TCONS_00068016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068016
Unique NameTCONS_00068016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068016 ID=TCONS_00068016|Name=TCONS_00068016|organism=Clytia hemisphaerica|type=transcript|length=2965bp
atATCAATAAGTCAGCACCAGATGAACTGTTTACGACGGAATACAATTTC
TTGGCAGCAACGGTGGTATCGGCAACGCAGAAAATGGATGTGGCAAACCA
GCCGTGCAATAAATCAAAGAATCGTTACGACACCGTCAAACCTTTTGATA
ATAATCGAGTCAAATTGACAAAACTAATAAATACAGAGggtTCTGACTAT
ATCAATGCATCTTATATCGATACATATACAAAGAAGAAATCTTTCATCTC
AACACAAGCACCACTCGTGGGAACTGTGTCCGATTTCTGGCGAATGATAT
ACGAAAATGAATCTTGGGTCATTGTAATGCTCGGCCAGGAAATCGAGAAG
GGACAGCTAAAAGCGGATCGTTTTTGGCCAGAAGAAGGTTACGTAATGGC
TTTGGGACATCTTTCGGTCAAATATGTTTCATTTCAAAAAGACGGTTTGA
AGGATGTTGTGATACGACAAGtggaaattcaaaataataagactGACGAA
AAGAAGTTGGTACAACTGTACCAATACTTGACATGGCCAAGCCATGAACA
CATTTCATCGGAAAGTATTCATTCATTGGTCCAGCTTGTCCACCAATCAC
AAATGTGGAaagagaaattgaaagccaaaacaatcacaatcgTCTCAAGT
TCTGGTATAGGAAGACCAGGAGTATTCATCGCATTGAGGTATCTTCAAGA
AGAAAGTGAAATTGAAGGTCATGTCAACATCTTTCAAGCAGTACAAAAAT
TGAGACAGCAACGTAGTGCTCTCATTCAAACAAGGgagCAATACATTCTG
ATATACACTTCAGCAATGGAGATTACCAAACATGTTCGACGAAAATCGAT
TGTTACCGAATCGTTAGCAAACGGAGTCGATGTATCGACAATCGGATTAA
ATATCGTTCCACACTGTATAAGTGAAAGTGATTTTATTTATGAACGTTTA
AACTCGGTTTCGAGGACTAGTGAATTCTAATCGACCGTATGGTGATGCAT
TCTAATATTCATTTAGTAgcgttagatggacgttatttggacgttatatT
GAATGTACAGTACAGTAAAACCTcgtttattcgaacttctactattcgaa
tctttctataattcgaacttgtttccagtccccGTCATGGGGAAACCcgc
ttaaaatactttctaatTCGAATCCCTCTGTAATTTGAACAAATAACATT
CCCCGTTCGGGTTCGTATTAACGAGAGGCAATTGTAGTTGTAATGAAAGG
TTAAATAGCCGTTACGTTATTTCGAAAATTACAGGACGTATACGAAAGCT
TGAATTTAGACAAGAATTGTCCTGTACTTTCATAAGCTGATGTATATACA
TAATGGGTTCGTGCTGTGAGTATATTTTCAGACATAAAAATGTCTATTTT
ACCTCTGGAGCGAGAATAGAATGCCGCTTTTTGAAAacaactaccttatc
ggccctttttacgccagccCTAATTTAATGCcagccccttttacgccggc
ccttattacggcaagagcctaaaaataacgccaataagggccggcgtaaa
aagggccgataaggtattttctGATGGAAATTCTTTTCCGGGAAATCTGC
ATTAGtagaaaagtcttttttttaaatacccgTTCTATTTGCTCTACTAC
ACTAGCTTCGCATGCATTTTAGAGGCACGGAGCTTGTGAGAAAATTGACT
AGTAGGGGCTGGACCAAACTTTGACGACTTTTTGACATGATTTGATATAT
GCAAAAACCCAGCATATTCATATATTGTAAATTGAGATCCTATATTCCAT
ATAAATTGAAAGATGATTTCACTAAATTTTCTTGTCTCCACCACCCAAAA
CCTTGATTTTTCTCAAGGATCTTGAAAATACATCAAGCTTTTTTGCTATT
CTTTGACGTAATTAATTAATCATATTAAAGTTACAGCTTAATAGATGTAT
TTCAAAATGATACAAGTTACTCGAAGCTGCATTTTTTTCATCCACAGTAT
ACTTTTGATGATATTagtttacaaagattttctgGCATTGTGGTAGACCT
GATGATCTAGGAAGTCACTTTCATGTTTAGTTTtagccactgacctttat
ataccatggaccaagtttctcaatcccggccaagcaatatctttgatcgg
agttttttgaaaaatagcggtgtaaatgcatcgagagcgctaaaTCTACG
ttccctcgaaaacttttgatgatgtagcgctgtTAGACGAAGATGCAGAT
ATAGCTTGGTCAAggaatatataaaggtcagtggttttaGTTCATTTGGT
