|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067960 ID=TCONS_00067960|Name=TCONS_00067960|organism=Clytia hemisphaerica|type=transcript|length=1261bp
aattacccattaaaactaagcactttttgtaaaagagggtgatgcaacat
attattaacatccttttaaagttcataacgtcatttttgcaattaaattc
ttaattactcttaagggattcgattaaaaagcaatttataaagacaAGTC
Ttcgttaaaagtgttaaggaacctgaaatataacttttatgttcaaatac
caaaatcaatttttggactatggtcagagcccttaagtgaaATAAAGCCA
ATTCAAAATTTAGTCCACACGAGAATTTTAGGTTTCCCTATTCACTATAT
TAATCCACTCAAACTTTCCTTTTCTTTTCGTACAGGGAATGCGTTGCGAC
CTATGGTATGATGTGCCAACAATGCGATACTTCCGACATTCCTGAAGATG
GGGTCGCTCTTGCTGGCTCCGAATCCGACCAAGCACGTCTTGGGCCCATC
GGTGCCGTTGATACAAGCCAATCAGCTGGTTTAAGTTACGATTACCGTTA
CCAAGCACAACAAGGTGGTTACTATGACGGATCTTACGGCAACGGATATT
TGGATACTTACGGACAATATTCGTACAGAAAACGTCGGAGTTTACGACAG
AAGCCTGGACGACCAACTATCGTTCAACTTAGCCCGAATGCGAAAGTACA
CACAAAGATCGTACAATACGCTCCTACATTAAGAGGTATCGAGAAACATC
TTCATTACACAATTGTGCGTGGAGATAGCACATTGTTCGGGCTCAACCAA
GACAAACGTGGACGCACTTACGTTGAAACCTTGGCCTCACTTCCTAAAGG
AATCTATGATTTGATGATCAGTGGAAAATTGAAAGATCTGGATGGCTATT
CAGATGCCGAGAGACAAGCGTTCATGGATAAATTCAGTGACATGGGTTTC
CGATCGAAATATCAAGTCCAAGTTCGATAAAACAATCGATAAACTTTCGA
ATAAAAACGAATAACTTTTTTACCCTTAGACTTTAGTAGAATGATCATAG
TCATTTTTGTATtctcttttttgtatttttagtaGTAGTTCTTAAAAACC
ATATTTAAAACGTGAATAGATATTTTAtatgatgaatttgaaaaactAGA
GTGTCAGCTTGCTTTTCCAATACTTCCAGGTTTGACCTAAATCATATCCA
TTTATTTTGGTATGTAACCCCTGTGAAGCATGTTTTAAGATTTGGTATCA
AAACTTAGATTTGAGAATTCTGTTTGTCAGTAAAAGCCAAagtcaaaatc
acaaaaacgcG Run BLAST on NCBI protein sequence of TCONS_00067960-protein >TCONS_00067960-protein ID=TCONS_00067960-protein|Name=TCONS_00067960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MMCQQCDTSDIPEDGVALAGSESDQARLGPIGAVDTSQSAGLSYDYRYQA
QQGGYYDGSYGNGYLDTYGQYSYRKRRSLRQKPGRPTIVQLSPNAKVHTK
IVQYAPTLRGIEKHLHYTIVRGDSTLFGLNQDKRGRTYVETLASLPKGIY
DLMISGKLKDLDGYSDAERQAFMDKFSDMGFRSKYQVQVR Run BLAST on NCBI transcript from alignment at scaffold_477:431995..433255 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067960 ID=TCONS_00067960|Name=TCONS_00067960|organism=Clytia hemisphaerica|type=transcript|length=1261bp|location=Sequence derived from alignment at scaffold_477:431995..433255 (Clytia hemisphaerica)
CgcgtttttgtgattttgactTTGGCTTTTACTGACAAACAGAATTCTCA
AATCTAAGTTTTGATACCAAATCTTAAAACATGCTTCACAGGGGTTACAT
ACCAAAATAAATGGATATGATTTAGGTCAAACCTGGAAGTATTGGAAAAG
CAAGCTGACACTCTagtttttcaaattcatcataTAAAATATCTATTCAC
GTTTTAAATATGGTTTTTAAGAACTACtactaaaaatacaaaaaagagaA
