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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067994 ID=TCONS_00067994|Name=TCONS_00067994|organism=Clytia hemisphaerica|type=transcript|length=1317bp
TATCTAGAATGATAACAAAAGATAAAATACTACAACATCTTTACGTCAAG
TCACAGGCTATCAAAGACGAAACCTTTTACAGAAATCTTCaaacattatt
attataaaaGACACtcacaaaatttataaaaataagatGTCTACGCCAAG
TCAAAAGTTATCGAAGATGAAAACGACCTACAAAGACCTTCAAAGATTTT
ATAAATTGGACCAAGAATACATCAAAACACTTTCAGACTGTTTAAGACTG
GTTATGCCGATACCCATGAAGTTACAAAACAGAGTGCATGAAATCAATCC
CGAACAAGGTTACGTCAAGATTGAACTTGTTCGTGATATTTTACATGAGT
TCAAAACCAGTGGCTGGAACTTTGACGAAGAGTTTATTGACAGATGTGTT
GAGACTTTCAAATCACCGGATGGGTATTTTCAACCTTTTCAGattAAATC
GTTGGTCAAAGGCGAAGCAGAATATGGAGACAGGGGTGGTTTATTGCTGT
TAGCTGCTTCAGTTTTTGGAGTCAATGTCAGTGATGTCGAGATCAAACAA
GCTGGGGATGAGgtAACCAAGTCATCAGTCAAATCGGCTTATTTTGTTAA
GTCGCACGGTCGTAACATGCTGAAAGTGTCTTTAGACCTTGTTGTATTGC
TCAAGTTAAGTTGGCGCCCCGATATCGTAAAATCTTGGTTTGAAAGATCG
AAAAATTGGCCTAATGATTTTGAATGTGAAAAGCTGTTAAGCTCGGGTAT
CCGTGTTATACCTAAGCCATCAAGGAGAAATAAACACGATGAGAACTCTA
CTGAAATGCGTTATGCTTTTTCACATATTGAAAGGAAATTGGTCAAAATG
CGAAGCCCAGAACAGAACTTTGTGTACatggtttttaaaattatgtttGT
GAAATGGGTCAAACCAATTGATAAAGAAGAAATCAGTTCTTTCATTGCCA
AGACTGCAATGTTTTGGATTGCTGAGGAATTTCCACCTGGAGATTCTGTT
TgggatgtttttgatgataaatCCTTACTGTTACCattgcaaattttatt
ttcatggcTTTTAAGTGCTTTTGAGTGTGGTTTCGTTCGTTATTACTTTA
ATGAGAAAGTTAACATCATTGAAGGCATGTCTGACACGATTAgggatcaa
atcaaaacaaaacttgagGGAATCGTTGGTAATATTGGAGATTTCATTCC
ATCCAATATTGAAAAGGAGCTCAGAGCTGCGGAAACCTTGTTGGGTTATC
TTTCGTCTATTAAAGATACTTTATTGAAAATCAATTCGAAAGATTATTCA
GCTCTCGTTAGCCAGCA Run BLAST on NCBI transcript from alignment at scaffold_478:248982..254181+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067994 ID=TCONS_00067994|Name=TCONS_00067994|organism=Clytia hemisphaerica|type=transcript|length=5200bp|location=Sequence derived from alignment at scaffold_478:248982..254181+ (Clytia hemisphaerica)
TATCTAGAATGATAACAAAAGATAAAATACTACAACATCTTTACGTCAAG
TCACAGGCTATCAAAGACGAAACCTTTTACAGAAATCTTCaaacattatt
attataaaaGACACtcacaaaatttataaaaataagatGTCTACGCCAAG
TCAAAAGTTATCGAAGATGAAAACGACCTACAAAGACCTTCAAAGATTTT
ATAAATTGGACCAAGAATACATCAAAACACTTTCAGACTGTTTAAGACTG
GTTATGCCGGTatctaaaatttataaaattcatCCTAACCCTatggaaaa
tatttctttagcTGGAAGTTCGGTCGAAGGTGCTGCTCTTACGCGATTAT
TTGAAGCGAGTAAAGATTTTGAAGATGGGGTCAATCAAGAAATCGAACTT
GATGTAGAAATGATAATATGTCaggtatttttctttgctttgcatagttt
ctagaggggtcaagacccccacccttaggtaagaggaccccccccctccc
ttaagtgctaacccccccttaagaaattcatttaaaatttcacgattgta
caagagtcataatttcgcataattcaaggaagatccccccttatctaaga
agaccccccttaggtaagaagaccccccttaactggcaacccccccttag
gaaagtcatacttttaacacccccttgcttttggttcatcaaaacccaag
accccccccctaaatgtagtggggggtagaaactatgcTTTGTCAGGTTT
TTTATGTAAACAACAGAATCAGgagcaaaaaagttaattttttccatttc
ctGTTGACGTATAGGATGGAAAGTAATGCAAAATCTATTTGAGAATCTTT
TTGATCAAAAATTGCGATGATAAAACTGATAAAAAACTTCACACTTTCTT
TTGACGTTAGAAAAAGCGTCCGTTACGCGCAAAGCCGTTGCAGTTTTCTG
TACTGTGTGTCCAAAAAgaacagatgagatggagtttttataagatactt
taataattggtcatttgaagtaataaaaatgatgcgttctttagaaaaaa
ggatgaaaattttttattactGGTGAACGactaaccaaatcaaataaaaa
