|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067991 ID=TCONS_00067991|Name=TCONS_00067991|organism=Clytia hemisphaerica|type=transcript|length=2110bp AATAATTACTTATTTCCTCTGTTTTCCCTCTTTATCAAGACATTGAACAC TATTAGTTATTTGGACATCTTAAACTCAAGGACTATTTAATGGATGAAAA GACAAATAGTATTTTAATAAGGCTCAACAATCATAGATAATTGAGATAAG TAAATTTTCATAGCTTAGGGAATTCCCCACAATGTTGAAAAGGGAAGTTC CCTTAATGTTAAGTAAATAGTGAATATTCTACTGTTCGATGTTTATCACT CAGtttttgataacaaaaatcataataaaaGATTTCCTTATCAGactgtt tttctttgattttttgacattaaaggttttgtttttaaataagagtgata tcatttgcttactcatcaattctaattcacaagctttttcgcattggatt gacacgtatgtggagcaagatttgtcagaaagaggaaaagaaaaacattt tttgcttacatcatcacaatataacaatagcaagactgtctgatatgaaa tatgtgtctgaaatgaaacgaaaacacttatgtaaaaacaaaacctttga tATAAATAGCTGTATGATAAGTCCTTTAATTCAGATTAAAACTAAGAATG GCAGctgcaaattttgaaaaagaaacaacTTTTTCTACTTTTCAAGAGCT TTTTGAATTAGATGAACGTTTTCGAAAAGCATTACATGCtggccttcaaa aatttttatggAATGGAACTGCCACAAAGAATCATCCAAATGCAAAGAAG AATATTCAGCTTGCTGGCAGTGCTATAGAGGGTGCAACTTTGGCAAGagt ttttcaaaagaatgaTGAGTTTCCAAGTGGTTTGAATCAAGAAATTGAAG TGGATATCGAATATTGTCTCTTTCAGATACCAGAGGATAAGAAGCATTTG GTAAAAGAAATCGATTCTGAACAGGGCTTTGTTCAAATTGAGTTTACAAA AGATCTAATCAATGATAGCATATCAATTGGCTGGAATGTTGACAAAGaag attttgaagaatattATGGAGAATTAATTTCACTCGGTGGATTTTTAAAG CCATTTAGAGCGAAACAAATTGCTCAACAGAAAGTAGCATTTCAAGATGT CGACAACGAATACCCTTTGCTTTTTGGTGCAATGTTTGGTGTTCCGAAAT GTGATATTAAAGTTGAGAATCTCGCTTGCGAAGTCACCAAATCCTCTGTC GCGTCCGAAATCCTTGTTAAGGTAAAAGAGGAACCAAagctcaaaatttc ttttgatactgTCATTATTGTGAAATTGGCCTGGCAGTCTCAAATTGCCA AGGACTGGTTGAGGAGACCAAAAAACTGGCCATCATACGCTATTTGTGAG CAACTCATGAAATCTGGAAGTTATGTTATTCCCAAACCGTCAAAGAAAAA CAAGCTACATCTGGATACCACTGAAATGCGTTATGCTTTCTCTCAAACAG AGCGCGAACTTGTTAAATTACGCAGTcagaatcaaaattttgtttacatG GTTTTTAAAATCATGTTTGTGAAATGGATCAAGCCAATTGATACAGAAGA AATCAGTTCTTTCATTGCCAAGACTGCAATGTTTTGGATTGCTGAGGAAT TTCCACCTGGAGATTCTGTTTGGGATGTTTTTGATGAAGATTCCTTACTT TTACCattgcaaattttattttcatggtTGTTGAGTACCTTTGAGAGTGG TTTCGTTCCATATTATTTTAATGTGAAGATCAATATCATTGCTGGAGTAT CAGGAATGACCAAGGAGTTAGTTATCACCAAAATGGAGGAAATTTTGAAT GATATGAGACAGTTCTTACTATCAGACATGCATCAAGAACTTGAACTCTG CAAAGATGTTACGATCAAGGTAGACAATTTTGGTCAAATATTTACaatga taaaaaacaaagactacATAGGTCTTTTACAACATCTTCCACCCGAATTG TGTTTGGACGCCCTTAAACATTACAATGAACATCCTAGAAAATATGAAAG ATATACTGCTGCAACAGAAGaaaatgataaagaaaattttgatgaaaatg taaaTGTTGTTGTTGAAAATGAAAACTGCTCCCTAactcaagaaattgaa aatgaagtaa Run BLAST on NCBI protein sequence of TCONS_00067991-protein >TCONS_00067991-protein ID=TCONS_00067991-protein|Name=TCONS_00067991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp
