|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067976 ID=TCONS_00067976|Name=TCONS_00067976|organism=Clytia hemisphaerica|type=transcript|length=2572bp
AATTCACTATCAGCAGTTATGGATATGTCTTTGCAAACGAGAGCTGTGGA
ACTACTTATACTAAACGATAGGATATTCGTGGATGAAACAAATATCATTG
AGGTTACGATGCAAGAAAAGAAATTCAACCGTCCTTCTATGCGCAAGAAA
AGGCAACCGGTGCCAGAAACGGTTCAAGAAGTTCCAGCTGAGCATAAACG
AGATGATAGTAATATCGCATCCGAATTCAGTCAAGAACTGTTACATATCA
AGtTCGACTCTGTGACAAATACGGCTACAGTAAAACAAACGCCACAGTTG
CCCGGACAGCCAGACAATTCCGGTGATTATGATAACATACCGGGTGATAT
TGAAACgggtaagaaaatattttttattcaaactttCATTATCAGAATCT
ATCTATAGACTATAGTATACTAATGCACATTTAAGAAGAAGGCCTCACTC
AAAAAGCTCATTTTTGATTCGAATAAATTACATTTCCCTTTCGAGCTGAA
AATTGCGAGAGTTCACTGACTCTGTAAAACAGAAACGTTAACTGGATTAT
GTACGTGCGTTTTTCTTCCACGGAGGCGGTAACcttctaatttgtctaca
tcctgactgactgagaaAGTGAAACGGTAAATCAACATTTtcaccgtcct
cgattttgtagGTCAAAACTGTGGGTTATTCCGAATCGCTTCCGTCGATC
CGCCGACGGATGCAAATAAAAAGTGCAAATACTCGCTATTTTCTTACTTT
CTTTACACCTAGATATCGCCGGCGACTTGCCCGTAATACCCAACGTCAAC
GGCAACGCAAACTACAATACGCAAACGTCAACGTCACTTTCCGACACGAC
GGATTACGAGTCGGCGCATTCCCGGCTATCGTCTATAGAATCGCTCCTAG
ACGACGGAAGTGTTAATTTCAATTCTCAAAGTCCTGTTGAATTACCGGAC
GCAAGTAGTCCGGTATCCCCTACATCCGAAGAAATAGATGATGATGTTTG
GATGAATCAATTCGGTAAGGATAATAAACGGAGATCACCAGATTCCGGAC
TAGAGGGTTCACCGGCTACTAACGTTCCTGTGACTTTACCGTTAAAAAAG
AAACCATCATCGCCGAGTAGTCGTTTGGAGACTACAACGTATTCATTTTC
GATAGGAAGTACGGAATTGACTCCGGAAGATGCTAATACGGACCAGCCCG
GAGATTTAAACGATTTAAGCCCGAGCGATAGTTTGGACGGGTTGGAACCA
TTTGTTAAACGTGACTCGAAAGAGCGACAACCGGTACGCGGGAAACATTT
AAAAGCCGTTAACGTAAAAGCGACAATTAACGTCTCACCTGAACAACCTT
CGCCTAAGAGCTCTCCTCAAGTACCTCAGAAAGCGGTCGTTGAGAGTACG
CGCTCGGTCGATTCTGGGATTAATGACGTCAATGATTTACATCAATCTGG
AGTTAGCGTTGAGAATAACAGACACCCTTCGACAGCTTCGGCCGAATCGG
AAAAAGACGGTTCACCTGGATTAACAGTAAACATTACCCAAGCTCAAAAG
CTACAAAACATTACAGAGAAAAGTGAAAATTCTGGCGGTGGTGCTGACCA
AACAACACAAAAATCACCTACCAAACAAGGGCCAATGACTCTACCCAAAC
CAAAGAAAACTCTCGATAAGAAAAGTTGGACTGCGGACTTGATTAAatct
aaaacacaaaaaattccGGAACAACCGCAACCTGGATCTTTAAACGAAAG
ACTTTTACAGCAAGGAAGCGTAAAAAGGCCTTCCGCCACAGCTGAGGATA
TTCCGCCCGTCAGTCCGGATACGCAAGAATCGAGTGACGCCGTATTCCCG
CCACGTAGTGCGTCAGTAGGACACCGGTCCTCCGTAAGAGACATTCGGAA
cagatttcaaaataacttGATTAATAATTCCAGCCCAGGAGACGATCTTC
ATGAATCCACCGAGACTGAGAAATTTGTTTGAACGGAAATTTCCCAATGA
TCAACTCGGTAACCAGAGAGAATGATCAGGGAATTGCCAAATAAAACTTT
TGTCCCCAACAATGGTTTAACTGGTCGCTAGAGAAAAACGATAGCTTcac
ataaaaatgtaaaattagaAAGAGagatagagagagagagagaaataCCG
GACGATCGTAATCGATAAATTCGATTTCATTAGAATTAATAATCGACAAC
TAATCGAGGTTTATCTTACGAGGTTTGAATATCGATCACGTGCTGATGAT
TATTATCGATTCACATTGACTATTATCGATTTCTAGGATCGATTATCAAT
TAGTAAAATCTTTAGTAATCGATTACTGGTAAAGCACGACAAAATCTGAA
TATCGATAAGTTAACGAATGCATCCGATAGTCTATTTCATCGATTACGAT