ATCATGGATTTTACTATAACATAGATCAGAAAATCATAGAAAACAGCCCA
GCTGACTTTTGTGGGCGATGATAGAACGCAATCCTTaatataggccattt
cacaatCGCAAAGcataatgggtaatcaggaccactgcgcacTAATGACA
ACTtggtccaaaattttgaaaatctttgaatatttttgcgtctagccaac
cggAAGCCGTTTTGGAGGCGCaaccagtcctgattacccatgattcattt
cgacatTAAAATGGCCTATAAAGCTAGAGCATCCGACTATGGTTCAAAGG
CTCAATCCCTTGCCTGGTAATACCAAAGACTCCAAAattgtacttgatgc
ctctctgcttgatatTCACGGATAAAGTGTGGCATCCTTTAGGGCCATCT
TTGACTTCAGCCAAAGCTTAGAAAGCTTTAATATTTTATACCAGTTTGTG
GTTATGATAATAATGTTCCCGctaaatcattttcataaatttttatattt
tgagtaTTGTATTTTCGTTAGAGTAAACCCATCGAGTTTAAAGCTGCTGg
gtgggaaatgaagccacttatatCCCGTCTGAAACGCGTGATCCAGCGCG
TGGCTTTCACACAAACgacagattgaaagtaaaatccaacgccaacaatt
tttcgaaaaatatgc
Run BLAST on NCBI

transcript from alignment at scaffold_478:485203..500295+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068016 ID=TCONS_00068016|Name=TCONS_00068016|organism=Clytia hemisphaerica|type=transcript|length=15093bp|location=Sequence derived from alignment at scaffold_478:485203..500295+ (Clytia hemisphaerica)
atATCAATAAGTCAGCACCAGATGGTAGGTTTGGATGGATATCATTTCCT
ATTTCTGAGTATGCCAGGGATTTATTTGAGTAGGGATTTATATAAACATA
TCAGTCTATAAGAGAGTCTTCGGTTTCAAAAGTTTCCAACTTATCACAGG
ATCAAAGTCCACTGACTTTATATAAACCCTGGAGGcggtttctcaatccc
ggccaaccaAAATCCCTAGCCTAatgtaccctaatggtagcactagtCAA
TAGCGGTGGAAaagcatcgagagcgctagaccTACTTTTACTCTAATAAT
TGTGATGATGTAGTGCCGtttgacgttaatttttaacactgcaatggctt
ttTTGCGGGTACCACAGACTTTCATAAGCATCCTGTGATAagttatgaat
ttttgagaccgTAGACTCTCTTATAAGCGAGTATATGCATCTGCTTTTTA
TGTGACGAGGACGGTTGGCTTCTGGGGACGATAGTAGACAAGAACTTTAA
ccgcccagctggcacacaacgttgtttcaacgtttatctaacgctATATG
GACATTATGAACCTTAGAAAACGTTgtcaacgttgtgtgccagctgggag
tcTTCATTTTTGGGATCAAGTCCGGTTGGACTGGTCGCTGGTTGGATTCT
TGACTAGTTTTTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNCCCGACCTGGTCAAGGAAAGTCGGCTTTGCTGTTAAACGATATTC
TGCGATTTTCCTTTATTGTTGGTGTTGAGATGATATTGATAGTGTCGAAA
GTTTAGCTTTTTTCTATTGAAATTCTTAAACtcttaatttaatttttaat
ctcTGAAATCGTCGTAAACCAAAAAATTGTTCAGTTTAGCTAAAGTGAAA
TGATCAAAAAGTATTCAGTCCTCTAACATAGGGACTGTGAGACTTTGGCT
ATTTACCTGTAATCAGGACTTTTTTGGGAACTAAAATCTGTTAGAAAGCC
TTGAGGAGTGATTTTTACATGTCATTATTGATGTTTATGTTTGCTCTTTT
TTCTATATGCACTTTCAATATGTGCAATAGTTTTACGTTTTAACCACTTT
GTAATTTACGTTTTGTTTGCAGCCTAGATCGTTAATAAAGGGCGCCCACC
CTTGACTTTGATTGAATATCCGCGTTCATTCGAATAACATGCGGCATATA
TTTCTATTGTTGATCTCGTATGAAGAATTCTAAGTCACGTGTATGACAAA
TTTCGTGTAGACGTTGATTAGATATAATTTTTCGATAATCTTATTTTACA
AACTTTTGACCATTACGTATCATTCGCCGAAGAAAAGAACGATAACTAAC
ATTCAATCTTTCAAATAGATTTTTTGTTAGGTTCCAGTTTTGACACGCGT
ACGAAAGTCGACTTCTCACAAAACTATTGAGGAAGTTGATTCGGGTGGGA
AGGTTGATTCGCTGATTTTGAAGGAGGTTTGACATTTCGTTGAATTTTGC
AGATGCCAATTGAATACGATTATTGACTTCTGAATTTCCGGTATTGGGCT