MAAANFEKETTFSTFQELFELDERFRKALHAGLQKFLWNGTATKNHPNAK KNIQLAGSAIEGATLARVFQKNDEFPSGLNQEIEVDIEYCLFQIPEDKKH LVKEIDSEQGFVQIEFTKDLINDSISIGWNVDKEDFEEYYGELISLGGFL KPFRAKQIAQQKVAFQDVDNEYPLLFGAMFGVPKCDIKVENLACEVTKSS VASEILVKVKEEPKLKISFDTVIIVKLAWQSQIAKDWLRRPKNWPSYAIC EQLMKSGSYVIPKPSKKNKLHLDTTEMRYAFSQTERELVKLRSQNQNFVY MVFKIMFVKWIKPIDTEEISSFIAKTAMFWIAEEFPPGDSVWDVFDEDSL LLPLQILFSWLLSTFESGFVPYYFNVKINIIAGVSGMTKELVITKMEEIL NDMRQFLLSDMHQELELCKDVTIKVDNFGQIFTMIKNKDYIGLLQHLPPE LCLDALKHYNEHPRKYERYTAATEENDKENFDENVNVVVENENCSLTQEI ENEV Run BLAST on NCBI transcript from alignment at scaffold_478:243351..246623+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067991 ID=TCONS_00067991|Name=TCONS_00067991|organism=Clytia hemisphaerica|type=transcript|length=3273bp|location=Sequence derived from alignment at scaffold_478:243351..246623+ (Clytia hemisphaerica) AATAATTACTTATTTCCTCTGTTTTCCCTCTTTATCAAGACATTGAACAC
TATTAGTTATTTGGACATCTTAAACTCAAGGACTATTTAATGGATGAAAA
GACAAATAGTATTTTAATAAGGCTCAACAATCATAGATAATTGAGATAAG
TAAATTTTCATAGCTTAGGGAATTCCCCACAATGTTGAAAAGGGAAGTTC
CCTTAATGTTAAGTAAATAGTGAATATTCTACTGTTCGATGTTTATCACT
CAGtttttgataacaaaaatcataataaaaGATTTCCTTATCAGactgtt
tttctttgattttttgacattaaaggttttgtttttaaataagagtgata
tcatttgcttactcatcaattctaattcacaagctttttcgcattggatt
gacacgtatgtggagcaagatttgtcagaaagaggaaaagaaaaacattt
tttgcttacatcatcacaatataacaatagcaagactgtctgatatgaaa
tatgtgtctgaaatgaaacgaaaacacttatgtaaaaacaaaacctttga
tATAAATAGCTGTATGATAAGTCCTTTAATTCAGATTAAAACTAAGAATG
GCAGctgcaaattttgaaaaagaaacaacTTTTTCTACTTTTCAAGAGCT
TTTTGAATTAGATGAACGTTTTCGAAAAGCATTACATGCtggccttcaaa
aatttttatggAATGGAACTGCCACAAAGAATCATCCAAATGCAAAGAAG
AATATTCAGCTTGCTGGCAGTGCTATAGAGGGTGCAACTTTGGCAAGagt
ttttcaaaagaatgaTGAGTTTCCAAGTGGTTTGAATCAAGAAATTGAAG
TGGATATCGAATATTGTCTCTTTCAGGTATAAACTTgcatatttttaatt
attttaaaagCTCTTTAAATGTCTAATTTCACTACTTGCTTTCATTTATT
AATTCTTTCTATTTCAATCTTCCATCTTCCCTCctagcggtttgcgtgaa
