068036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MKLLVLLFCMVVVVHFDCVESCNTQLVTEGLSADDEALAGREIFDITQCK
LVNELGYPVKSANFGVCGTNSDCLTSQGSNNDIPCYNYCIFTLASCYGIC
EQVDECSGSQAGPYKCVCYKADESNRSSTQPPSGK Run BLAST on NCBI transcript from alignment at scaffold_478:220170..222259- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068036 ID=TCONS_00068036|Name=TCONS_00068036|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at scaffold_478:220170..222259- (Clytia hemisphaerica)
AAAGAACACTTTAAAACTGATTGAACTTCCAGCGTAAAGGTGAGCTCTTT
GGTTTATTTTCTTACATTCTTCAATATATGGCAGAATTGTTTTCTAAATA
TTTGCCGTACGATAGCTAAACTTTCCCATTGCCACTTTACAACGGGAACA
GGCAAACACTCTAGGTGGGTACAAAAGTAGTTTAAAACTTTTAAGCGGTC
AGATTAAAGGCCTCTGTGCTTTTTGTCGGTATGATTTGAAACGGTGGAAA
GATGCTGAAAGTACGTCAGAGATGTTTGCCTTGAGAATGAGAGAGTTTAG
CTATCCAAGGGTATAATTTGGGCAATAGCTTCGAGTATTAACCTCTGTCA
AAAGGAAAGGACCGATATTTTTTATTTGTTTCATATAATATCTTAAGGTA
AGACTCGACTTTAATTGAAAAGAATGATTGGAAAACATATTGGTTAGTTA
TCCTTTGCAAGATATGAAGAAAGTACTTTAGGCGTACAAACTTTCGCAAG
CAGAAACTTTTTCGATTTTCGCGAATATTTGCCCTTTTTGCGAAAGTAAA
TGTCTTTAAAAATTCTAGGAAGGGCCATTCGCAAAAGTTTATGCTCTCGA
AAAATTCTTGACAAAATAGAAAATCTGTAAAACTTTATTAGAAAAAATTT
TGCTCACCATTTTGAATGAGTTTTGCCTTTTTGGGTAGGTCATCATAATT
TCGATTTTACAGTTTTATATAAAACTAAAATTCAAGTCAAGCCTTATCCT
CTATAAAAGAAAAAAAGAATCAACTATAAACCTTTGACCGTAAGCTTACA
ACTTTGACTTTTTTTGGACTTTTTTTTGGGGTATACTTTAAAAGAATATT
TATATGATAAAATTGGCCAAAAAATTAAGAATATGCTAAGGATATCAACA
TCATGGAATTTGGCAACAAAACCTGAGAATTCCATTTATAGAATATTTTT
AACTTTAAATTACCTATTATCCCCCGGTTCACTGTTAAATGTTAAATCTA
GCTTGAAAACTTTAGAATATAACTGTAAGAATATATTTCAATATTTTAGG
AATATGAGAAAAAAAATCTTATAAAATACACGTTTTTTTAATAGAAGAAC
ATACAAATTTTTTGAAGCTATTTTATGTTCTTAAGTTTTTAAGTTTTAAG
CCTCAGAATGTTCTTAACATGTTCTTACTTTCACCATTTAGTCAGTATTT
TTTCCATTTTTCGAAGAAAATAAGTGTTTTATGGTCCACAATGCCTTCTC
AAATGTTTTTAACTTGTTCTTAATATTTCTGCCACGGAAGAGTTATGTTC
TTATATAGTTTGTTCTTATTATACAAAAGCGTGTGGCCACTGATACGCAG
AATTCTATAGATGTGCTTCTTAAAGGAAACTTATCCATTAAAGGATTAGC
AGAAACATTCATGTTTTACTGAGCACAAGTCGAAATGACTTCTCTATTCA
TCCCTTTTTCTAATTGAAAGGAACATCCAACCCTTAAGCTATCAATCATC
TTTATGTTCATGTTTTTAGGGTGAAAAATGAAGCTTGATGAAACTTCTTG
TTTTATTGTTTTGCATGGTGGTTGTTGTTCACTTCGATTGTGTTGAATCA
TGCAACACGCAATTGGTGACGGAAGGGCTATCTGCCGATGATGAAGCTTT
GGCCGGCCGCGAGATTTTTGACATAACGCAATGCAAATTGGTAAACGAAT
TAGGTTATCCGGTTAAAAGTGCGAATTTCGGGGTATGTGGTACGAATTCT
GATTGTCTTACATCACAAGGTAGCAACAACGATATCCCATGTTATAATTA
CTGTATATTCACGCTTGCTTCATGCTATGGAATATGTGAACAAGTAGATG
AATGCTCCGGATCACAAGCAGGACCATACAAATGCGTGTGTTACAAAGCG
GACGAAAGCAATAGATCATCAACACAACCACCAAGTGGTAAATGAGAACA
AAAAATACATTTAATTTATATCATCGTAAATATCTTAAACCCTTACTATG
ATTTAGTTATATAACTTAGCGGTAAATCAACCAGTGAAATCAATCTGAAG
CTAAAAACATTTCATCCAACCAGCTTTTATTTTTTTGCAA Coding sequence (CDS) from alignment at scaffold_478:220170..222259- >TCONS_00068036 ID=TCONS_00068036|Name=TCONS_00068036|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_478:220170..222259- (Clytia hemisphaerica)
ATGAAACTTCTTGTTTTATTGTTTTGCATGGTGGTTGTTGTTCACTTCGA
TTGTGTTGAATCATGCAACACGCAATTGGTGACGGAAGGGCTATCTGCCG
ATGATGAAGCTTTGGCCGGCCGCGAGATTTTTGACATAACGCAATGCAAA
TTGGTAAACGAATTAGGTTATCCGGTTAAAAGTGCGAATTTCGGGGTATG
TGGTACGAATTCTGATTGTCTTACATCACAAGGTAGCAACAACGATATCC
CATGTTATAATTACTGTATATTCACGCTTGCTTCATGCTATGGAATATGT
GAACAAGTAGATGAATGCTCCGGATCACAAGCAGGACCATACAAATGCGT
GTGTTACAAAGCGGACGAAAGCAATAGATCATCAACACAACCACCAAGTG
GTAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068036-exon-scaffold_478-1575043694:222221..222259 | TCONS_00068036-exon-scaffold_478-1575043694:222221..222259 | Clytia hemisphaerica | exon |
| TCONS_00068036-exon-scaffold_478-1575043694:220170..220740 | TCONS_00068036-exon-scaffold_478-1575043694:220170..220740 | Clytia hemisphaerica | exon |
| TCONS_00068036-exon-scaffold_478-1510915933:222221..222259 | TCONS_00068036-exon-scaffold_478-1510915933:222221..222259 | Clytia hemisphaerica | exon |
| TCONS_00068036-exon-scaffold_478-1510915933:220170..220740 | TCONS_00068036-exon-scaffold_478-1510915933:220170..220740 | Clytia hemisphaerica | exon |
| TCONS_00068036-exon-scaffold_478-1491911889:222221..222259 | TCONS_00068036-exon-scaffold_478-1491911889:222221..222259 | Clytia hemisphaerica | exon |
| TCONS_00068036-exon-scaffold_478-1491911889:220170..220740 | TCONS_00068036-exon-scaffold_478-1491911889:220170..220740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:220170..222259 - |
Blast
The following BLAST results are available for this feature:
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