CGTCCGTGATAGAGAGACTTCGTTTAGTTATCAGAATCCATTTATTTGGG
GTTGCCCTTTTAGATATTTTACTGTAGTATTACGATGAAATTATTTAGAC
TGTTGGCTTTAGTAATATGACATTTTTATATGTCAATTGGCTCAAAAAAC
CGGGAAATGTGCTTAATCATCG Run BLAST on NCBI transcript from alignment at scaffold_478:141741..149201+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067976 ID=TCONS_00067976|Name=TCONS_00067976|organism=Clytia hemisphaerica|type=transcript|length=7461bp|location=Sequence derived from alignment at scaffold_478:141741..149201+ (Clytia hemisphaerica)
AATTCACTATCAGCAGTTATGGATATGTCTTTGCAAACGAGAGCTGTGGA
ACTACTTATACTAAACGATAGGGTTGGTATTATTTTGTCTGAATTGACAT
TTTTTCTTCTAACTAAAAATCTCACGTGGCCTTTTTTTCAACTTCTAAGT
TGAATTTCTATCTTCGATcggagttttcaaaaatctattaCTCGTATCAA
GAAGGGTTTGTATAGCTCACTAGGctaatgttttatttttggaaaagcat
AAAGAAGTGGAGCTATATTGGTAATATACCTTATtgcacgaatattacta
ggcaagcatttaacggccttgaaatctGCACGATCTGAAACTAAcacgaa
tttttctgctttttcaaggaaacagtggctggttttaattaagggggttt
gtTTAATACAATGACACGAATCGTGTTAAtgaaaatgactagtaatattc
gtgtaataaagTAATAACCTTAAATACGGCTGAACTAAAGGTTTCCAACA
TGGACATCTAAGAGTTATAAACTGGAGATTTTTATCTTTAGATATTCGTG
GATGAAACAAATATCATTGAGGTAAGTTATCGAGAAAATTACATCTCCAA
ACGATcgactaccttatcggccaaaacttagtcggccctaagtgactaaa
tttttgcTTGGTGActtaaattagggccgactaaaaatttgggccgacta
aaatcaAGGCCGAccaaaaatttgggccaaattaaaagtttataattgag
ctttttcctattttccatctgcttgtaaatttagaaatgacCCAAACTGT
TAGttggtcttaattattagtcggcccttagtgactaaattttgacaagt
TGACTAAAATCAGGGCCAACTAATAATTAAAGCCGACTAAgatttggccg
ataaggtactatTTTGTTGCTCATTTTAGTTCTAGGTTATTTATTGGTAA
TTTTTCCATCGCCGTTTAGCAATCATAAATGCCTGTGTAtaagactggag
tcgtttatattatgtgtaaaacaaaaatatgaGTGTGATATGataatagc
gagattatgtatctggaattttctacggctacggttaaaGCGGCGAGGGA
AATTGCGAGTAAAGCAAGTAATGGCGgatgaaagcaagttcgatatttga
cgtacggcatcatgtcgactttgcttatacggtgttttggtgttttttcc
GTACAGGgtaaagtagacaacgacatgtcgcctttggtgacgacccgcat
ggacagccccgcaaccgtagccgtaggaTATCTCCACTACATGATCTCGC
TAATGCGATAATTTAAACAGGATACTATCAGCTTCCATagattttatcac
ttttttgctgattcctttcaaaataagagactttcactagctgaaaatat
tttcaaaaattgataaacgaAGTCTGAGGGTTaggaaaaaacgaaaaatt
aacaaacgaGGAGGGCATCTTTGAAGCATCTTTGAGTATACGAATCTAAC
ATATGCATTCTCTGAGGAGCACCATTTTTCGCCGTTCTACCATTACGAAT
AACGaagtagtctagcaagctagacgactaattcagacaaaGTAGAGGTA
AAGCAAAAAGGGATGGAGGGAAAAttcaattttagtttatacaaaataaa
tcccctattattattagtattagtaTTATTAGtcttacacgcattataaa
cgactccagtctaataaCGAAGCGAACTTTATGCCTAATAAGTTAATAAC
CGTGATTTCTTCGTAACCTAGGTTACGATGCAAGAAAAGAAATTCAACCG
TCCTTCTATGCGCAAGAAAAGTAAGAGATTTACATATGTCACGCAGGATT
CTAACGTTCCCACATCGTTCGAAAGCCTTATTTTTTGCTGATTAGACTTT
Atggaagtttttgatttttctaaaaaagcgatgtattgtgggattgtttc
gagtgtattacaatagaaatcttttaggaattcctcgtggaaattctatt
gtaatacactcgaaacaatcccacaatgcatcgcttttttagaaaaatca