tgcatgaatgGGCATTTTCTTCCATATATTATAAAAAGCAAACAAATTAC
CATAAATAACAttattttaaagtattttttagttctttatAAGGATTCAT
TCCAAGTGTtcacaatatattgaaaattataaaTACAACTAAATTACTAG
cactattttcaatattttaataaTATGAAGGGTAGATGTGGCACttagaa
tttttggaaaataattttataaataaacCTTTGAAAATTAGTTAACTAtg
tttattttgcaaatttttgtttAGATACCAGAGGATAAGAAGCATTTGGT
AAAAGAAATCGATTCTGAACAGGGCTTTGTTCAAATTGAGTTTACAAAAG
ATCTAATCAATGATAGCATATCAATTGGCTGGAATGTTGACAAAGaagat
tttgaagaatattATGGAGAATTAATTTCACTCGGTGGATTTTTAAAGCC
ATTTAGAGCGAAACAAATTGCTCAACAGAAAGTAGCATTTCAAGATGTCG
ACAACGAATACCCTTTGCTTTTTGGTGCAATGTTTGGTGTTCCGAAATGT
GATATTAAAGTTGAGAATCTCGCTTGCGAAGTCACCAAATCCTCTGTCGC
GTCCGAAATCCTTGTTAAGGTAAAAGAGGAACCAAagctcaaaatttctt
ttgatactgTCATTATTGTGAAATTGGCCTGGCAGTCTCAAATTGCCAAG
GACTGGTTGAGGAGACCAAAAAACTGGCCATCATACGCTATTTGTGAGCA
ACTCATGAAATCTGGAAGTTATGTTATTCCCAAACCGTCAAAGAAAAACA
AGCTACATCTGGATACCACTGAAATGCGTTATGCTTTCTCTCAAACAGAG
CGCGAACTTGTTAAATTACGCAGTcagaatcaaaattttgtttacatGGT
TTTTAAAATCATGTTTGTGAAATGGATCAAGCCAATTGATACAGAAGAAA
TCAGTTCTTTCATTGCCAAGACTGCAATGTTTTGGATTGCTGAGGAATTT
CCACCTGGAGATTCTGTTTGGGATGTTTTTGATGAAGATTCCTTACTTTT
ACCattgcaaattttattttcatggtTGTTGAGTACCTTTGAGAGTGGTT
TCGTTCCATATTATTTTAATGTGAAGATCAATATCATTGCTGGAGTATCA
GGAATGACCAAGGAGTTAGTTATCACCAAAATGGAGGAAATTTTGAATGA
TATGAGACAGTTCTTACTATCAGACATGCATCAAGAACTTGAACTCTGCA
AAGATGTTACGATCAAGGTAGACAATTTTGGTCAAATATTTACaatgata
aaaaacaaagactacATAAGTCTTTTACAACATCTTCCACCCGAATTGTG
TTTGGACGCCCTTAAacatttcaatgaaaatccTAGAAAATATGAAAGAT
ATACTGCTGCAACAGAAGAAAATGATAAAGAAagttttaatgaaaatgta
aaTGTTGTTGTTGAAAATGAAAACTGCTCCACAACTCAAGAAATTGAATA
TGaagtaaaagaatttttcaagaaatttcatcAATAAAACTTTACTTTGG
ACGTTTGTTATCATTTGAGCATCGAACAACAATCCCTTACAGGGTGGTGG
TGTATTTTTGCTCTTGAAGCCGTAAAAATAAATGTCAAAAACATTACACT
CTGAGTGTGTGTGCAGACTTCACGCTtgtagtggggtcgtttagcataat
ttacgggaaaacaataagatctagctgaaactttctccagaccttctcta
taggatggttatgcctcaggaaaaattcccctaaaatcccactggtggaa
catcccttttttgggaaatttctttttttcccaggcaaaaccctaagggc
gaaatttttagaaaatttcaaactcattttcagacattatcaagtatacc
attcgaaagctctcgaaaaactatatagacgacttttaaacgggtatagc
cgatttcattacctaactcaagataattcacgcagaagatgctatttatg
gtcaattttgaccaaagtgtggcGAANTCAAGGTAGACAATTTTGGTCAA
ATATTTACaatgataaaaaacaaagactacATAGGTCTTTTACAACATCT
TCCACCCGAATTGTGTTTGGACGCCCTTAAACATTACAATGAACATCCTA