CGTCATGGCTGATTatcagagttttgaaatatttcgcgtggatttaattt
cgcgaataagccagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAG
TAATCTGTTGGATCCGTTTGATTGTGTAAATTCCTTCAGTTGTTCCCCTA
TCTTTCCGAAAACCATTATGTTCGTCACTTAGTTGTAGCTCGTACCAAGA
ACAAAGTGAAAATATGAATCAGGctgattcatgatatgcaccatcacaat
atcttccacggacccaataACTGATTGGCAGcttattttacgtcacttaa
aaCCAATCAGCTGCTGAGTGCATTTATGATGTAATGTCtacagaagacat
tgcaatggttcATATCATATCACGAATTCAGGATATGCACACATTCtaat
aaataacgagattgctcacgagaATTTTTAACCTGCGTGAGAAAACCCGC
Acatgtcaatcattttttagacttgtcaatcattttttagctgctttttt
ttcacttgtggtgaaatactgtacttgacGACTTGAGTCAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNTCGagtggattcttgaccagttgggg
ggctggttcttgaccaggtcgggtggattcttgaccagttggggggcagG
TCCTTGACCAGTTCGCGGGTAAATTCATGACCAGAAAGTCAGATTCTTTA
CCAGCTGAGGGGTGGGTTCTTGACCAggttttttgtaagattttacgAAA
TCGGGTCAGTAAAATAAGTCccgggtggattcttgaccagtttCAAAAAC
TAGTCAAGAATCCAACCAGCGACCAGTCCAACCGGACTTGATCCCATTTT
TGTGATTCAAAACTCCACCGCCCTCGTGTAGATTCATAAACTCGCTGAAT
ACCTCTTCTACTGAAATTTTATATTATActgagttttatttagtcggggt
tttttttcgtcggggaaaactttcgtaacctagaggcattttcgtcaatt
tcccccgaccaaaatttcaaattcgtcacttttccctgacgaaatttaca
atttagtcactttcacccaactaaattgtccaaatgaaatagtttccttc
actagctcaaAAAAAGATCTtataattcgacgtttaaagcactaatttca
gttaataaaggtgtaaaaaatttagtttttgattttggttggggtttaaa
aaattgggtaaaagctTTGGTCGAGGATAAAATATTAaggaaaaaattcg
tcgggggaaaatttcgtcaccccctcaaaattttcatctctttcccccga
catttttttccccgataaggtaattcgaatctttctctaatagTAATAAc
tcgaataaatatttttggtcccatgaagatcgaattagagatcTAGAGTC
AACTATATATCTTCTTTCTTGCGGATAAAAGCAGACATAGCACCCACATC
AAGACCAAGCTAAAATCTTGATTATAAATCATTTGCAACGCCCTTCGGAC
CACGTTCACACGCTGAGATTTTTActtcacttctaaccaatagagtGGCT
TCATTTCATTTCTGAGCGAAACGGAAACGTTACTTGCGAACATGGTCTCA
ATCCTTTAAAATGATGACGTAAACTAACACAAAACACTGTGTCGTCAGAC
CAGAAAATTGTcgttttgtctattttcctgaAAAGTTACGAAGTTTTAAC
ATCCAATTACTAAAACTAAATATCTGAGCACATAATTAGTTGAAGGGGAT
ACTAAGTACAATGTCAAACGAAAAAGAGTAAAAATGTATAGCATCTTACG
ATTAGCTACGATTTTGATGTAGAGTTCATTGCTTCTCTTGATTACCTTTT
TTATTCCGGCAATATCTCTGTATTCTCGGTGGTCCTATAAGAAACAAGTG
AAAATTATCATAAGTGTAGGGTCTGAAACCTAAAATTGGTTTCATGGCGT
TCTCAAGTTGAGTGAAGTGTAGGTGTTTGTACATCTTCTgaccagtggcg
ttgtggcaggggggaccggggggggccatggccccccagcggagcttttt
tgaatgggcgccgaagagcaaggggcgccaaaagagatttttttaaacgc
cccaatcttaaaaatcatactttatgcgtcTTAAATTGCGCCCTaagacc
aattttactgagataattttaaattacttgaaattttcgctcgcttcgct
cgcaataaagttagTTGGTAACTTcttgcaatctagctaatttacaagtt
ttttttgtacaatatttaaatgaaaatctaactgtgCCCAAtaccaattt
gctgacaacaatattgacaTCATAAAACATCTTGCTTCGCTCTCATTACA
CATTGTtccttttcactctagcaagtgtcaaattcgACTATTTCTATTTG
gcgatttagggtatcttggtggtcgattttcaaaatttttctactCGGCC
CCAACCGtggtggggcctgtttttcccttttccattcatcaaaaaTACAT
