TCONS_00068022 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068022
Unique Name	TCONS_00068022
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1683

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_478:557556..559238+

transcript sequence

>TCONS_00068022 ID=TCONS_00068022|Name=TCONS_00068022|organism=Clytia hemisphaerica|type=transcript|length=1683bp
AATTGGTGACTTCAAGATTCTTAGCACCAAGATATTGAAATTCATAATAT
TGAACTTTTAAAGACTTTTACATTTGGAGAATCTGATGAATGACAATTGG
TGACTTCAAGATTCTTAGCACCAAGATATTGAAATTCATAATATTGAACT
TTTAAAGACTTTTACATTTGGAGAACCTGATGAATGAGAATTGGTGACTT
CAAGGTTCTTAGCACCAAGATATTGAAATTTATAATATTTAACTTTTAAA
GACTTTTACATTTGGAGAATCTGATGAATGACAATTGGTGACTTCAAGAT
TCTTAGCACCAAGATATTGAAATTCATAATATTGAACTTTTAAAGACTTT
TACATTTGGAGAAACTGATGAATGACAATTGGTGACTTCAAGATTCTTAG
CACCAAGATATCGAAATTCATAATATTGAACTTTTAAAGACTTTTACATT
TGGAGAACCTGATGAATGACAATTGGTGACTTCAAGATTCTTAGCACCAA
GATATCGAAATTCATAATATTGAACTTTTAAAGACTTTTACATTTGGAGA
ACCTGATGAATGACAATTGGTGACTTCAAGGTTCTTAGCACCAAGATATT
GAAATTCATAATATTGaacttttaaagaattttacattTTGAGAAACTGA
CGAATGACAATTGGTGACTTCAAGATTCTTAGCACCAAGATATCGAAATT
CATAATATTGAACTTTTAAAGACTTTTACATTTGGAGAACCTGATGAATG
ACAATTGGTGACTTCAAGATTCTTAGCACCAAGATATCGAAATTCATAAT
ATTGAACTTTTAAAGACTTTTACATTTGGAGAACCTGATGAATGACAATT
GGTGACTTCAAGATTCTTAGCACCAAGATATTGAAATTCATAATATTAAA
CTTTTAAAGACTTTTACATTTGGAGAACCTGATAAATGGCAATTGGTGAC
TTAAAGACTCTTAGCACCAAGAAATTGGAATTCATAATATTGAACTTTTA
AAGACTTGGAGGACCTGATATATGACAATTGGTGACTTCAAGATTCTTGG
CACCAAGATATTGAAATTTATAACATTGAACTTTTAAAGACTTTTACATC
AGGAGAAACTGATGAATGACAATTGGTGACTTCAAGACTCTTAGCACCAA
GATATCGAAATTCATAATATGGAACTTTTAAAGACTTGGAGGACTTGATA
TACGACAATTGGTGACTTCAAGATTCTTAGCACTAAGATATTGAAATTTG
TAACATTGAactttcaaagatttttatATTTGGAGAATGTTATAAATGGA
AAATGGCGACTTCAAACTTCAAGATACTTGGcaccaaaaatttttattat
cacGGAATCTAAGCACCAAAACCTTCTTTAACACAATTGAAAAGCTTTCC
TATGAAAGTTATTATCATTTGAATtaacatttcaaaattcattaatCACT
ATGTAGATGTGAATACAGGGTAGATTTCTACGTTTACTATCTATTTAACG
GACGGTATCAAGAAGAACCTCTACGTGATATGAATTGAGACGATTCCAAA
TGGATTGTATTATTTATAATTTGACCCATATTGAGTATTTCTACCCTTAA
GTCGGGAATAGGGAGTTTATGTATCTGTGCTTTTACAGCGATggagacgg
ttagcttctgatttgtctttatctggcacccga