GAAAATATGAAAGATATACTGCTGCAACAGAAGaaaatgataaagaaaat
tttgatgaaaatgtaaaTGTTGTTGTTGAAAATGAAAACTGCTCCCTAac
tcaagaaattgaaaatgaagtaa Coding sequence (CDS) from alignment at scaffold_478:243351..246623+ >TCONS_00067991 ID=TCONS_00067991|Name=TCONS_00067991|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at scaffold_478:243351..246623+ (Clytia hemisphaerica) ATGGCAGctgcaaattttgaaaaagaaacaacTTTTTCTACTTTTCAAGA GCTTTTTGAATTAGATGAACGTTTTCGAAAAGCATTACATGCtggccttc aaaaatttttatggAATGGAACTGCCACAAAGAATCATCCAAATGCAAAG AAGAATATTCAGCTTGCTGGCAGTGCTATAGAGGGTGCAACTTTGGCAAG agtttttcaaaagaatgaTGAGTTTCCAAGTGGTTTGAATCAAGAAATTG AAGTGGATATCGAATATTGTCTCTTTCAGATACCAGAGGATAAGAAGCAT TTGGTAAAAGAAATCGATTCTGAACAGGGCTTTGTTCAAATTGAGTTTAC AAAAGATCTAATCAATGATAGCATATCAATTGGCTGGAATGTTGACAAAG aagattttgaagaatattATGGAGAATTAATTTCACTCGGTGGATTTTTA AAGCCATTTAGAGCGAAACAAATTGCTCAACAGAAAGTAGCATTTCAAGA TGTCGACAACGAATACCCTTTGCTTTTTGGTGCAATGTTTGGTGTTCCGA AATGTGATATTAAAGTTGAGAATCTCGCTTGCGAAGTCACCAAATCCTCT GTCGCGTCCGAAATCCTTGTTAAGGTAAAAGAGGAACCAAagctcaaaat ttcttttgatactgTCATTATTGTGAAATTGGCCTGGCAGTCTCAAATTG CCAAGGACTGGTTGAGGAGACCAAAAAACTGGCCATCATACGCTATTTGT GAGCAACTCATGAAATCTGGAAGTTATGTTATTCCCAAACCGTCAAAGAA AAACAAGCTACATCTGGATACCACTGAAATGCGTTATGCTTTCTCTCAAA CAGAGCGCGAACTTGTTAAATTACGCAGTcagaatcaaaattttgtttac atGGTTTTTAAAATCATGTTTGTGAAATGGATCAAGCCAATTGATACAGA AGAAATCAGTTCTTTCATTGCCAAGACTGCAATGTTTTGGATTGCTGAGG AATTTCCACCTGGAGATTCTGTTTGGGATGTTTTTGATGAAGATTCCTTA CTTTTACCattgcaaattttattttcatggtTGTTGAGTACCTTTGAGAG TGGTTTCGTTCCATATTATTTTAATGTGAAGATCAATATCATTGCTGGAG TATCAGGAATGACCAAGGAGTTAGTTATCACCAAAATGGAGGAAATTTTG AATGATATGAGACAGTTCTTACTATCAGACATGCATCAAGAACTTGAACT CTGCAAAGATGTTACGATCAAGGTAGACAATTTTGGTCAAATATTTACaa tgataaaaaacaaagactacATAGGTCTTTTACAACATCTTCCACCCGAA TTGTGTTTGGACGCCCTTAAACATTACAATGAACATCCTAGAAAATATGA AAGATATACTGCTGCAACAGAAGaaaatgataaagaaaattttgatgaaa atgtaaaTGTTGTTGTTGAAAATGAAAACTGCTCCCTAactcaagaaatt gaaaatgaagtaATGGCAGctgcaaattttgaaaaagaaacaacTTTTTC TACTTTTCAAGAGCTTTTTGAATTAGATGAACGTTTTCGAAAAGCATTAC ATGCtggccttcaaaaatttttatggAATGGAACTGCCACAAAGAATCAT CCAAATGCAAAGAAGAATATTCAGCTTGCTGGCAGTGCTATAGAGGGTGC AACTTTGGCAAGagtttttcaaaagaatgaTGAGTTTCCAAGTGGTTTGA