CTACTCTTATCCACTAAAAATTTCCTTCATCATTATGcttaggcaaatga
attagtaaaaagTTAGACATTGGTGGGTGTGGacgccactttggaaaatt
gggggcgCCATCAAAGAAatattgactttggcccctccagaaaaattttc
ccacaacgccactgcttCTGACATCAAACGATAAAAAGTGCAATGCGTAG
GTAAAATAATCATTTTGGCGTCAATGGGATGTCTTCTTTcacagctggca
cacaacgttgtttcaacgttcatctaacgttatatgacgttgtgaacgtt
ggataaacgtcaaaacaacgttgtgtgccagcggggtttctgaaatattt
ttcagccACCTAAGAAATTGATGTCAATGAGCGTTTGCTCGGCCTGTAGC
ATTAGAACCCCATGATTGgttttgatcatttaaaaactCAAACATCATCT
CAAAAGCTCAATACATGATATGTACCACTGCAATGGCTTCACGAAATGAt
gcattttttctgtttttgttccaccaaatacgtcactttttctattgttt
aagtgacgtattgggtggaatattttaaaagttctcagaagactctacAG
TAGTCCATGTCATgaattcaaaaaatctttcattttctcATGTTTAGAAC
TGTTTACGACGGAATACAATTTCTTGGCAGCAACGGTGGTATCGGCAACG
CAGAAAATGGATGTGGCAAACCAGCCGTGCAATAAATCAAAGAATCGTTA
CGACACCGTCAAACCTTTTGATAATAATCGAGTCAAATTGACAAAACTAA
TAAATACAGAGGTAAATACCGTCGTCGAGACGCCGAAAAAAAACGCCGAG
AAAATCTTCTAGATCATTAAACTCAAACCGGACTTTACAAACATGGAATT
TATTCATCCTTTTAGGGTTCTGACTATATCGATGTATCCTACATTGATAC
GTATAAGAAAAAGGGAACTATTGCTTTCGTTCGAATTACAGATGTTCGGA
TTAGAGAGAGCTGActgtattttgtaaatattttaggGTTCTGACTATAT
CAATGTATCCTACATCGATTGTACGaacaagaaatcttttacagGCAAAT
AGATAATTTCAACTTGAAAAAACTCCGAAAACTTCTAAACGTACTGTACA
AATaggggtttttattttagggtTCTGACTATATCAATGCATCTTATATC
GATACATATACAAAGAAGAAATCTTTCATCTCAACACAAGCACCACTCGT
GGGAACTGTGTCCGATTTCTGGCGAATGATATACGAAAATGAATCTTGGG
TCATTGTAATGCTCGGCCAGGAAATCGAGAAGGGACAGGTATGAGACTTA
TAGGATTGCATTCACTGACCTtaatatatccctggaccaagctatatccg
ccttctttgatggaaatttttttggaataggTACCCGAGAAGGAggcatt
gcagtgttaaaagttAACGTCTAATGGCGCTATAACATCAAAAGTTTTGG
AGGGAAagttagggtaccactttttcaaaaacctcCAATAGAAAGttttg
cttggctggggttgagaaacttggtccagggatatataaaggtcagtggt
tacactcaacgttgtttcaacgttcatttaacattgttgaCGTTACGGAT
GTTCGGGTGGAAATTGAACGAAATAAGAAGCTTTTGGTGGCTTCCATGTC
TTAAAATAGAGTCTATGATATAAAATTGGACTTATTTGTATTTACTCTGA
ATTCAAAAGCAAACCGAATCAACATAAATCTTCTGAGAATGTTTCAGACA
TCTCAAAAAACTGATTAAGACCTTGCAAGTTTTCGAAGTTCTTGCAAAGA
CAAGTTTTTTAATCagagttgaaatttttcaatacggCACACCCTGGAAC
TAGTACTCTGCAATTATTGAAAGAATGNttccaccggggctgtgaaacag
gggtgtactCTGCAATTATTGAAATAATTGTAATCATTTCTTTTATTGCA
GCTAAAAGCGGATCGTTTTTGGCCAGAAGAAGGTTACGTAATGGCTTTGG
GACATCTTTCGGTCAAATATGTTTCATTTCAAAAAGACGGTTTGAAGGAT
GTTGTGATACGACAAGtggaaattcaaaataataaggTAAGAAAAGAATT
TGCCAGGATTGGTATAGAGTAGACGATGCTATCAtccgtataatatatta
ttatgatataacatagtttgtatattataaataagtaatatgttgcgcgg
cggatagagtctgtgtttccAACACCTACCCCCGAAAAAAactcccgtct
tcacgtttgttcctatTAGATGAAACTcatcttagactatagcatagtct
aggtATAGAGTTGTCCGGGGCCAATCCACCTATCAACCCATAACAGTGCG
GTTGGCTTCAAAGTGGACTTGTAATAAATTTACAAGCAAATAAccttaaa
attttttgtttgtaaataTGTCAATGCAAAGACTTCTGATATTTTGACAT
CATTCTTCCTTGAAAACTCCAACCCAGCCAGTTTCCTCACGTTTTAAAGG