Run BLAST on NCBI

transcript from alignment at scaffold_478:557556..559238+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068022 ID=TCONS_00068022|Name=TCONS_00068022|organism=Clytia hemisphaerica|type=transcript|length=1683bp|location=Sequence derived from alignment at scaffold_478:557556..559238+ (Clytia hemisphaerica)
AATTGGTGACTTCAAGATTCTTAGCACCAAGATATTGAAATTCATAATAT
TGAACTTTTAAAGACTTTTACATTTGGAGAATCTGATGAATGACAATTGG
TGACTTCAAGATTCTTAGCACCAAGATATTGAAATTCATAATATTGAACT
TTTAAAGACTTTTACATTTGGAGAACCTGATGAATGAGAATTGGTGACTT
CAAGGTTCTTAGCACCAAGATATTGAAATTTATAATATTTAACTTTTAAA
GACTTTTACATTTGGAGAATCTGATGAATGACAATTGGTGACTTCAAGAT
TCTTAGCACCAAGATATTGAAATTCATAATATTGAACTTTTAAAGACTTT
TACATTTGGAGAAACTGATGAATGACAATTGGTGACTTCAAGATTCTTAG
CACCAAGATATCGAAATTCATAATATTGAACTTTTAAAGACTTTTACATT
TGGAGAACCTGATGAATGACAATTGGTGACTTCAAGATTCTTAGCACCAA
GATATCGAAATTCATAATATTGAACTTTTAAAGACTTTTACATTTGGAGA
ACCTGATGAATGACAATTGGTGACTTCAAGGTTCTTAGCACCAAGATATT
GAAATTCATAATATTGaacttttaaagaattttacattTTGAGAAACTGA
CGAATGACAATTGGTGACTTCAAGATTCTTAGCACCAAGATATCGAAATT
CATAATATTGAACTTTTAAAGACTTTTACATTTGGAGAACCTGATGAATG
ACAATTGGTGACTTCAAGATTCTTAGCACCAAGATATCGAAATTCATAAT
ATTGAACTTTTAAAGACTTTTACATTTGGAGAACCTGATGAATGACAATT
GGTGACTTCAAGATTCTTAGCACCAAGATATTGAAATTCATAATATTAAA
CTTTTAAAGACTTTTACATTTGGAGAACCTGATAAATGGCAATTGGTGAC
TTAAAGACTCTTAGCACCAAGAAATTGGAATTCATAATATTGAACTTTTA
AAGACTTGGAGGACCTGATATATGACAATTGGTGACTTCAAGATTCTTGG
CACCAAGATATTGAAATTTATAACATTGAACTTTTAAAGACTTTTACATC
AGGAGAAACTGATGAATGACAATTGGTGACTTCAAGACTCTTAGCACCAA
GATATCGAAATTCATAATATGGAACTTTTAAAGACTTGGAGGACTTGATA
TACGACAATTGGTGACTTCAAGATTCTTAGCACTAAGATATTGAAATTTG
TAACATTGAactttcaaagatttttatATTTGGAGAATGTTATAAATGGA
AAATGGCGACTTCAAACTTCAAGATACTTGGcaccaaaaatttttattat
cacGGAATCTAAGCACCAAAACCTTCTTTAACACAATTGAAAAGCTTTCC
TATGAAAGTTATTATCATTTGAATtaacatttcaaaattcattaatCACT
ATGTAGATGTGAATACAGGGTAGATTTCTACGTTTACTATCTATTTAACG
GACGGTATCAAGAAGAACCTCTACGTGATATGAATTGAGACGATTCCAAA
TGGATTGTATTATTTATAATTTGACCCATATTGAGTATTTCTACCCTTAA
GTCGGGAATAGGGAGTTTATGTATCTGTGCTTTTACAGCGATggagacgg
ttagcttctgatttgtctttatctggcacccga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042468	XLOC_042468	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00068022-exon-scaffold_478-1491911889:557556..559238	TCONS_00068022-exon-scaffold_478-1491911889:557556..559238	Clytia hemisphaerica	exon
TCONS_00068022-exon-scaffold_478-1510915933:557556..559238	TCONS_00068022-exon-scaffold_478-1510915933:557556..559238	Clytia hemisphaerica	exon
TCONS_00068022-exon-scaffold_478-1575043694:557556..559238	TCONS_00068022-exon-scaffold_478-1575043694:557556..559238	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_478	supercontig	scaffold_478:557556..559238 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0469422	0	0	0	0	0.0309445	0.0289699	0	0	0	0	0	0	0	0	0	0	0	0	0.0698139	0.0340528	0.573072	0.355555	0.568521	2.05263	0.0330034	0.0373314	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00068022 vs. Swiss-Prot (Human)

BLAST of TCONS_00068022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00068022 (transcript) - C. hemisphaerica