cttgtaaaaactccatctcgtcccaaaaAGAAACGAAACAAAACACCCTA
ATTAGTTAAGCacgttttttataggaacatccaacatttttgaagtcttt
atATGTGATTTAGATTTTAGATGGGCGGAGGGGttagaaaaatctcaaaa
cttaataagcttttgaataaaaatgtcctgggtggaaaatttttgaaaaa
ttaattagcgggggggggggggggggttttcaaaatcaaaaaaaaatttt
tcaaaaaaaatgtccgggggggaaaattttttaaaaattaaaaagggggg
gggggggggcggctattagatACCAGAAAgtacttttcaagaaaaatctt
ttgaattcTACTTGTTTTTCTAGATACCCATGAAGTTACAAAACAGAGTG
CATGAAATCAATCCCGAACAAGGTTACGTCAAGATTGAACTTGTTCGTGA
TATTTTACATGAGTTCAAAACCAGTGGCTGGAACTTTGACGAAGAGTTTA
TTGACAGATGTGTTGAGACTTTCAAATCACCGGATGGGTATTTTCAACCT
TTTCAGGTTTGTGTATCAGAGTAAATGAAAGTGGAAAGTGTAAAGCAATA
AAATAACGTTTTTCGACTCCCTTCAAGGTTTCTTTGTATACTTAaatggg
attaatttttgcggtgaCTTTAATTTCACGGATGATTCTatttaagaaaa
gaaaaaagaaaaaacaacttttttttggcACCGTGCgaactcaaattttg
aaaaattctatttattttgctttgtcagcatagagaCGTGCATCCTTGTA
AAAATGTACATATATCTTTAAACTTTTCTAGGAACAATCACTGACCTTTA
CATATCCCTGGACCTTACTCaatgccggccaagcaaaatattttgattgg
agtttttttttaaattggtacccgcaaagagAGCGCTGTTGAATAGTAAA
TAATTGACTCACCAGATATCAGCGTCTTCTCCAAGAGATAGATCGAAGAT
CATACAAGCCACTGGAATGCGTGCTGCAATAACGCCAATCAAAAGATATG
AAAACAGGAAGCCAGCAAATACCAACAGAaacgatcaaagatggcggata
tagcttggtccagggatatataaaggtcagtgggaaCAATGACTAAAttg
aaatcttttcaaaatcttttgaaagattAAATCGTTGGTCAAAGGCGAAG
CAGAATATGGAGACAGGGGTGGTTTATTGCTGTTAGCTGCTTCAGTTTTT
GGAGTCAATGTCAGTGATGTCGAGATCAAACAAGCTGGGGATGAGGTAAA
TTACAGTGTAAATTACATAGAATTATCCCGaaatatattgtactctttgt
tgtctttgttggacctaccccggtggaggtcctataaattaacctgtgtt
tgttcgtccgtccgtccgtccgtccgtccgtccgttcgttcgttcgttcg
ttcgttcgtctgttaccaacttttctcaggattgaatcataggaatcttt
tgatttttggtacaaaggtgcaaaatagtggtgggcaaaatgtgacggag
cccgattttcgaaaaaaaaattttttgggcggatttgggccaaaaaacgg
ctaaaaaacggtttttttggactttgtgaaaaattggatcattaattttt
tctgattttttgcattaaagtagggtaccatcataggtaaaagatgactc
AAGCAAATTgttgtaaaaaaattttgttggcttaaaaaacgcatgtttat
ctataagaatcactattaataagcatacatcaatgttcttagtcaaatta
ctcaatatttttacaagatagatgtttttttttgctcatgagggcttagt
tttgaagaatatgtgtgtttagacaggaaattttggttgctcggcgtgtt
cttatagaaaaactggccaaattcgatattttttataagcacattatcaa
ttacttaggtattagttttttctcgagattggctctttcattctttatga
ttttttgcacaaagattcataactataaaccctcgaatgtaacggagccc
aattttcgaaaaaaaatgtttttgggcaaatttggaccaaaaaacggcta
aaaaaaggattttttggactttgtgaaaaattggatcattagtaattttt
tctgattttttgcatgaaagtagggtaccatcataggtaaaagatggctc
aagcagatttttgcaaaaaaatcttGTTGGTTCAAAAAACGcttgtttat
ctataagaatcactattaataagcatacatcaatgttcttagtcaaatta
ctgagatagatgtttgtttttgctcacgaagtcttgaatatgaaagaata
tttcaagagcatgaaatttttgtttctaaacgtcttttttataagaaaca
aacgactaattttaatagatcgtcactatttgtgttctgaatgattgttt
aatggtcacgtcacatagatatcaattataaatgtgttaaatgcataacc
aggtaggtccataaaggtatcacttgtttaaaatcaatttgattCATAGT
GTGTAGAGGGAATGAGTCTCAACCCCCACTTTCATTCGATTCTGCCTATG
TATATACATCCCCCTATAAATACTACATCGTcactatttttgaaatatca
agAGCTATGATTGAAtccgaaaatgaaaaatggggcttttccagaaaaaa
tttgaatatggggggtggaggatataacaattttcagtgatttacctccc
ggacaaagtgacttttggcccccggacaacgggttttaccccccggacaa
gcatcagttgaccctcCGGataacccaaattacccccggacagagcaaat
ttaccccccggacaaggcaaattttgatgatttttcactaccccccagac
aatatatcctccacctccatgtacggacattttctggaagagcccatggC
ATCAAACCCCAATTTATTAAAACTGATCACATAAGAGATCTCCTGATTCG
