TCONS_00068012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068012
Unique NameTCONS_00068012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068012 ID=TCONS_00068012|Name=TCONS_00068012|organism=Clytia hemisphaerica|type=transcript|length=1406bp
AAGAAACTTAAAGAAGTGGATAAATTATACGGGAAATATAAAATGCTTCG
AAATTATATTAAACGATGTCTTCTCATCTTTAATATAGCTACTGTTACAA
TATTTgcaaagaagcttttacaatTTCAATCCATCCATCAAAACACTGCT
ATCGAGGGTCCCGAACCATGGTTCGATGGACAAGTAACACACAAGGATTT
TTGTTTtcacaaatgtgttaaaaattACACTCACTGCTTTTATGTTCAAT
ACAAAGAAATCGATGCTACAACCTGGCTGTGTAAACTTTTTGCACTCATA
ACAGATTTGTCCAATCATTTGGTGGTTTCAGAAGGGGAAATGTTGGCACG
TTCATTTCATCCAAATGATTATAGTGGAATCGATTGTCAAACGCATCATG
ATTTTGGACACAAAACTTCAGGTGTATACAATATCACACACAACGGAAAA
ACAATGACTGTGTATTGCCACATGTTTCCAGATGGAGGATGGATAGCTAT
TCAAAGAAGAGTAAATTTTGAGGATCTTTCCTTTAATCAGAATTGGGAAG
TTTACAAGGATGGTTTTGGAGATCCAGCATCAAACCATTGGATTGGTAAT
GATAACATTCACTACCTGACCACCGGCAGAAACATGGATATCATGTTTAT
TGCAACAGCTTATGACTGGTCAGAAATAAATGCTCGATATGAGGGTTTTT
TCATCGAGGATGAAACCGCCAATTATAAAGTACATTCAGGCACATATAAA
GAGGGTACTTCAGTCGATTACAAAGcCGATTGGTTAGACAATGATGGTAT
GGAATTCTCGACTCCTGATCGCGATAACGATTTAAATTCCGGCGGAAAAT
GTGCTCAATACAAAGAAGGTGGTTGGTGGTTTAATTCCTGTTCAGAAATC
TCTTTTAATAATGATCACAGAAACAACCAACCAGAATGGGACAGTTGGAT
TAAAAGCTCTACTATTACTAGAACATTGATGTTGATTAGAGaaaatcgaa
attgaaagaGTGTTCGTGATTCATGTTTCATTTTGTTGTTTGAAAATCCG
TTGCGCACAAACTATAATGAAAAAGTTGAGGCTAAAGTCCTACTAAAACA
TTGATGTTGATTAGAGAGAATCGAAATTGAAAGAGTGTTCGTGCTTCGTG
TTTTATATTGTTGTTTGAAAATCCGTTGCACACAAACTATAATGAAAAAG
TTGATGCTAAAGTCCTACTAAAACATTGATGTTGATTAGAGaaaatcgaa
attgaaagaGTGTTCGTGATTCATGTTTCATTTTGTTGTTTGAAAATCCG
TTGCGCACAAACTATAATGAAAAAGTTGAGGCTAAAGTCCTACTAAAACA
TTGATGTTGATTAGAGAGAATCGAAATTGAAAGAGTGTTCGTGCTTcgtg
ttttat
Run BLAST on NCBI

transcript from alignment at scaffold_478:421355..427933+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068012 ID=TCONS_00068012|Name=TCONS_00068012|organism=Clytia hemisphaerica|type=transcript|length=6579bp|location=Sequence derived from alignment at scaffold_478:421355..427933+ (Clytia hemisphaerica)
AAGAAACTTAAAGAAGTGGATAAATTATACGGGAAATATAAAATGCTTCG
AAATTATATTAAACGATGTCTTCTCATCTTTAATATAGCTACTGTTACAA
TATTTgcaaagaagcttttacaatTTCAATCCATCCATCAAAACACTGCT
ATCGAGGGTCCCGAACCATGGTTCGATGGACAAGTAACACACAAGGATTT
TTGTTTtcacaaatgtgttaaaaattACACTCACTGCTTTTATGTTCAAT
ACAAAGAAATCGATGCTACAACCTGGCTGTGTAAACTTTTTGCACTCATA
ACAGATTTGTCCAATCATTTGGTGGTTTCAGAAGGGGAAATGTTGGCACG
TTCATTTCATCCAAATGATTATAGTGGAATCGgtaaatagatttttttat
atctttaatATTTTCCCTTGGGGAAGGAGGTACCCCttggcaaaaatggg
tgctgggtatgcgCTGACGGTAAGGGTCAGTTTTTTTACCTTTCAAAATC
