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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067971 ID=TCONS_00067971|Name=TCONS_00067971|organism=Clytia hemisphaerica|type=transcript|length=2917bpRun BLAST on NCBI protein sequence of TCONS_00067971-protein >TCONS_00067971-protein ID=TCONS_00067971-protein|Name=TCONS_00067971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp WNQLISSFIEGMELKRRRYRFKSYENSFSGTDALDWMLKYLQNHPSYGDNRun BLAST on NCBI transcript from alignment at scaffold_478:87386..106560+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067971 ID=TCONS_00067971|Name=TCONS_00067971|organism=Clytia hemisphaerica|type=transcript|length=19175bp|location=Sequence derived from alignment at scaffold_478:87386..106560+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_478:87386..106560+ >TCONS_00067971 ID=TCONS_00067971|Name=TCONS_00067971|organism=Clytia hemisphaerica|type=CDS|length=19953bp|location=Sequence derived from alignment at scaffold_478:87386..106560+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067971 vs. Swiss-Prot (Human)
Match: DEP1B (DEP domain-containing protein 1B OS=Homo sapiens GN=DEPDC1B PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 4.114e-24 Identity = 90/344 (26.16%), Postives = 168/344 (48.84%), Query Frame = 3
Query: 1227 MLSKERLTPEQLQDTWKSVVLLSLRKLMRMEHVGEYIDEYQISGQAIMQNMECNEK-------SVKDSIPEWLFSAMECLMKWPNYDQRGVVGDL--PNYIGFHCDVFHAIKEHYHSSSDDPLIPCHLTSLLEECMEYADTDIEITIQVLQHMILLIDNEQRCHLQALVYFMKKVSDNPFLR-ISNDLSNKDLMVHSFFRII--SRKESHFLINQTEILGIRVVYCLMQFYDEIFTAPKGLRVQVDHKIAVIYGNLHQNAQKRIKIDTGRPSSADAVNKRVIKRPVTYCEQISKQEYQQEAVDFSKQEIKKLLQAIVNDRSLSSKEVTRRLGQFKTAYPDIY*E 2222
++ + +LT +++ WKS+ L L+K++ ++ + E +D ++ + I+ N+ K +P W+ SAM+CL WPN DL P Y+GF DVF I ++Y +PL+ HL + + ++ ++ Q LL+ E R LQ L+ M ++ N + + + + LMV +F R I S+ E ++ E+L R+V LM Y EI P L+ ++ ++A + +R++I + + ++C QIS +E++ + S++ + LL+ ++ D LS+KE ++L QF+ +YP++Y E
Sbjct: 171 LVHRRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPN------CSDLKQPMYLGFEKDVFKTIADYY-GHLKEPLLTFHLFDAFVSVLGLLQKE-KVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDE----VDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHL---------RRVQI------KYPGADMDITLSAPSFCRQISPEEFEYQRSYGSQEPLAALLEEVITDAKLSNKEKKKKLKQFQKSYPEVYQE 487 The following BLAST results are available for this feature:
BLAST of TCONS_00067971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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