|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068010 ID=TCONS_00068010|Name=TCONS_00068010|organism=Clytia hemisphaerica|type=transcript|length=1296bpRun BLAST on NCBI transcript from alignment at scaffold_478:394435..411069+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068010 ID=TCONS_00068010|Name=TCONS_00068010|organism=Clytia hemisphaerica|type=transcript|length=16635bp|location=Sequence derived from alignment at scaffold_478:394435..411069+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068010 vs. Swiss-Prot (Human)
Match: AGRL2 (Adhesion G protein-coupled receptor L2 OS=Homo sapiens GN=ADGRL2 PE=1 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 1.077e-79 Identity = 154/360 (42.78%), Postives = 221/360 (61.39%), Query Frame = 2
Query: 44 LNSQILSISIFPSTKKTF-DKPVVFTQQHRGITNNSVPNCVYWH--ESTFGSHWSDEGCMVNTWNASHVTCHCYHLTNFAILMSVTDAPKQLS-EDNV--LALSLITVIGITISLGALVISFLSFVFIKAIRSLRNTVHKHLCVALFIAEGIFLFGIDKTGHKIGCQVIAASLHYFFLVAFFIMGLEGIVLYMMLVRVYRSMGTSGYGSPKFIALC-WVLPLVVITVNVFIDQNAYGDINGACWLSIENGFIWSFVGPVLLIVGMNFVFLGLTIKVMTEKA---KRRNTAVEEIWFWTKGVCLLLSILGVTWVFGVLYINQDTLFFAYIFAIVNSLQGLSIFVFHCACDPRVRKAYRDFF 1093
+NS ++S+SI + + + PV+FT H N NC +W+ E T +WS +GC + N + TC C HLTNFAILM A ++++ +D V L L++IT +GI ISL L I +F F + ++S RNT+HK+LC+ LFIAE IFL GIDKT + I C + A LH+FFL AF M LEG+ LY+MLV V+ S Y K+ + ++ P V+ V+ ID +YG ACWL ++N FIWSF+GPV I+ +N +FL +T+ M + + K ++ +E I W G LL +LG+TW FG+L+IN++T+ AY+F I N+ QG+ IF+FHCA +VRK Y F
Sbjct: 749 VNSHVISVSINKESSRVYLTDPVLFTLPHIDPDNYFNANCSFWNYSERTMMGYWSTQGCKLVDTNKTRTTCACSHLTNFAILM----AHREIAYKDGVHELLLTVITWVGIVISLVCLAICIFTFCFFRGLQSDRNTIHKNLCINLFIAEFIFLIGIDKTKYAIACPIFAGLLHFFFLAAFAWMCLEGVQLYLMLVEVFESE----YSRKKYYYVAGYLFPATVVGVSAAIDYKSYG-TEKACWLHVDNYFIWSFIGPVTFIILLNIIFLVITLCKMVKHSNTLKPDSSRLENIKSWVLGAFALLCLLGLTWSFGLLFINEETIVMAYLFTIFNAFQGVFIFIFHCALQKKVRKEYGKCF 1099 The following BLAST results are available for this feature:
BLAST of TCONS_00068010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.