TCTCCATGGGTTGCAAAAATGAGAAAGATTTTAATTAATGTCTCTAAGGG
TTGTCGGTTCTTTCAAAAACTCAAGTTAAAAAAGAATAGTGAAAAGTCAA
GAAAAGTAAGAAAACTTTTCGACGGTATTGGAGAATTATTATGAAAATCA
AAGACATTTTTGTGGAAATGTCTTTCTAACCCTTTCCATGCCATTTGACC
AAAATGTTGGTCATTTTGGTGCttcaaaaagaaagtaaaatgaAACATTG
AAATTTAGCTTGATAATGATAAAGatctttttgaaaagataaaaacaaag
atttacagCTTGCTGATTTTTAAAACTATGTTTTGGTTTGAAtggttttt
tttattgtataaaaCCTTTTAGAAAAACACTTATTATCAAAGTTTATAGA
AAGTGGAACAAGCataaattcaattttgaaacGGAAAGGGCTAAAGGTTA
CTTTTTAAGCAACTATGTCTCTCTAAGAGtcactttttcagcaaaaatta
ttttctataagggtcgattttcgggGGACCCGTCTACACATACCTGTTAT
CCGCCAACCCTATCACCCCCTTgggatttttcacttttttaaattCGGAT
AAACTTTACTTTCTCTTTTCAGATTGTCAAACGCATCATGATTTTGGACA
CAAAACTTCAGGTGTATACAATATCACACACAACGGAAAAACAATGACTG
TGTATTGCCACATGTTTCCAGATGGAGGATGGATAGCTATTCAAAGAAGA
GTAAATTTTGAGGATCTTTCCTTTAATCAGAATTGGGAAGGTAATGTATT
TTGTACAACCGAACATTTCTGGTATAATTATCCCTTGATAAGTAGCAGGT
TCAAAacacttcaaaaaattttcttctctcTTTCTTTTTAACCGTCATCT
CTCAACTACCTAGTACCCCATAGATCTATACACATAACTGGGCGGATTAC
TCCCCACCAAATCTAGCTGGATGGGCGCTCTCCACTTAAAAGAGTTTACT
TTGCCTTCCATTTCTCGGGTCACCTCTCGCAGTTCTTAACTAGCAGACTA
CCATTATCGACAGTCGAACTAAAAACTATttacttacatgtttttttttc
tttataagcattgcgCTTATAAGCATAACTAGGCTCAtatatatggcaaa
aatttaagcgTATGCTAAACATTACCTTAAGCCTTCATACTCAGAATTTG
TTTCTTTTTGACTGGAATTTAACGGAATttcgaaatttctctaaaatttt
gcttaggaTACAAGCATCCCTCAAAGCAATTTCCAGCTTTGTAAATCTCT
CGATGTAAGCATTTCCGAGCcagcttttggatttttttatgcttataata
aaagaACATGTATTGCNGTGACCTCTCACAGTTCTTAACCAGACTACCTT
TATCGGCAGTCGAACTAAAAACTATTTACTTGTCGTTTTTAGTTTACAAG
GATGGTTTTGGAGATCCAGCATCAAACCATTGGATTGGTAATGATAACAT
TCACTACCTGACCACCGGCAGAAACATGGATATCATGTTTATTGCAACAG
CTTATGACTGGTCAGAAATAAATGCTCGATATGAGGGTTTTTTCATCGAG
GATGAAACCGCCAATTATAAAGTACATTCAGGTAATTTTTTGACTAACCT
TACTTATTCTGCGCCATTTTCCGTATCAATCAGATACGGAAATTCGATAC
GCCCATGTCCTTCGCTACTTTCAGCCGTTTAAATTGGAAGATCAAGGTCA
GATCGAGTTTTGTCGCCTAGTTGTTTCTTAGGTATCCCTGGTGGTCGTTT
CTTTgtgaaaacttgaaaatatatGTTCACGTGCTTAAGTAAACAGCAGT
GAAGATAAAAACGAAGATAAACGAGATTTATGACGAGAGTTTTTCGCGAG
ATGTTTGCAATTTTACGGAAAAGAGACCCTTGAAATGAAATTGCCTAGAT
TTACGTCATATATTTTGATCAGAATTTGGCTGAATTGACCAGGCCCTAAA
TCAAAACTCctgttataaattttatactAGACCACGATAGTATCTGTTaa
ataaaactttatttttagacTTAGCATCTAGAGAACCGTCTTAAAAAGAC
CAGTCAATATGAAACCTGGCACaatactctaaggtcccgaatagacaTCC
Tcacccgcttattaattttcgaaaaactttcggaccccctccccccgttc
ttattaggaccctcccgtttattaattttccagtttttttgtttttgagt
taAAGTCTAAATCAGGCTTAATCTATTTCGAACGTTAATATAAAGGAAAG
TTCTAAATGAAAGTTCTAAATATTTTCAGCCCCCCCTCTTTTATTCAGAC
ACCCCCTATTATTTGGGACCTTAGAGTAGCCGGATGCTTCTACACAGACT
CAtacttttcatatattttctcGTTTCAGGCACATATAAAGAGGGTACTT
CAGTCGATTACAAAGGTGAGGGAGATTTGTCTAGGACAAAGTTCTACTAA
