TCONS_00067965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067965
Unique NameTCONS_00067965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067965 ID=TCONS_00067965|Name=TCONS_00067965|organism=Clytia hemisphaerica|type=transcript|length=389bp
AGGCAGCAAAGGCACACAAAATGGCAGGGAACATGGCTGGGTAATAAGGG
GTCGATCTTTATGGTGgggcttctttttgtgctttggtttttCTTAAGTT
AAAGATATATCATAGTAATGGATTATCGAAGTAATCGTTTGGTTATGGAA
AGTACTCAATACaatcgaaggtattcaataAGATTGAAGGTAATGGTGGT
TaaagaaaatgccataatctgGAATTGATGAGTATTTGATCACCGATAAA
ATTGATAGGTGGTCACTGACTaccttcgattattatcgatcattattgat
tacttcgatcatcACAATCAAACGTTTGAATAGTACCGTCTGGGTTtctt
ggcaaacgatatcatcagAGATGATATAGcatgcatcct
Run BLAST on NCBI

transcript from alignment at scaffold_477:532081..532469

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067965 ID=TCONS_00067965|Name=TCONS_00067965|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at scaffold_477:532081..532469 (Clytia hemisphaerica)
aggatgcatgCTATATCATCTctgatgatatcgtttgccaagaAACCCAG
ACGGTACTATTCAAACGTTTGATTGTgatgatcgaagtaatcaataatga
tcgataataatcgaaggtAGTCAGTGACCACCTATCAATTTTATCGGTGA
TCAAATACTCATCAATTCcagattatggcattttctttAACCACCATTAC
CTTCAATCTtattgaataccttcgattGTATTGAGTACTTTCCATAACCA
AACGATTACTTCGATAATCCATTACTATGATATATCTTTAACTTAAGaaa
aaccaaagcacaaaaagaagcccCACCATAAAGATCGACCCCTTATTACC
CAGCCATGTTCCCTGCCATTTTGTGTGCCTTTGCTGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042448XLOC_042448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067965-exon-scaffold_477-1491911889:532081..532469TCONS_00067965-exon-scaffold_477-1491911889:532081..532469Clytia hemisphaericaexon
TCONS_00067965-exon-scaffold_477-1510915933:532081..532469TCONS_00067965-exon-scaffold_477-1510915933:532081..532469Clytia hemisphaericaexon
TCONS_00067965-exon-scaffold_477-1575043694:532081..532469TCONS_00067965-exon-scaffold_477-1575043694:532081..532469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:532081..532469 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.618113	0.192202	2.90115	2.61999	0.531597	0	0.506803	0.474462	0.332182	0	0	0.131267	0	0.272264	0.335757	0.120106	0.147961	0	0	0	0.190566	0	0	0.410914	0	0.377724	0	0.28843	0	0.445772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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