TTGATAGCCGTGTTGCACAACAACTTCAGATGTTTTTAATGTCATTCGAT
CCAAGAAAACCCAGGCAAGGCCCGAACTTCCCAAAGTTTGTCAGTAAACA
GGTTGATATTTGTAATTCTCCCCAGATGGCAAACAATGCTGTTTCAGTCA
TATACATTATGAAAATTTCACCCtataagttttattttttctcaacGCTG
ACGAAAATTAGtagttttacaaaaaatttagaTTATCGTCTACCTCGACA
CGATTTTCTGCTATCTGATTGGGTCCCATCACCTGGTGACTGGCACATGT
CAGACTTTCAATTTACGATATGTGCCATTGCATCACGGATctaatagctg
attggttgtaagtgacgtaaaatcagtcaatacttCACGTTCAACCAATC
ACCTGTTGGGTCTGTGGAAGACATTgaaatggtgcatatcatgaatatca
aaatagcacaccgctatgcaaacgtcataattattacttttaacatttga
ccgaaattcaatcccacaatccttttcatcttgattcgtaatgcgtGAAA
GTTATCacttttgtattgtcaataaGTGGAATTGAATTGCAAGagcaatt
aatgcaaaggatgatgggattaaaactcggacaaacagtaattttgatct
ctatttttagaatcactgTGGTATGCTATTCACatgttttcaaaactttt
tagactGACGAAAAGAAGTTGGTACAACTGTACCAATACTTGACATGGCC
AAGCCATGAACACATTTCATCGGAAAGTATTCATTCATTGGTCCAGCTTG
TCCACCAATCACAAATGTGGAaagagaaattgaaagccaaaacaatcaca
atcgTCTCAAGGTAATCAATTCAATTGGTTTAATGTCACTGATCTCTgac
tacttgactggatcgcCTATATCGCCTATAACAGTTATGGGATAGTATCG
CCTAGGACTAGTCAGGCTGCAGTCACAGACTACACAAGCCGATATTATCA
CATAACAGTtatcatattatcatataacacccatattaccGTATCACACG
GAATATAAACGATTCTAGTTCGGGTCCAGTTCACAGCCTACACTAATGAT
TCAGGGCAGCAGAAAGGATCGCTCCAATGGTCATTACGGATTTCAACTCG
CTTATATTTTGCAGAACGGAAAAGTGCGGGTGATATTGCCGCCCAGAGGT
TGAAGGGCgaaacaaataaaatttaacCTTTTGTTTAATTCCTTAAACAG
TCTAAtaaatttcttcttatttttcgcaGTTCTGGTATAGGAAGACCAGG
AGTATTCATCGCATTGAGGTATCTTCAAGAAGAAAGTGAAATTGAAGGTC
ATGTCAACATCTTTCAAGCAGTACAAAAATTGAGACAGCAACGTAGTGCT
CTCATTCAAACAAGGGTGAGTTTACATTGGAGATTCATTTCCATACATCG
TGTTtgttttgtaacatttttatttattgttaCACCCCTGTGTTACCAAA
cacactgggaccccagccccacttgaaaatttggcaaaaatttggttccc
ggtgggaaaataccctggaatttcagccccactgggaaattgactttgat
ttcatccccactcgataATCATTGTccaaaaattgcactctaaaaccatc
cccactggaatttttaaacttgtaataaaaaatttctatccccattgaaa
tttcaatatggatctttatccccactgaagaaaaaaatttccaccggggc
tgtgacacaggggtgttgcAACGGATGTTATTTGGACACCAGTTTGAAGT
TTTGTGTCAGTTTGGTTATCTGTAGACAAAAGATCCGTCCAGCATTTTTA
TAATATGATGTAAGCAAGATGGGTTTAACCTGTGATAATCTGAAATTTAA
AATATAGCGCTGTTCTTacttaataaaataaaaacaggttttagaaactt
tttttctaagaagtgtGCTGGGTGTGATCAGTGAAAGGAAAGGATCATCA
ACTACTTcgcaatttttataaaaagaagaaaccaTAACCATGGCGGGTTT
TCATGTTGGGTTAGGCCGAAGGGAGGGTCGCTCGAAGTAAGCGATCTGCC
GTAGGTGCGCTTCTTACGGGTAAGTTTCCTATGCTACTCAAAGTGATCGA
AATTAAAGATTGGAGAATTTGTTGGCTTAAAATTGTTTGGAGTCATAAAT
GTTAAATATTCCTCatttttactgtttttctgttgttttttttcaggagC
AATACATTCTGATATACACTTCAGCAATGGAGATTACCAAACATGTTCGA
CGAAAATCGATTGTTACCGAATCGTTAGCAAACGGAGTCGATGTATCGAC
AATCGGATTAAATATCGTTCCACACTGTATAAGTGAAAGTGATTTTATTT
ATGAACGTTTAAACTCGGTTTCGAGGACTAGTGAATTCTAATCGACCGTA
TGGTGATGCATTCTAATATTCATTTAGTAgcgttagatggacgttatttg