CAATAGCATAAAGCTTACTTCtagttgaaacattttttccgaCAATCTTC
cagcaaaatagaaaaaaaaacttggaaatACAATATTAAAAGTTAGGTCG
CATTAAAATTGTGTTTAGGTTAACAATTGTATAAAATTGTTAGAACTTTT
TTAAAGCATGAAAAACTGGATGCTGGGATCCGTCGACATGCAGGGGGTAT
GTGCAACCTCACAAAATTTAGTCCTTAGAGAgattaaatttttgtgaaat
aagAAACCCTTAGTGGGACATGAAATCGGCCAAAAGGTTTGATCACgcat
tttttattataagcaacTAAGCCAGGCCTTgagttgcttagcattctagc
ttaTTGTGTGAAAAATTTGCTTTACCATCCCTGAtgttataccatattta
tgcttattgggtcatTGTTAAACAGTTACTTTCTCGCAGCGCACTACAca
actttttgcgcaatgcaattggttcctTTCGAATGACGAAGGGCCTACAC
TGcacagagttgcccgtcgtttaGAAGTTAAttgtgacgtcagttttttg
acgtcagaaagtaaaactattttttatctctttttgctgttttttcgctt
ttttcgctattttttctGCATAAGGTGCGAAAAGTTGATTATAACGTCAC
attcagtttttgcggtttttcgtaaatatcagcgaaaaaacaattaggtt
acacatcaggttaggaACTTCATCATAGTATCCTTCATGTCCAGTcgttt
gtttggtcattttctgtcagCTAATGCAATCTAAagattatggtaatttt
aagaaaacttacCTGAGTTAGCTTCTCACAAAAACAATGTGTACTCCAAA
ATATCTCTTGTATCAGGttttatctataagaaataAAGGTTCTGATGGGG
CTCCCAGAGGGGCTAGCGTGACACGTGAATGAGCCTTTTTTCtgacgtga
atacgtgaattggacttttttagcacgtgaatacgtgaattgagatatca
gcgtgaacgtgaaaataagatttttccaccgtgaattcgtgaatcgagat
ttttagcttgaacgtgaaaagcaaatcattgtctaaaaaattttaaaaat
atatctAAACCTCAACTCCTAAATCTGTAAAGTTTTGTTGCTCGCTTTGC
TCGCATAGTCTTGGATTAACTGCTTATTGTCCTATTAAGTTATTGTCATG
GTAAAGTCattcaaaatgatcaaaactttATATAAcattaaaattctcaa
aaatatctaaacaaatattttcgttattttttaagggcgttttttttcat
ttttaatgacaatttttgtgatgcaaatactgcatccaacgagtGCGTCT
TTAGTCAAAACAAAAGAGTCtagagaaaattttctccgtcagcgtTTAAT
AATGGTCGTTTCTCCGCAGTCACTTATATTGTTACTACAATATACAATAC
AAAAAATGATAGTGCGTTaacttagagattttttttttttttataatagc
gtattaaggccgtttttcagtCATAAAAGGGctgaaagtcaaaaaatttc
gcgcatGCTTCGCTCGCGTTGTTATTTTCCAGGCATTTTCTTCCATGACA
TAGGGGTCAAATATTGGAATTTGCGTCCTATGATTGGCACAACCtcgatt
tgaaattaaaaaagacttCTTACGGGTCTGCGAGAAAGCAAATCCCACAC
CAAAAGCCCACCCTACACCAGAGGGGTAgttctttgtaactttggcgcgg
cagacctaaaaacTGCTTTATTAaggctcaaatagctgtaaaagatgcCT
TAAAAGGTCGACGCTATCGAGAATTAGGTcacaaaactgcagaaaacttc
aTATTAGCGAAAATGTTTtgcataagaataggtcaaactGTTTAAAGAAA
TCATAAAGAGGTCATATATTTAACCcaatactcttaggtgccaagtaaac
ggcccccccccgcttgttaatttttttttaaacctaattttaccttattt
ttgggttttcagaagtacaatttccgaccccccggcaattagggcccccc
cccccccccgcttgttaatttttttttaaacctaattttaccttattttt
gggttttcagaagtacaatttccgaccccccggcaattagggcccccccc
ccccgtttattaaaatttcgaaaattttccaaccaccccgtttattcgaa
ccccccacgtttatttggcacctaagagtaaggtcacaatcgttttaacc
aaaaatataaaagcaaaattggcgcgtgaacgtgaaaatggttttgttcg
cacgtgaatacgtgaattggcaaaattttgtgcgtgaatacgtgaattga
gggtcgactggggggggggctctttgaTGTCAATCCCagttgacacacaa
cgttgtttcaacgtttatataATCTTctcaacgtccatataacgttagat
aaacgttatgGTGCTAGCTGGGATACTTCATGGTAAGCTCTAACCTAGTA