TACAAAAATGACTATGATCATTCTACTAAAGTCTAAGGGTAAAAAAGTTA
TTCGTTTTTATTCGAAAGTTTATCGATTGTTTTATCGAACTTGGACTTGA
TATTTCGATCGGAAACCCATGTCACTGAATTTATCCATGAACGCTTGTCT
CTCGGCATCTGAATAGCCATCCAGATCTTTCAATTTTCCACTGATCATCA
AATCATAGATTCCTTTAGGAAGTGAGGCCAAGGTTTCAACGTAAGTGCGT
CCACGTTTGTCTTGGTTGAGCCCGAACAATGTGCTATCTCCACGCACAAT
TGTGTAATGAAGATGTTTCTCGATACCTCTTAATGTAGGAGCGTATTGTA
CGATCTTTGTGTGTACTTTCGCATTCGGGCTAAGTTGAACGATAGTTGGT
CGTCCAGGCTTCTGTCGTAAACTCCGACGTTTTCTGTACGAATATTGTCC
GTAAGTATCCAAATATCCGTTGCCGTAAGATCCGTCATAGTAACCACCTT
GTTGTGCTTGGTAACGGTAATCGTAACTTAAACCAGCTGATTGGCTTGTA
TCAACGGCACCGATGGGCCCAAGACGTGCTTGGTCGGATTCGGAGCCAGC
AAGAGCGACCCCATCTTCAGGAATGTCGGAAGTATCGCATTGTTGGCACA
TCATACCATAGGTCGCAACGCATTCCCTGTACGAAAAGAAAAGGAAAGTT
TGAGTGGATTAATATAGTGAATAGGGAAACCTAAAATTCTCGTGTGGACT
AAATTTTGAATTGGCTTTATttcacttaagggctctgaccatagtccaaa
aattgattttggtatttgaacataaaagttatatttcaggttccttaaca
cttttaacgaAGACTtgtctttataaattgctttttaatcgaatccctta
agagtaattaagaatttaattgcaaaaatgacgttatgaactttaaaagg
atgttaataatatgttgcatcaccctcttttacaaaaagtgcttagtttt
aatgggtaatt Coding sequence (CDS) from alignment at scaffold_477:431995..433255 >TCONS_00067960 ID=TCONS_00067960|Name=TCONS_00067960|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_477:431995..433255 (Clytia hemisphaerica)
TTATCGAACTTGGACTTGATATTTCGATCGGAAACCCATGTCACTGAATT
TATCCATGAACGCTTGTCTCTCGGCATCTGAATAGCCATCCAGATCTTTC
AATTTTCCACTGATCATCAAATCATAGATTCCTTTAGGAAGTGAGGCCAA
GGTTTCAACGTAAGTGCGTCCACGTTTGTCTTGGTTGAGCCCGAACAATG
TGCTATCTCCACGCACAATTGTGTAATGAAGATGTTTCTCGATACCTCTT
AATGTAGGAGCGTATTGTACGATCTTTGTGTGTACTTTCGCATTCGGGCT
AAGTTGAACGATAGTTGGTCGTCCAGGCTTCTGTCGTAAACTCCGACGTT
TTCTGTACGAATATTGTCCGTAAGTATCCAAATATCCGTTGCCGTAAGAT
CCGTCATAGTAACCACCTTGTTGTGCTTGGTAACGGTAATCGTAACTTAA
ACCAGCTGATTGGCTTGTATCAACGGCACCGATGGGCCCAAGACGTGCTT
GGTCGGATTCGGAGCCAGCAAGAGCGACCCCATCTTCAGGAATGTCGGAA
GTATCGCATTGTTGGCACATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067960-exon-scaffold_477-1491911889:431995..433255 | TCONS_00067960-exon-scaffold_477-1491911889:431995..433255 | Clytia hemisphaerica | exon |
| TCONS_00067960-exon-scaffold_477-1510915933:431995..433255 | TCONS_00067960-exon-scaffold_477-1510915933:431995..433255 | Clytia hemisphaerica | exon |
| TCONS_00067960-exon-scaffold_477-1575043694:431995..433255 | TCONS_00067960-exon-scaffold_477-1575043694:431995..433255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:431995..433255 . |
Blast
The following BLAST results are available for this feature:
|
