|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067993 ID=TCONS_00067993|Name=TCONS_00067993|organism=Clytia hemisphaerica|type=transcript|length=1492bp
TAATCTTTCATATCTAGAATGATAACAAAAGATAAAATACTACAACATCT
TTACGTCAAGTCACAGGCTATCAAAGACGAAACCTTTTACAGAAATCTTC
aaacattattattataaaaGACACtcacaaaatttataaaaataagatGT
CTACGCCAAGTCAAAAGTTATCGAAGATGAAAACGACCTACAAAGACCTT
CAAAGATTTTATAAATTGGACCAAGAATACATCAAAACACTTTCAGACTG
TTTAAGACTGGTTATGCCGGTatctaaaatttataaaattcatCCTAACC
CTatggaaaatatttctttagcTGGAAGTTCGGTCGAAGGTGCTGCTCTT
ACGCGATTATTTGAAGCGAGTAAAGATTTTGAAGATGGGGTCAATCAAGA
AATCGAACTTGATGTAGAAATGATAATATGTCagATACCCATGAAGTTAC
AAAACAGAGTGCATGAAATCAATCCCGAACAAGGTTACGTCAAGATTGAA
CTTGTTCGTGATATTTTACATGAGTTCAAAACCAGTGGCTGGAACTTTGA
CGAAGAGTTTATTGACAGATGTGTTGAGACTTTCAAATCACCGGATGGGT
ATTTTCAACCTTTTCAGattAAATCGTTGGTCAAAGGCGAAGCAGAATAT
GGAGACAGGGGTGGTTTATTGCTGTTAGCTGCTTCAGTTTTTGGAGTCAA
TGTCAGTGATGTCGAGATCAAACAAGCTGGGGATGAGgtAACCAAGTCAT
CAGTCAAATCGGCTTATTTTGTTAAGTCGCACGGTCGTAACATGCTGAAA
GTGTCTTTAGACCTTGTTGTATTGCTCAAGTTAAGTTGGCGCCCCGATAT
CGTAAAATCTTGGTTTGAAAGATCGAAAAATTGGCCTAATGATTTTGAAT
GTGAAAAGCTGTTAAGCTCGGGTATCCGTGTTATACCTAAGCCATCAAGG
AGAAATAAACACGATGAGAACTCTACTGAAATGCGTTATGCTTTTTCACA
TATTGAAAGGAAATTGGTCAAAATGCGAAGCCCAGAACAGAACTTTGTGT
ACatggtttttaaaattatgtttGTGAAATGGGTCAAACCAATTGATAAA
GAAGAAATCAGTTCTTTCATTGCCAAGACTGCAATGTTTTGGATTGCTGA
GGAATTTCCACCTGGAGATTCTGTTTgggatgtttttgatgataaatCCT
TACTGTTACCattgcaaattttattttcatggcTTTTAAGTGCTTTTGAG
TGTGGTTTCGTTCGTTATTACTTTAATGAGAAAGTTAACATCATTGAAGG
CATGTCTGACACGATTAgggatcaaatcaaaacaaaacttgagGGAATCG
TTGGTAATATTGGAGATTTCATTCCATCCAATATTGAAAAGGAGCTCAGA
GCTGCGGAAACCTTGTTGGGTTATCTTTCGTCTATTAAAGATACTTTATT
GAAAATCAATTCGAAAGATTATTCAGCTCTCGTTAGCCAGCA Run BLAST on NCBI transcript from alignment at scaffold_478:248972..254181+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067993 ID=TCONS_00067993|Name=TCONS_00067993|organism=Clytia hemisphaerica|type=transcript|length=5210bp|location=Sequence derived from alignment at scaffold_478:248972..254181+ (Clytia hemisphaerica)
TAATCTTTCATATCTAGAATGATAACAAAAGATAAAATACTACAACATCT
TTACGTCAAGTCACAGGCTATCAAAGACGAAACCTTTTACAGAAATCTTC
aaacattattattataaaaGACACtcacaaaatttataaaaataagatGT
CTACGCCAAGTCAAAAGTTATCGAAGATGAAAACGACCTACAAAGACCTT
CAAAGATTTTATAAATTGGACCAAGAATACATCAAAACACTTTCAGACTG
TTTAAGACTGGTTATGCCGGTatctaaaatttataaaattcatCCTAACC
CTatggaaaatatttctttagcTGGAAGTTCGGTCGAAGGTGCTGCTCTT
ACGCGATTATTTGAAGCGAGTAAAGATTTTGAAGATGGGGTCAATCAAGA
AATCGAACTTGATGTAGAAATGATAATATGTCaggtatttttctttgctt
tgcatagtttctagaggggtcaagacccccacccttaggtaagaggaccc
cccccctcccttaagtgctaacccccccttaagaaattcatttaaaattt
cacgattgtacaagagtcataatttcgcataattcaaggaagatcccccc
ttatctaagaagaccccccttaggtaagaagaccccccttaactggcaac
ccccccttaggaaagtcatacttttaacacccccttgcttttggttcatc
aaaacccaagaccccccccctaaatgtagtggggggtagaaactatgcTT
TGTCAGGTTTTTTATGTAAACAACAGAATCAGgagcaaaaaagttaattt
tttccatttcctGTTGACGTATAGGATGGAAAGTAATGCAAAATCTATTT
GAGAATCTTTTTGATCAAAAATTGCGATGATAAAACTGATAAAAAACTTC
ACACTTTCTTTTGACGTTAGAAAAAGCGTCCGTTACGCGCAAAGCCGTTG
CAGTTTTCTGTACTGTGTGTCCAAAAAgaacagatgagatggagttttta
taagatactttaataattggtcatttgaagtaataaaaatgatgcgttct