gacgttatatTGAATGTACAGTACAGTAAAACCTcgtttattcgaacttc
tactattcgaatctttctataattcgaacttgtttccagtccccGTCATG
GGGAAACCcgcttaaaatactttctaatTCGAATCCCTCTGTAATTTGAA
CAAATAACATTCCCCGTTCGGGTTCGTATTAACGAGAGGCAATTGTAGTT
GTAATGAAAGGTTAAATAGCCGTTACGTTATTTCGAAAATTACAGGACGT
ATACGAAAGCTTGAATTTAGACAAGAATTGTCCTGTACTTTCATAAGCTG
ATGTATATACATAATGGGTTCGTGCTGTGAGTATATTTTCAGACATAAAA
ATGTCTATTTTACCTCTGGAGCGAGAATAGAATGCCGCTTTTTGAAAaca
actaccttatcggccctttttacgccagccCTAATTTAATGCcagcccct
tttacgccggcccttattacggcaagagcctaaaaataacgccaataagg
gccggcgtaaaaagggccgataaggtattttctGATGGAAATTCTTTTCC
GGGAAATCTGCATTAGtagaaaagtcttttttttaaatacccgTTCTATT
TGCTCTACTACACTAGCTTCGCATGCATTTTAGAGGCACGGAGCTTGTGA
GAAAATTGACTAGTAGGGGCTGGACCAAACTTTGACGACTTTTTGACATG
ATTATATGCAAAAAAAACCAGCATATTCACATTGTAAATTGAGATTCNTT
GACGACTTTTTGACATGATTTGATATATGCAAAAACCCAGCATATTCATA
TATTGTAAATTGAGATCCTATATTCCATATAAATTGAAAGATGATTTCAC
TAAATTTTCTTGTCTCCACCACCCAAAACCTTGATTTTTCTCAAGGATCT
TGAAAATACATCAAGCTTTTTTGCTATTCTTTGACGTAATTAATTAATCA
TATTAAAGTTACAGCTTAATAGATGTATTTCAAAATGATACAAGTTACTC
GAAGCTGCATTTTTTTCATCCACAGTATACTTTTGATGATATTagtttac
aaagattttctgGCATTGTGGTAGACCTGATGATCTAGGAAGTCACTTTC
ATGTTTAGTTTtagccactgacctttatataccatggaccaagtttctca
atcccggccaagcaatatctttgatcggagttttttgaaaaatagcggtg
taaatgcatcgagagcgctaaaTCTACGttccctcgaaaacttttgatga
tgtagcgctgtTAGACGAAGATGCAGATATAGCTTGGTCAAggaatatat
aaaggtcagtggttttaGTTCATTTGGTATCATGGATTTTACTATAACAT
AGATCAGAAAATCATAGAAAACAGCCCAGCTGACTTTTGTGGGCGATGAT
AGAACGCAATCCTTaatataggccatttcacaatCGCAAAGcataatggg
taatcaggaccactgcgcacTAATGACAACTtggtccaaaattttgaaaa
tctttgaatatttttgcgtctagccaaccggAAGCCGTTTTGGAGGCGCa
accagtcctgattacccatgattcatttcgacatTAAAATGGCCTATAAA
GCTAGAGCATCCGACTATGGTTCAAAGGCTCAATCCCTTGCCTGGTAATA
CCAAAGACTCCAAAattgtacttgatgcctctctgcttgatatTCACGGA
TAAAGTGTGGCATCCTTTAGGGCCATCTTTGACTTCAGCCAAAGCTTAGA
AAGCTTTAATATTTTATACCAGTTTGTGGTTATGATAATAATGTTCCCGc
taaatcattttcataaatttttatattttgagtaTTGTATTTTCGTTAGA
GTAAACCCATCGAGTTTAAAGCTGCTGggtgggaaatgaagccacttata
tCCCGTCTGAAACGCGTGATCCAGCGCGTGGCTTTCACACAAACgacaga
ttgaaagtaaaatccaacgccaacaatttttcgaaaaatatgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042465XLOC_042465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068016-exon-scaffold_478-1491911889:485203..485226TCONS_00068016-exon-scaffold_478-1491911889:485203..485226Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1510915933:485203..485226TCONS_00068016-exon-scaffold_478-1510915933:485203..485226Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1575043694:485203..485226TCONS_00068016-exon-scaffold_478-1575043694:485203..485226Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1491911889:493900..494063