GCTGACACCATAGACTTATAAAGCCCGATAGGCTAGATGTCAAGCTTTTG
CTggaaagtgtgccgtggttaggtaggaaatcctacctaagtcacgtgac
attaaaatagaatttcagcgcttgaccaatcagaagcttcgcggattttc
gaaaacaataacaacaataattttttccgatattcaattttttttgcctg
caNcgcggattttcgaaaacaatagcaacaatattttttccgatattaaA
TTTTGCCTGCAATGGCTTAAAgcccgacatctagcccttcgggcttataa
atCTATGGCTGAGACATTTGAGGAAACtatggttttatttttaaggtAAC
CAAGTCATCAGTCAAATCGGCTTATTTTGTTAAGTCGCACGGTCGTAACA
TGCTGAAAGTGTCTTTAGACCTTGTTGTATTGCTCAAGTTAAGTTGGCGC
CCCGATATCGTAAAATCTTGGTTTGAAAGATCGAAAAATTGGCCTAATGA
TTTTGAATGTGAAAAGCTGTTAAGCTCGGGTATCCGTGTTATACCTAAGC
CATCAAGGAGAAATAAACACGATGAGAACTCTACTGAAATGCGTTATGCT
TTTTCACATATTGAAAGGAAATTGGTCAAAATGCGAAGCCCAGAACAGAA
CTTTGTGTACatggtttttaaaattatgtttGTGAAATGGGTCAAACCAA
TTGATAAAGAAGAAATCAGTTCTTTCATTGCCAAGACTGCAATGTTTTGG
ATTGCTGAGGAATTTCCACCTGGAGATTCTGTTTgggatgtttttgatga
taaatCCTTACTGTTACCattgcaaattttattttcatggcTTTTAAGTG
CTTTTGAGTGTGGTTTCGTTCGTTATTACTTTAATGAGAAAGTTAACATC
ATTGAAGGCATGTCTGACACGATTAgggatcaaatcaaaacaaaacttga
gGGAATCGTTGGTAATATTGGAGATTTCATTCCATCCAATATTGAAAAGG
AGCTCAGAGCTGCGGAAACCTTGTTGGGTTATCTTTCGTCTATTAAAGAT
ACTTTATTGAAAATCAATTCGAAAGATTATTCAGCTCTCGTTAGCCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067994-exon-scaffold_478-1491911889:248982..249240 | TCONS_00067994-exon-scaffold_478-1491911889:248982..249240 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1510915933:248982..249240 | TCONS_00067994-exon-scaffold_478-1510915933:248982..249240 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1575043694:248982..249240 | TCONS_00067994-exon-scaffold_478-1575043694:248982..249240 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1491911889:250455..250637 | TCONS_00067994-exon-scaffold_478-1491911889:250455..250637 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1510915933:250455..250637 | TCONS_00067994-exon-scaffold_478-1510915933:250455..250637 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1575043694:250455..250637 | TCONS_00067994-exon-scaffold_478-1575043694:250455..250637 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1491911889:251257..251376 | TCONS_00067994-exon-scaffold_478-1491911889:251257..251376 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1510915933:251257..251376 | TCONS_00067994-exon-scaffold_478-1510915933:251257..251376 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1575043694:251257..251376 | TCONS_00067994-exon-scaffold_478-1575043694:251257..251376 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1491911889:253427..254181 | TCONS_00067994-exon-scaffold_478-1491911889:253427..254181 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1510915933:253427..254181 | TCONS_00067994-exon-scaffold_478-1510915933:253427..254181 | Clytia hemisphaerica | exon |
| TCONS_00067994-exon-scaffold_478-1575043694:253427..254181 | TCONS_00067994-exon-scaffold_478-1575043694:253427..254181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:248982..254181 + |
Blast
The following BLAST results are available for this feature:
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