ttagaaaaaaggatgaaaattttttattactGGTGAACGactaaccaaat
caaataaaaacttgtaaaaactccatctcgtcccaaaaAGAAACGAAACA
AAACACCCTAATTAGTTAAGCacgttttttataggaacatccaacatttt
tgaagtctttatATGTGATTTAGATTTTAGATGGGCGGAGGGGttagaaa
aatctcaaaacttaataagcttttgaataaaaatgtcctgggtggaaaat
ttttgaaaaattaattagcgggggggggggggggggttttcaaaatcaaa
aaaaaatttttcaaaaaaaatgtccgggggggaaaattttttaaaaatta
aaaagggggggggggggggcggctattagatACCAGAAAgtacttttcaa
gaaaaatcttttgaattcTACTTGTTTTTCTAGATACCCATGAAGTTACA
AAACAGAGTGCATGAAATCAATCCCGAACAAGGTTACGTCAAGATTGAAC
TTGTTCGTGATATTTTACATGAGTTCAAAACCAGTGGCTGGAACTTTGAC
GAAGAGTTTATTGACAGATGTGTTGAGACTTTCAAATCACCGGATGGGTA
TTTTCAACCTTTTCAGGTTTGTGTATCAGAGTAAATGAAAGTGGAAAGTG
TAAAGCAATAAAATAACGTTTTTCGACTCCCTTCAAGGTTTCTTTGTATA
CTTAaatgggattaatttttgcggtgaCTTTAATTTCACGGATGATTCTa
tttaagaaaagaaaaaagaaaaaacaacttttttttggcACCGTGCgaac
tcaaattttgaaaaattctatttattttgctttgtcagcatagagaCGTG
CATCCTTGTAAAAATGTACATATATCTTTAAACTTTTCTAGGAACAATCA
CTGACCTTTACATATCCCTGGACCTTACTCaatgccggccaagcaaaata
ttttgattggagtttttttttaaattggtacccgcaaagagAGCGCTGTT
GAATAGTAAATAATTGACTCACCAGATATCAGCGTCTTCTCCAAGAGATA
GATCGAAGATCATACAAGCCACTGGAATGCGTGCTGCAATAACGCCAATC
AAAAGATATGAAAACAGGAAGCCAGCAAATACCAACAGAaacgatcaaag
atggcggatatagcttggtccagggatatataaaggtcagtgggaaCAAT
GACTAAAttgaaatcttttcaaaatcttttgaaagattAAATCGTTGGTC
AAAGGCGAAGCAGAATATGGAGACAGGGGTGGTTTATTGCTGTTAGCTGC
TTCAGTTTTTGGAGTCAATGTCAGTGATGTCGAGATCAAACAAGCTGGGG
ATGAGGTAAATTACAGTGTAAATTACATAGAATTATCCCGaaatatattg
tactctttgttgtctttgttggacctaccccggtggaggtcctataaatt
aacctgtgtttgttcgtccgtccgtccgtccgtccgtccgtccgttcgtt
cgttcgttcgttcgttcgtctgttaccaacttttctcaggattgaatcat
aggaatcttttgatttttggtacaaaggtgcaaaatagtggtgggcaaaa
tgtgacggagcccgattttcgaaaaaaaaattttttgggcggatttgggc
caaaaaacggctaaaaaacggtttttttggactttgtgaaaaattggatc
attaattttttctgattttttgcattaaagtagggtaccatcataggtaa
aagatgactcAAGCAAATTgttgtaaaaaaattttgttggcttaaaaaac
gcatgtttatctataagaatcactattaataagcatacatcaatgttctt
agtcaaattactcaatatttttacaagatagatgtttttttttgctcatg
agggcttagttttgaagaatatgtgtgtttagacaggaaattttggttgc
tcggcgtgttcttatagaaaaactggccaaattcgatattttttataagc
acattatcaattacttaggtattagttttttctcgagattggctctttca
ttctttatgattttttgcacaaagattcataactataaaccctcgaatgt
aacggagcccaattttcgaaaaaaaatgtttttgggcaaatttggaccaa
aaaacggctaaaaaaaggattttttggactttgtgaaaaattggatcatt
agtaattttttctgattttttgcatgaaagtagggtaccatcataggtaa
aagatggctcaagcagatttttgcaaaaaaatcttGTTGGTTCAAAAAAC
Gcttgtttatctataagaatcactattaataagcatacatcaatgttctt
agtcaaattactgagatagatgtttgtttttgctcacgaagtcttgaata
tgaaagaatatttcaagagcatgaaatttttgtttctaaacgtctttttt
ataagaaacaaacgactaattttaatagatcgtcactatttgtgttctga
atgattgtttaatggtcacgtcacatagatatcaattataaatgtgttaa
atgcataaccaggtaggtccataaaggtatcacttgtttaaaatcaattt
gattCATAGTGTGTAGAGGGAATGAGTCTCAACCCCCACTTTCATTCGAT
TCTGCCTATGTATATACATCCCCCTATAAATACTACATCGTcactatttt
tgaaatatcaagAGCTATGATTGAAtccgaaaatgaaaaatggggctttt
ccagaaaaaatttgaatatggggggtggaggatataacaattttcagtga
tttacctcccggacaaagtgacttttggcccccggacaacgggttttacc
ccccggacaagcatcagttgaccctcCGGataacccaaattacccccgga
cagagcaaatttaccccccggacaaggcaaattttgatgatttttcacta
ccccccagacaatatatcctccacctccatgtacggacattttctggaag