TCONS_00068016-exon-scaffold_478-1491911889:493900..494063Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1510915933:493900..494063TCONS_00068016-exon-scaffold_478-1510915933:493900..494063Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1575043694:493900..494063TCONS_00068016-exon-scaffold_478-1575043694:493900..494063Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1491911889:494423..494590TCONS_00068016-exon-scaffold_478-1491911889:494423..494590Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1510915933:494423..494590TCONS_00068016-exon-scaffold_478-1510915933:494423..494590Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1575043694:494423..494590TCONS_00068016-exon-scaffold_478-1575043694:494423..494590Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1491911889:495254..495388TCONS_00068016-exon-scaffold_478-1491911889:495254..495388Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1510915933:495254..495388TCONS_00068016-exon-scaffold_478-1510915933:495254..495388Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1575043694:495254..495388TCONS_00068016-exon-scaffold_478-1575043694:495254..495388Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1491911889:496506..496663TCONS_00068016-exon-scaffold_478-1491911889:496506..496663Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1510915933:496506..496663TCONS_00068016-exon-scaffold_478-1510915933:496506..496663Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1575043694:496506..496663TCONS_00068016-exon-scaffold_478-1575043694:496506..496663Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1491911889:497082..497217TCONS_00068016-exon-scaffold_478-1491911889:497082..497217Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1510915933:497082..497217TCONS_00068016-exon-scaffold_478-1510915933:497082..497217Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1575043694:497082..497217TCONS_00068016-exon-scaffold_478-1575043694:497082..497217Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1491911889:498049..498999TCONS_00068016-exon-scaffold_478-1491911889:498049..498999Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1510915933:498049..498999TCONS_00068016-exon-scaffold_478-1510915933:498049..498999Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1575043694:498049..498999TCONS_00068016-exon-scaffold_478-1575043694:498049..498999Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1491911889:499067..500295TCONS_00068016-exon-scaffold_478-1491911889:499067..500295Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1510915933:499067..500295TCONS_00068016-exon-scaffold_478-1510915933:499067..500295Clytia hemisphaericaexon
