Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067984 ID=TCONS_00067984|Name=TCONS_00067984|organism=Clytia hemisphaerica|type=transcript|length=2534bpRun BLAST on NCBI transcript from alignment at scaffold_478:186871..205854+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067984 ID=TCONS_00067984|Name=TCONS_00067984|organism=Clytia hemisphaerica|type=transcript|length=18984bp|location=Sequence derived from alignment at scaffold_478:186871..205854+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00067984 vs. Swiss-Prot (Human)
Match: CHP1 (Calcineurin B homologous protein 1 OS=Homo sapiens GN=CHP1 PE=1 SV=3) HSP 1 Score: 196.438 bits (498), Expect = 2.369e-57 Identity = 102/203 (50.25%), Postives = 139/203 (68.47%), Query Frame = 3 Query: 63 MGSVCATIQLQDEDIAQIQNITGFSPNQIKRLYHRFSNLDKSNKGRLSEEDLLRIPELAINPLGERIVHSFFCHXXXXXXXXXXXXINFTQFVKVLARFRRAENGK-------PQPLNSNDHKLEYAFKMYDMDGTHKISKENICEILTLMVGSNKSSEQLAAIADRTIQEADEDKDGFINFDEFKKVMAKTDFQQKMSIRFL 650 MGS +T+ L+DE++ +I+ TGFS +QI RLY RF++LDK G LS ED RIPELAINPLG+RI+++FF + +NF F++ LA FR E+ + P+PLNS +KL +AF++YD+D KIS++ + ++L +MVG N S EQL +IADRTIQEAD+D D I+F EF KV+ K D +QKMSIRFL Sbjct: 1 MGSRASTL-LRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQ--------VNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFL 194 The following BLAST results are available for this feature:
BLAST of TCONS_00067984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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