ATCAAGAAATTGAAGTGGATATCGAATATTGTCTCTTTCAGATACCAGAG GATAAGAAGCATTTGGTAAAAGAAATCGATTCTGAACAGGGCTTTGTTCA AATTGAGTTTACAAAAGATCTAATCAATGATAGCATATCAATTGGCTGGA ATGTTGACAAAGaagattttgaagaatattATGGAGAATTAATTTCACTC GGTGGATTTTTAAAGCCATTTAGAGCGAAACAAATTGCTCAACAGAAAGT AGCATTTCAAGATGTCGACAACGAATACCCTTTGCTTTTTGGTGCAATGT TTGGTGTTCCGAAATGTGATATTAAAGTTGAGAATCTCGCTTGCGAAGTC ACCAAATCCTCTGTCGCGTCCGAAATCCTTGTTAAGGTAAAAGAGGAACC AAagctcaaaatttcttttgatactgTCATTATTGTGAAATTGGCCTGGC AGTCTCAAATTGCCAAGGACTGGTTGAGGAGACCAAAAAACTGGCCATCA TACGCTATTTGTGAGCAACTCATGAAATCTGGAAGTTATGTTATTCCCAA ACCGTCAAAGAAAAACAAGCTACATCTGGATACCACTGAAATGCGTTATG CTTTCTCTCAAACAGAGCGCGAACTTGTTAAATTACGCAGTcagaatcaa aattttgtttacatGGTTTTTAAAATCATGTTTGTGAAATGGATCAAGCC AATTGATACAGAAGAAATCAGTTCTTTCATTGCCAAGACTGCAATGTTTT GGATTGCTGAGGAATTTCCACCTGGAGATTCTGTTTGGGATGTTTTTGAT GAAGATTCCTTACTTTTACCattgcaaattttattttcatggtTGTTGAG TACCTTTGAGAGTGGTTTCGTTCCATATTATTTTAATGTGAAGATCAATA TCATTGCTGGAGTATCAGGAATGACCAAGGAGTTAGTTATCACCAAAATG GAGGAAATTTTGAATGATATGAGACAGTTCTTACTATCAGACATGCATCA AGAACTTGAACTCTGCAAAGATGTTACGATCAAGGTAGACAATTTTGGTC AAATATTTACaatgataaaaaacaaagactacATAGGTCTTTTACAACAT CTTCCACCCGAATTGTGTTTGGACGCCCTTAAACATTACAATGAACATCC TAGAAAATATGAAAGATATACTGCTGCAACAGAAGaaaatgataaagaaa attttgatgaaaatgtaaaTGTTGTTGTTGAAAATGAAAACTGCTCCCTA actcaagaaattgaaaatgaagtaATGGCAGctgcaaattttgaaaaaga aacaacTTTTTCTACTTTTCAAGAGCTTTTTGAATTAGATGAACGTTTTC GAAAAGCATTACATGCtggccttcaaaaatttttatggAATGGAACTGCC ACAAAGAATCATCCAAATGCAAAGAAGAATATTCAGCTTGCTGGCAGTGC TATAGAGGGTGCAACTTTGGCAAGagtttttcaaaagaatgaTGAGTTTC CAAGTGGTTTGAATCAAGAAATTGAAGTGGATATCGAATATTGTCTCTTT CAGATACCAGAGGATAAGAAGCATTTGGTAAAAGAAATCGATTCTGAACA GGGCTTTGTTCAAATTGAGTTTACAAAAGATCTAATCAATGATAGCATAT CAATTGGCTGGAATGTTGACAAAGaagattttgaagaatattATGGAGAA TTAATTTCACTCGGTGGATTTTTAAAGCCATTTAGAGCGAAACAAATTGC TCAACAGAAAGTAGCATTTCAAGATGTCGACAACGAATACCCTTTGCTTT TTGGTGCAATGTTTGGTGTTCCGAAATGTGATATTAAAGTTGAGAATCTC GCTTGCGAAGTCACCAAATCCTCTGTCGCGTCCGAAATCCTTGTTAAGGT AAAAGAGGAACCAAagctcaaaatttcttttgatactgTCATTATTGTGA AATTGGCCTGGCAGTCTCAAATTGCCAAGGACTGGTTGAGGAGACCAAAA AACTGGCCATCATACGCTATTTGTGAGCAACTCATGAAATCTGGAAGTTA TGTTATTCCCAAACCGTCAAAGAAAAACAAGCTACATCTGGATACCACTG AAATGCGTTATGCTTTCTCTCAAACAGAGCGCGAACTTGTTAAATTACGC