TCONS_00068016-exon-scaffold_478-1575043694:499067..500295TCONS_00068016-exon-scaffold_478-1575043694:499067..500295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:485203..500295 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.389386	0.281867	0.172092	0.0830302
Blast
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BLAST of TCONS_00068016 vs. Swiss-Prot (Human)
Match: PTPRS (Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens GN=PTPRS PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.202e-43
Identity = 93/255 (36.47%), Postives = 146/255 (57.25%), Query Frame = 3 
Query:   75 TQKMDVANQPCNKSKNRYDTVKPFDNNRVKLTKLINTEGSDYINASYIDTYTKKKSFISTQAPLVGTVSDFWRMIYENESWVIVMLGQEIEKGQLKADRFWPEEGYVMALGHLSVKYVSFQKDGLKD-----VVIRQVEIQNNKTDEKKLVQLYQYLTWPXXXXXXXXXXXXLVQLVHQSQMWKEKL-KAKTITIVSSSGIGRPGVFIALRYLQEESEIEGHVNIFQAVQKLRQQRSALIQTREQYILIYTSAME 821
            T +   AN PCNK KNR   + P+++ RV L  +   EGSDYINAS+ID Y ++K++I+TQ PL  T  DFWRM++EN S ++VML +  E G+ K  ++WP E         S +Y  F  D + +      ++R+ ++ + +  + + V+ +Q+  WP  E    +S    +  + Q    KE+  +   I++  S+G+GR GVFI L  + E    EG V+IFQ V+ LR QR A++QT ++Y   Y +A+E
Sbjct: 1694 TSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGREKCHQYWPAE--------RSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWP--EQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQFCYQAALE 1938

HSP 2 Score: 140.198 bits (352), Expect = 1.915e-33
Identity = 80/243 (32.92%), Postives = 131/243 (53.91%), Query Frame = 3 
Query:   93 ANQPCNKSKNRYDTVKPFDNNRVKLTKLINTEGSDYINASYIDTYTKKKSFISTQAPLVGTVSDFWRMIYENESWVIVMLGQEIEKGQLKADRFWPEEGYVMALGHLSVKYVSFQKDGLKDVVIRQVEIQNNKTDEKKLVQLYQYLTWPXXXXXXXXXXXXLVQLVHQSQMWKEKLKAKTITIVSSSGIGRPGVFIALRYLQEESEIEGHVNIFQAVQKLRQQRSALIQTREQYILIYTSAME 821
            +N   NK KNRY  V  +D++RV L  +    GSDYINA+Y+D Y  + ++I+TQ PL  T  DFWRM++E  S  IVM+ +  EK ++K D++WP  G     G + V  +   +  L    +R   +  N + EK+ V+ +Q+  WP  +H   E     +  + + +       A  I +  S+G+GR G FI +  + E  + E  V+++  V  +R QR+ ++QT +QY  I+ + +E
Sbjct: 1411 SNLEVNKPKNRYANVIAYDHSRVILQPIEGIMGSDYINANYVDGYRCQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRG-TETYGFIQVTLLDTIE--LATFCVRTFSLHKNGSSEKREVRQFQFTAWP--DHGVPEYPTPFLAFLRRVKTCNPP-DAGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLE 1647
The following BLAST results are available for this feature:
BLAST of TCONS_00068016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRS2.202e-4336.47Receptor-type tyrosine-protein phosphatase S OS=Ho... [more]
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