TCONS_00068001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068001
Unique NameTCONS_00068001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068001 ID=TCONS_00068001|Name=TCONS_00068001|organism=Clytia hemisphaerica|type=transcript|length=708bp
CAACATCAATGTTTTAGTAGGACTTTAGcatcaacattttcattatAGTT
TGTGCGCAACGGATTTTCAAACAACAATATAAAACACGAATCACGAACAC
TCTTTCAATTTCGATTCTCTCTAGTCAACATCAATGTTTTAGTAGGACTT
TAGcatcaacattttcattatAGTTTGTGCGCAACGGATTTTCAAACAAC
AATATAAAACATGAACCACGAACACtctttcaatttcgattttCTCTAAT
CAACATCAATGTTTTAGTAATAGTAGAGCTTTTACTCCAACTATTCCATT
GCGCTTTGTTGTTGTCTGTGTGATCATTATTAAAAGAGATCTGTGCACAT
TTCTTAAACCACCAACCACCTTCTTTTAATTGAGCACATTTTCCGGAATA
TAAATCGTTATCGCGATCAGGAGTCGAGAATTCCATACCATCATGGACTA
ACCAATCGGCTAAAACAAAAAGAAGTCAAAATACAGTTGActgtctctaa
ttcgaactgaaacggggaaatttattttattcaaattaaagAGAGATACG
AATTGTAGAAAGTAGATTTTAAGTAGATTTTTCTTTGACGGGGATAggga
ataagttcgaattatagagtgatTCGAATGATAAAAGTTCAAATAAGCGA
GAATTCTCTGTACCTCTTGATACTAGGTTAGAGCTTACCATGAAGTATCC
CAGCTAGC
Run BLAST on NCBI

transcript from alignment at scaffold_478:289489..291287+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068001 ID=TCONS_00068001|Name=TCONS_00068001|organism=Clytia hemisphaerica|type=transcript|length=1799bp|location=Sequence derived from alignment at scaffold_478:289489..291287+ (Clytia hemisphaerica)
CAACATCAATGTTTTAGTAGGACTTTAGcatcaacattttcattatAGTT
TGTGCGCAACGGATTTTCAAACAACAATATAAAACATGAATCACGAACAC
TCTTTCAATTTCGATTCTCTCTAATCAACATCAATGTTTTAGTAGGACTT
TAGCCTCAACGTTTTCATTATAGTTTGTGTGCAACGGATTttcaaacaac
aaaataaaacacgAAGCGCGAACACTCTTTCAATTTCGATTCTCTCTAAT
CAACATCAATGTTTTAGTAGGACTTTAGCATCAACGTTTTCATTATAGTT
TGTGTGCAACGGATTTTCAAACAACAATATAAAACATNtctcaatttttg
ttttgctgtACCTTCGAGCGAACGGGTTGAAAACCCTCACGTCAAAAAAT
GCTCTTTGGCCAGCAGTCCAAAAACtgagaacaaaaacattgcgtgcgaa
aacgaaagtataacaGACAGACaaacaaaacgacatacagaataccgcta
ttaatatatagatattaAATATGATTATAATTAATTCCCAGGAAATTACT
ACGCGTAGAAagccaaaaaacaacaaagtcaaATGACATTATGTAAAACT
ATAGTTGTTTTACGACATTTACAACGATATGTTGCCAAAACAAACCAAGT
ATCTTTACAAATATTAGCACCACGAGTGGTGTTCTGTACATTCCTATGTG
AAGAAAATTGATATCAACAAAATATTGATCCTTTTAGTAAAATGttacat
aaaaaatataaagtcaagataaaaaaagtgcaaagaaaaaaaactgttta
aatCGATATCGATTCTCTCTgataaaattcaatattttagtAGGGTTTAT
AACCCAAGTGTCCTATTCCGGTTAGTACGCAACGGTGTCAGGATTCAAAA
CTGATTttcaaacaacaaaataaaacatgaaGCACGAACACTCTTTCAAT
TTCGATTCTCTCTAGTCAACATCAATGTTTTAGTAGGACTTTAGcatcaa
cattttcattatAGTTTGTGTGCAACGGATTTTCAAACAACAAAATGAAA
CACGAATCACGAACACTCTTTCAATTTCGATTCTCTCTAGTCAACATCAA
TGTTTTAGTAGGACTTTAGcatcaacattttcattatAGTTTGTGCGCAA
CGGATTTTCAAACAACAATATAAAACATGAATCACGAACACTCTTTCAAT
TTCGATTCTCTCTAATCAACATCAATGTTTTAGTAGGACTTTAGCATCAA
CGTTTTCATTATAGTTTGTGTGCAACGGATTTTCAAACAACAATATAAAA
CATGAACCACGAACACtctttcaatttcgattttCTCTAATCAACATCAA
TGTTTTAGTAATAGTAGAGCTTTTACTCCAACTATTCCATTGCGCTTTGT
TGTTGTCTGTGTGATCATTATTAAAAGAGATCTGTGCACATTTCTTAAAC
CACCAACCACCTTCTTTTAATTGAGCACATTTTCCGGAATATAAATCGTT
ATCGCGATCAGGAGTCGAGAATTCCATACCATCATGGACTAACCAATCGG
CTAAAACAAAAAGAAGTCAAAATACAGTTGActgtctctaattcgaactg
aaacggggaaatttattttattcaaattaaagAGAGATACGAATTGTAGA
AAGTAGATTTTAAGTAGATTTTTCTTTGACGGGGATAgggaataagttcg
aattatagagtgatTCGAATGATAAAAGTTCAAATAAGCGAGAATTCTCT
GTACCTCTTGATACTAGGTTAGAGCTTACCATGAAGTATCCCAGCTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042462XLOC_042462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068001-exon-scaffold_478-1491911889:289489..289573TCONS_00068001-exon-scaffold_478-1491911889:289489..289573Clytia hemisphaericaexon
TCONS_00068001-exon-scaffold_478-1510915933:289489..289573TCONS_00068001-exon-scaffold_478-1510915933:289489..289573Clytia hemisphaericaexon
TCONS_00068001-exon-scaffold_478-1575043694:289489..289573TCONS_00068001-exon-scaffold_478-1575043694:289489..289573Clytia hemisphaericaexon
TCONS_00068001-exon-scaffold_478-1491911889:290540..290664TCONS_00068001-exon-scaffold_478-1491911889:290540..290664Clytia hemisphaericaexon
TCONS_00068001-exon-scaffold_478-1510915933:290540..290664TCONS_00068001-exon-scaffold_478-1510915933:290540..290664Clytia hemisphaericaexon
TCONS_00068001-exon-scaffold_478-1575043694:290540..290664TCONS_00068001-exon-scaffold_478-1575043694:290540..290664Clytia hemisphaericaexon
TCONS_00068001-exon-scaffold_478-1491911889:290790..291287TCONS_00068001-exon-scaffold_478-1491911889:290790..291287Clytia hemisphaericaexon
TCONS_00068001-exon-scaffold_478-1510915933:290790..291287TCONS_00068001-exon-scaffold_478-1510915933:290790..291287Clytia hemisphaericaexon
TCONS_00068001-exon-scaffold_478-1575043694:290790..291287TCONS_00068001-exon-scaffold_478-1575043694:290790..291287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:289489..291287 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0685493	0.142814	0	0	0	0	2.694	1.02448	0.370406	0.383853	0	0.199118	1.4146	4.57065	0.797291	0	0.226657	0.587771	0.322978	2.37381	7.77596	7.9441	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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