agcccatggCATCAAACCCCAATTTATTAAAACTGATCACATAAGAGATC
TCCTGATTCGGCTGACACCATAGACTTATAAAGCCCGATAGGCTAGATGT
CAAGCTTTTGCTggaaagtgtgccgtggttaggtaggaaatcctacctaa
gtcacgtgacattaaaatagaatttcagcgcttgaccaatcagaagcttc
gcggattttcgaaaacaataacaacaataattttttccgatattcaattt
tttttgcctgcaNcgcggattttcgaaaacaatagcaacaatattttttc
cgatattaaATTTTGCCTGCAATGGCTTAAAgcccgacatctagcccttc
gggcttataaatCTATGGCTGAGACATTTGAGGAAACtatggttttattt
ttaaggtAACCAAGTCATCAGTCAAATCGGCTTATTTTGTTAAGTCGCAC
GGTCGTAACATGCTGAAAGTGTCTTTAGACCTTGTTGTATTGCTCAAGTT
AAGTTGGCGCCCCGATATCGTAAAATCTTGGTTTGAAAGATCGAAAAATT
GGCCTAATGATTTTGAATGTGAAAAGCTGTTAAGCTCGGGTATCCGTGTT
ATACCTAAGCCATCAAGGAGAAATAAACACGATGAGAACTCTACTGAAAT
GCGTTATGCTTTTTCACATATTGAAAGGAAATTGGTCAAAATGCGAAGCC
CAGAACAGAACTTTGTGTACatggtttttaaaattatgtttGTGAAATGG
GTCAAACCAATTGATAAAGAAGAAATCAGTTCTTTCATTGCCAAGACTGC
AATGTTTTGGATTGCTGAGGAATTTCCACCTGGAGATTCTGTTTgggatg
tttttgatgataaatCCTTACTGTTACCattgcaaattttattttcatgg
cTTTTAAGTGCTTTTGAGTGTGGTTTCGTTCGTTATTACTTTAATGAGAA
AGTTAACATCATTGAAGGCATGTCTGACACGATTAgggatcaaatcaaaa
caaaacttgagGGAATCGTTGGTAATATTGGAGATTTCATTCCATCCAAT
ATTGAAAAGGAGCTCAGAGCTGCGGAAACCTTGTTGGGTTATCTTTCGTC
TATTAAAGATACTTTATTGAAAATCAATTCGAAAGATTATTCAGCTCTCG
TTAGCCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067993-exon-scaffold_478-1491911889:248972..249405 | TCONS_00067993-exon-scaffold_478-1491911889:248972..249405 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1510915933:248972..249405 | TCONS_00067993-exon-scaffold_478-1510915933:248972..249405 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1575043694:248972..249405 | TCONS_00067993-exon-scaffold_478-1575043694:248972..249405 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1491911889:250455..250637 | TCONS_00067993-exon-scaffold_478-1491911889:250455..250637 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1510915933:250455..250637 | TCONS_00067993-exon-scaffold_478-1510915933:250455..250637 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1575043694:250455..250637 | TCONS_00067993-exon-scaffold_478-1575043694:250455..250637 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1491911889:251257..251376 | TCONS_00067993-exon-scaffold_478-1491911889:251257..251376 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1510915933:251257..251376 | TCONS_00067993-exon-scaffold_478-1510915933:251257..251376 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1575043694:251257..251376 | TCONS_00067993-exon-scaffold_478-1575043694:251257..251376 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1491911889:253427..254181 | TCONS_00067993-exon-scaffold_478-1491911889:253427..254181 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1510915933:253427..254181 | TCONS_00067993-exon-scaffold_478-1510915933:253427..254181 | Clytia hemisphaerica | exon |
| TCONS_00067993-exon-scaffold_478-1575043694:253427..254181 | TCONS_00067993-exon-scaffold_478-1575043694:253427..254181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:248972..254181 + |
Blast
The following BLAST results are available for this feature:
|