TTAAGAGGTACAGAGAATTCTGGCTTATTCGAACTTTTATCATTCGAatc
actctataattcgaacttattcccTATCCCCGTCAATGAAAAATCTACTT
AATATactttctttctataattcgaaatttgaacaaataaatttccccgt
ttgagttcgaattagagacagtcaactgtattttgacttcttttgtttta
gcCGATTGGTTAGACAATGATGGTATGGAATTCTCGACTCCTGATCGCGA
TAACGATTTAAATTCCGGCGGAAAATGTGCTCAATACAAAGAAGGTGGTT
GGTGGTTTAATTCCTGTTCAGAAATCTCTTTTAATAATGATCACAGAAAC
AACCAACCAGAATGGGACAGTTGGATTAAAAGCTCTACTATTACTAGAAC
ATTGATGTTGATTAGAGaaaatcgaaattgaaagaGTGTTCGTGATTCAT
GTTTCATTTTGTTGTTTGAAAATCCGTTGCGCACAAACTATAATGAAAAA
GTTGAGGCTAAAGTCCTACTAAAACATTGATGTTGATTAGAGAGAATCGA
AATTGAAAGAGTGTTCGTGCTTCGTGTTTTATATTGTTGTTTGAAAATCC
GTTGCACACAAACTATAATGAAAAAGTTGATGCTAAAGTCCTACTAAAAC
ATTGATGTTGATTAGAGAGAATCGAAATTGAAAGAGTGTTCGTGCTTCGT
GTTTTATATTGTTGTTTGAAAATCCGTTANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAAGCTCTACTATTACTAGAACATT
GATGTTGATTAGAGaaaatcgaaattgaaagaGTGTTCGTGATTCATGTT
TCATTTTGTTGTTTGAAAATCCGTTGCGCACAAACTATAATGAAAAAGTT
GAGGCTAAAGTCCTACTAAAACATTGATGTTGATTAGAGAGAATCGAAAT
TGAAAGAGTGTTCGTGCTTcgtgttttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042464XLOC_042464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068012-exon-scaffold_478-1491911889:421355..421736TCONS_00068012-exon-scaffold_478-1491911889:421355..421736Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1510915933:421355..421736TCONS_00068012-exon-scaffold_478-1510915933:421355..421736Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1575043694:421355..421736TCONS_00068012-exon-scaffold_478-1575043694:421355..421736Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1491911889:422477..422644TCONS_00068012-exon-scaffold_478-1491911889:422477..422644Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1510915933:422477..422644TCONS_00068012-exon-scaffold_478-1510915933:422477..422644Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1575043694:422477..422644TCONS_00068012-exon-scaffold_478-1575043694:422477..422644Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1491911889:423297..423485TCONS_00068012-exon-scaffold_478-1491911889:423297..423485Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1510915933:423297..423485TCONS_00068012-exon-scaffold_478-1510915933:423297..423485Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1575043694:423297..423485TCONS_00068012-exon-scaffold_478-1575043694:423297..423485Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1491911889:424284..424319TCONS_00068012-exon-scaffold_478-1491911889:424284..424319Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1510915933:424284..424319TCONS_00068