TCONS_00067957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067957
Unique NameTCONS_00067957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067957 ID=TCONS_00067957|Name=TCONS_00067957|organism=Clytia hemisphaerica|type=transcript|length=258bp
CTGAATTAGATTCATCTACAAACTTTCAACTTTTCAACAGGAATTGTGAG
GGACCTATTTTGTGTGATATCTATGATATCGATATTTAGTAAAATGAGTT
GTGTTTTATACAACTACTCTCGAGTGAAAAATTCCGAGAGTAAAGGTAGA
TTGTTGATTTTTATCTTTcattatatattatttattatatatttttatta
tatttattatgcacagtaaaaaaagaaatttgtagtttttaaattattat
acCAGATA
Run BLAST on NCBI

transcript from alignment at scaffold_477:340170..340427

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067957 ID=TCONS_00067957|Name=TCONS_00067957|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at scaffold_477:340170..340427 (Clytia hemisphaerica)
TATCTGgtataataatttaaaaactacaaatttctttttttactgtgcat
aataaatataataaaaatatataataaataatatataatgAAAGATAAAA
ATCAACAATCTACCTTTACTCTCGGAATTTTTCACTCGAGAGTAGTTGTA
TAAAACACAACTCATTTTACTAAATATCGATATCATAGATATCACACAAA
ATAGGTCCCTCACAATTCCTGTTGAAAAGTTGAAAGTTTGTAGATGAATC
TAATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042440XLOC_042440Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067957-exon-scaffold_477-1491911889:340170..340427TCONS_00067957-exon-scaffold_477-1491911889:340170..340427Clytia hemisphaericaexon
TCONS_00067957-exon-scaffold_477-1510915933:340170..340427TCONS_00067957-exon-scaffold_477-1510915933:340170..340427Clytia hemisphaericaexon
TCONS_00067957-exon-scaffold_477-1575043694:340170..340427TCONS_00067957-exon-scaffold_477-1575043694:340170..340427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:340170..340427 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03037	0	0	0	3.65076	1.44244	1.74024	5.70218	0.570319	1.41286	2.05704	2.70443	2.25056	1.86978	1.53722	2.4745	5.08064	2.083	1.43889	1.50569	3.92616	4.78761	2.32798	3.52746	0	3.24255	4.64007	11.8848	3.00474	1.53068
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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