aaaactctgataaggtctATCCTGTGCAAATTAGTATTGGGATTAACGGT
GCACAGATTGTTTTCCTACCTGTCTTATAAGCTCTACTTTCTGACCTTTT
AACTTTACTCGTTTTAAATTTAAAACCATGCTCACACGTGACGGTTCcga
ttctattggttagaagtgacgtaacacttgaatgtaaccaatagaatggc
ttcatttcgtttcggagcatGGTCGAAGTCGATCATATAAAAACCTATGT
AATGCCTTCATTTGACACAAATGTAAACAACAACTTATTTAAACGATTCC
CGgaggggaattcaccagggaaAATTTTCTGGCCACGATTTCAACCATTC
ATAAGCAAATATTTTCAACCCTCGCCTACCGTTAGATCATCTGTCTTCTC
TCGTACAGTCAGTCACCGTAACCCTGATTGTTCTCGAACGATTACTGGTT
ATCCCTAAATTCGATAGCATTTAATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtaatacactcgaaacaatcccacaatgc
atcgcttttttagaaaaatcaaaaactctgataaggtctATCCTGTGCAA
ATTAGTATTGGGATTAACGGTGCACAGATTGTTTCCCTACCTGTCTTATA
AGCTCTACTTTCTGACCTTTTAACTTTACTCGTTTTAAATTTAAAACCAT
GCTCACACGTGACGGTTCcgattctattggttagaagtgacgtaacactt
gaatgtaaccaatagaatggcttcatttcgtttcggagcatGGTCGAAGT
CGATCATATAAAAACCTATGTAATGCCTTCATTTGACACAAATGTAAACA
ACAACTTATTTAAACGATTCCCGgaggggaattcaccagggaaAATTTTC
TGGCCACGATTTCAACCATTCATAAGCAAATATTTTCAACCCTCGCCTAC
CGTTAGATCATCTGTCTTCTCTCGTACAGTCAGTCACCGTAACCCTGATT
GTTCTCGAACGATTACTGGTTATCCCTAAATTCGATAGCATTTAATGGGT
ACAAAAATATACTGTTTAAATTGAAAGAAGTAGACGCTATAAAGGTAACA
CATCCATCCATAAAGGTAAAACATCGTGGATTCAATCCCTGACCGGGtcg
tcataccaaagacttcgtaCATAGTacaatggtacttgatgcctctctac
atgatgctcagtaattaaagggacattacagtaataaaatgtaaacattg
cgcgaaccacgtgtcattaaaaagaacaattaaaatcacgtgtccaaaac
aaacttgtaaaacaattgaacaatcataATTANGAAAGCCTTATTTTTTG
CTGATTAGACTTTAtggaagtttttgatttttctaaaaaagcgatgtatt
gtgggattgtttcgagtgtattacaatagaaatcttttaggaattcctcg
tggaaattctattgtaatacactcgaaacaatcccacaatgcatcgcttt
tttagaaaaatcaaaaactctgataaggtctATCCTGTGCAAATTAGTAT
TGGGATTAACGGTGCACAGATTGTTTTCCTACCTGTCTTATAAGCTCTAC
TTTCTGACCTTTTAACTTTACTCGTTTTAAATTTAAAACCATGCTCACAC
GTGACGGTTCcgattctattggttagaagtgacgtaacacttgaatgtaa
ccaatagaatggcttcatttcgtttcggagcatGGTCGAAGTCGATCATA
TAAAAACCTATGTAATGCCTTCATTTGACACAAATGTAAACAACAACTTA
TTTAAACGATTCCCGgaggggaattcaccagggaaAATTTTCTGGCCACG
ATTTCAACCATTCATAAGCAAATATTTTCAACCCTCGCCTACCGTTAGAT
CATCTGTCTTCTCTCGTACAGTCAGTCACCGTAACCCTGATTGTTCTCGA
ACGATTACTGGTTATCCCTAAATTCGATAGCATTTAATGGGTACAAAAAT
ATACTGTTTAAATTGAAAGAAGTAGACGCTATAAAGGTAACACATCCATC
CATAAAGGTAAAACATCGTGGATTCAATCCCTGACCGGGTCGTCATACCA
AAGACTTCGTACATAGTACAATGGTACTTGATGCCTCTCTACATGATGCT
CAGTAATTAAAGGGACATTACAGTAAtaaaatgtaaacattgcgcgaacc
acgtgtcattaaaaagaacaattaaaatcacgtgtccaaaacaaacttgt
aaaacaattgaacaatcataattagccatatttggttagatttttttatt
ttgacatgtgacatttgttttgattttgtatccgctgcatacagtttgtt
tacaaattttgcaagtactgttatgtccctttaaagatcAAGGGTGATTG
GAACAATCCGGGGAATGGAGTGCCGCCCTCCCCTTCATTTGGGTAGAAAA
CTAAGGAAGCCTTCTGGGTCGCCCACGACTATGGTCGCAAATGTACTACG
TTACTCAACTAATAATGGTGAATTTCATTCAACTTCAGGGCAACCGGTGC