012-exon-scaffold_478-1510915933:424284..424319Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1575043694:424284..424319TCONS_00068012-exon-scaffold_478-1575043694:424284..424319Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1491911889:427056..427504TCONS_00068012-exon-scaffold_478-1491911889:427056..427504Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1510915933:427056..427504TCONS_00068012-exon-scaffold_478-1510915933:427056..427504Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1575043694:427056..427504TCONS_00068012-exon-scaffold_478-1575043694:427056..427504Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1491911889:427752..427933TCONS_00068012-exon-scaffold_478-1491911889:427752..427933Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1510915933:427752..427933TCONS_00068012-exon-scaffold_478-1510915933:427752..427933Clytia hemisphaericaexon
TCONS_00068012-exon-scaffold_478-1575043694:427752..427933TCONS_00068012-exon-scaffold_478-1575043694:427752..427933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:421355..427933 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.471404	0	0.217752	0.227961	0	0	0	0.00236941	0.364967	0.337765	0.54719	0.684425	9.80032	4.63578	5.16131	4.10794	2.56662	3.31113	19.6321	20.5135	9.74086	7.07288	2.86081	5.11602	0.627965	1.73235	4.68701	7.43605	0	0
Blast
[Close]
BLAST of TCONS_00068012 vs. Swiss-Prot (Human)
Match: ANGL2 (Angiopoietin-related protein 2 OS=Homo sapiens GN=ANGPTL2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.646e-27
Identity = 76/222 (34.23%), Postives = 123/222 (55.41%), Query Frame = 1 
Query:  382 DCQTHHDFGHKTSGVYNIT--HNGKTMTVYCHMFPD-GGWIAIQRRVNFEDLSFNQNWEVYKDGFGDPASNHWIGNDNIHYLTTGRNMDIMFIATAYDWS--EINARYEGFFIEDETANYKVHSGTYKEGTSVDYKADWLDNDGMEFSTPDRDNDLNSGGKCAQYKEGGWWFNSCSEISFN------NDHRNNQPEWDSWIK----SSTITRTLMLIRENRN 1002
            DC    + GH TS +Y +   +  + M V+C    D GGW  IQRR++   ++F +NWE YK GFG+    +W+G +NI++LT   N  ++   T  DWS  ++ A Y  F +E E+  YK+  G Y  G + D    W  ++G +F+T DRD+D+ + G CA Y++GGWW+N+C+  + N        +R+   +   W +    S ++ + +M+IR N N
Sbjct:  277 DCLQALEDGHDTSSIYLVKPENTNRLMQVWCDQRHDPGGWTVIQRRLD-GSVNFFRNWETYKQGFGNIDGEYWLGLENIYWLTNQGNYKLL--VTMEDWSGRKVFAEYASFRLEPESEYYKLRLGRY-HGNAGD-SFTW--HNGKQFTTLDRDHDVYT-GNCAHYQKGGWWYNACAHSNLNGVWYRGGHYRSRYQDGVYWAEFRGGSYSLKKVVMMIRPNPN 490
The following BLAST results are available for this feature:
BLAST of TCONS_00068012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL23.646e-2734.23Angiopoietin-related protein 2 OS=Homo sapiens GN=... [more]
back to top