AGTcagaatcaaaattttgtttacatGGTTTTTAAAATCATGTTTGTGAA ATGGATCAAGCCAATTGATACAGAAGAAATCAGTTCTTTCATTGCCAAGA CTGCAATGTTTTGGATTGCTGAGGAATTTCCACCTGGAGATTCTGTTTGG GATGTTTTTGATGAAGATTCCTTACTTTTACCattgcaaattttattttc atggtTGTTGAGTACCTTTGAGAGTGGTTTCGTTCCATATTATTTTAATG TGAAGATCAATATCATTGCTGGAGTATCAGGAATGACCAAGGAGTTAGTT ATCACCAAAATGGAGGAAATTTTGAATGATATGAGACAGTTCTTACTATC AGACATGCATCAAGAACTTGAACTCTGCAAAGATGTTACGATCAAGGTAG ACAATTTTGGTCAAATATTTACaatgataaaaaacaaagactacATAGGT CTTTTACAACATCTTCCACCCGAATTGTGTTTGGACGCCCTTAAACATTA CAATGAACATCCTAGAAAATATGAAAGATATACTGCTGCAACAGAAGaaa atgataaagaaaattttgatgaaaatgtaaaTGTTGTTGTTGAAAATGAA AACTGCTCCCTAactcaagaaattgaaaatgaagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067991-exon-scaffold_478-1491911889:243351..244226 | TCONS_00067991-exon-scaffold_478-1491911889:243351..244226 | Clytia hemisphaerica | exon |
TCONS_00067991-exon-scaffold_478-1510915933:243351..244226 | TCONS_00067991-exon-scaffold_478-1510915933:243351..244226 | Clytia hemisphaerica | exon |
TCONS_00067991-exon-scaffold_478-1575043694:243351..244226 | TCONS_00067991-exon-scaffold_478-1575043694:243351..244226 | Clytia hemisphaerica | exon |
TCONS_00067991-exon-scaffold_478-1491911889:244625..245617 | TCONS_00067991-exon-scaffold_478-1491911889:244625..245617 | Clytia hemisphaerica | exon |
TCONS_00067991-exon-scaffold_478-1510915933:244625..245617 | TCONS_00067991-exon-scaffold_478-1510915933:244625..245617 | Clytia hemisphaerica | exon |
TCONS_00067991-exon-scaffold_478-1575043694:244625..245617 | TCONS_00067991-exon-scaffold_478-1575043694:244625..245617 | Clytia hemisphaerica | exon |
TCONS_00067991-exon-scaffold_478-1491911889:246383..246623 | TCONS_00067991-exon-scaffold_478-1491911889:246383..246623 | Clytia hemisphaerica | exon |
TCONS_00067991-exon-scaffold_478-1510915933:246383..246623 | TCONS_00067991-exon-scaffold_478-1510915933:246383..246623 | Clytia hemisphaerica | exon |
TCONS_00067991-exon-scaffold_478-1575043694:246383..246623 | TCONS_00067991-exon-scaffold_478-1575043694:246383..246623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_478 | supercontig | scaffold_478:243351..246623 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
|