CAGAAACGGTTCAAGAAGTTCCAGCTGAGCATAAACGAGATGATAGTAAT
ATCGCATCCGAATTCAGTCAAGAACTGTTACATATCAAGGTATCAGGCTT
TTTTCtattatattcatgatatgcaccattgcaatgtcttctgacattac
atcacggacccgatagctgattggttgtaagtgacgtaatatcagtcaat
atgtcacttgcaaacaatcagctgttgggtccgtggaagacattgcaatg
atgcatatcatgaattgtataCTCAGCGGTGTACTGTACTGTAAAATGCA
TTTATacaaaatttcttgattttgaattattttaaagTGACTGTACCGTC
GCAGCGCTATacgaatttttgcaattttagggCGTTTGATTGTTCGCCGT
AAGCGAATATTCACGGAAACACTGATCAAGGAAGACCGATTTTCGAGATA
ACAGGTGTATTGTGGAGCACAGTAAAGCAAATTGTCTTACACTGTAACTG
TAGCGAGTGGAATAAAAGGCTATCctttatatttcttttagtTCGACTCT
GTGACAAATACGGCTACAGTAAAACAAACGCCACAGTTGCCCGGACAGCC
AGACAATTCCGGTGATTATGATAACATACCGGGTGATATTGAAACgggta
agaaaatattttttattcaaactttCATTATCAGAATCTATCTATAGACT
ATAGTATACTAATGCACATTTAAGAAGAAGGCCTCACTCAAAAAGCTCAT
TTTTGATTCGAATAAATTACATTTCCCTTTCGAGCTGAAAATTGCGAGAG
TTCACTGACTCTGTAAAACAGAAACGTTAACTGGATTATGTACGTGCGTT
TTTCTTCCACGGAGGCGGTAACcttctaatttgtctacatcctgactgac
tgagaaAGTGAAACGGTAAATCAACATTTtcaccgtcctcgattttgtag
GTCAAAACTGTGGGTTATTCCGAATCGCTTCCGTCGATCCGCCGACGGAT
GCAAATAAAAAGTGCAAATACTCGCTATTTTCTTACTTTCTTTACACCTA
GATATCGCCGGCGACTTGCCCGTAATACCCAACGTCAACGGCAACGCAAA
CTACAATACGCAAACGTCAACGTCACTTTCCGACACGACGGATTACGAGT
CGGCGCATTCCCGGCTATCGTCTATAGAATCGCTCCTAGACGACGGAAGT
GTTAATTTCAATTCTCAAAGTCCTGTTGAATTACCGGACGCAAGTAGTCC
GGTATCCCCTACATCCGAAGAAATAGATGATGATGTTTGGATGAATCAAT
TCGGTAAGGATAATAAACGGAGATCACCAGATTCCGGACTAGAGGGTTCA
CCGGCTACTAACGTTCCTGTGACTTTACCGTTAAAAAAGAAACCATCATC
GCCGAGTAGTCGTTTGGAGACTACAACGTATTCATTTTCGATAGGAAGTA
CGGAATTGACTCCGGAAGATGCTAATACGGACCAGCCCGGAGATTTAAAC
GATTTAAGCCCGAGCGATAGTTTGGACGGGTTGGAACCATTTGTTAAACG
TGACTCGAAAGAGCGACAACCGGTACGCGGGAAACATTTAAAAGCCGTTA
ACGTAAAAGCGACAATTAACGTCTCACCTGAACAACCTTCGCCTAAGAGC
TCTCCTCAAGTACCTCAGAAAGCGGTCGTTGAGAGTACGCGCTCGGTCGA
TTCTGGGATTAATGACGTCAATGATTTACATCAATCTGGAGTTAGCGTTG
AGAATAACAGACACCCTTCGACAGCTTCGGCCGAATCGGAAAAAGACGGT
TCACCTGGATTAACAGTAAACATTACCCAAGCTCAAAAGCTACAAAACAT
TACAGAGAAAAGTGAAAATTCTGGCGGTGGTGCTGACCAAACAACACAAA
AATCACCTACCAAACAAGGGCCAATGACTCTACCCAAACCAAAGAAAACT
CTCGATAAGAAAAGTTGGACTGCGGACTTGATTAAatctaaaacacaaaa
aattccGGAACAACCGCAACCTGGATCTTTAAACGAAAGACTTTTACAGC
AAGGAAGCGTAAAAAGGCCTTCCGCCACAGCTGAGGATATTCCGCCCGTC
AGTCCGGATACGCAAGAATCGAGTGACGCCGTATTCCCGCCACGTAGTGC
GTCAGTAGGACACCGGTCCTCCGTAAGAGACATTCGGAAcagatttcaaa
ataacttGATTAATAATTCCAGCCCAGGAGACGATCTTCATGAATCCACC
GAGACTGAGAAATTTGTTTGAACGGAAATTTCCCAATGATCAACTCGGTA
ACCAGAGAGAATGATCAGGGAATTGCCAAATAAAACTTTTGTCCCCAACA
ATGGTTTAACTGGTCGCTAGAGAAAAACGATAGCTTcacataaaaatgta
aaattagaAAGAGagatagagagagagagagaaataCCGGACGATCGTAA
TCGATAAATTCGATTTCATTAGAATTAATAATCGACAACTAATCGAGGTT
TATCTTACGAGGTTTGAATATCGATCACGTGCTGATGATTATTATCGATT
CACATTGACTATTATCGATTTCTAGGATCGATTATCAATTAGTAAAATCT
TTAGTAATCGATTACTGGTAAAGCACGACAAAATCTGAATATCGATAAGT
TAACGAATGCATCCGATAGTCTATTTCATCGATTACGATCGTCCGTGATA
GAGAGACTTCGTTTAGTTATCAGAATCCATTTATTTGGGGTTGCCCTTTT
AGATATTTTACTGTAGTATTACGATGAAATTATTTAGACTGTTGGCTTTA
GTAATATGACATTTTTATATGTCAATTGGCTCAAAAAACCGGGAAATGTG
CTTAATCATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067976-exon-scaffold_478-1491911889:141741..141812 | TCONS_00067976-exon-scaffold_478-1491911889:141741..141812 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1510915933:141741..141812 | TCONS_00067976-exon-scaffold_478-1510915933:141741..141812 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1575043694:141741..141812 | TCONS_00067976-exon-scaffold_478-1575043694:141741..141812 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1491911889:142282..142311 | TCONS_00067976-exon-scaffold_478-1491911889:142282..142311 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1510915933:142282..142311 | TCONS_00067976-exon-scaffold_478-1510915933:142282..142311 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1575043694:142282..142311 | TCONS_00067976-exon-scaffold_478-1575043694:142282..142311 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1491911889:143512..143560 | TCONS_00067976-exon-scaffold_478-1491911889:143512..143560 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1510915933:143512..143560 | TCONS_00067976-exon-scaffold_478-1510915933:143512..143560 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1575043694:143512..143560 | TCONS_00067976-exon-scaffold_478-1575043694:143512..143560 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1491911889:146329..146429 | TCONS_00067976-exon-scaffold_478-1491911889:146329..146429 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1510915933:146329..146429 | TCONS_00067976-exon-scaffold_478-1510915933:146329..146429 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1575043694:146329..146429 | TCONS_00067976-exon-scaffold_478-1575043694:146329..146429 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1491911889:146882..149201 | TCONS_00067976-exon-scaffold_478-1491911889:146882..149201 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1510915933:146882..149201 | TCONS_00067976-exon-scaffold_478-1510915933:146882..149201 | Clytia hemisphaerica | exon |
| TCONS_00067976-exon-scaffold_478-1575043694:146882..149201 | TCONS_00067976-exon-scaffold_478-1575043694:146882..149201 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:141741..149201 + |
Blast
The following BLAST results are available for this feature:
|
