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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067952 ID=TCONS_00067952|Name=TCONS_00067952|organism=Clytia hemisphaerica|type=transcript|length=2323bp
tctagacAATTCAATAAGAACATAGAATTTTCTTCATCACAAACAATATT
GATAAACATCAATTGACAATGGTTCTGGCACCACCCCCGGATTTTAATTT
ACTACTTTCAACAGATCGTATCTTGAAATTTGAGCCGCTATTAAAAGATA
CCAAACTCTTTGGAGATAAAGATACTGAAGTTAACAAAGGAGGAGATAAC
ACCTCTGAAAGTTCTGGTAAATGTACCACATTAACTGAATATCCTGCTGT
AGAATCTAACAAGGATTCtactgaaagtgaaagtaagaATGGAAATACTG
AGAAAGTACAACTGTTACCTCAGGGAACTATAAAAGAGCGAAACGAATGC
ATATATCCGGAGGAAAATcaacaagattttgaaaatcaatcTATCAGCGT
TGGGGACTCTAAAGCTACAGTGAATGGACAATCAAAAGGTGTGTTTGATC
GAATTAGGAGTGAGGATAAATCTTCCAAAACCGTTAACCAGGGGGTGATC
CCTTCAATAGAATCATCTTCTAAAAGTGATACAAACTCTGATCGGATCAA
GAGGAAAATTAGTAGCAATCTAATACGTATTGACGATAGTTGTAAGGAAC
TTCAGAACacaattttaagtcaaaatcaAGACATTATTTGTGAAAGTGAG
GAGAAGAACGAATCTTTTGGGCGAGATCAAATTAGCGTTGTTGGTGTAGA
GACTACCCCTCACCAGGACGATAACCTTCAAAGCCAGtcaaaagagaaaa
caaaacgtATCATGCTCAAAGATACTAGCCAGGATACTATAAAACCACCA
GCGATTCAACTTCAAAATAGTTTAGATTGTGAAGATATTCAACCTCGGAA
AAGATGCAGCCCTACAATGGTGTCGAAAGATAAAccaatgaaattttatt
caagatACAGTAGTAGTCAGGAAAGCCTGGGTTCTAGAAATTCATCCATG
AGTAGTATTGGGTACGAAATTAAACGAAACTCAAGTCCTGAGGTTTTATC
CATTGAAAAGACTAGTAGCGGATCACCTCAATTCTTATCGAAGAGTATGA
CGAATTTGAGCTATCGTAAAATGCTGAGCGAGGACGAAAATCATCATTCA
CGTAAAAGACTTTCCAACTTTTTCTCATCCCGCAATAGCATTCACGAGGG
TGACCATAACAATGGATTACGTACTGAAAGTCATTGGCCTAAACCACGCA
CGCCATCCCTGTTTCGACGATTCAGTATGAAAACACCACAAAATACAGAG
CATGCGCAGAGCTATATAAATGTAATCGTGCCTGAAGTTAATATATTAGA
TGATGCCGAGAGTTCGACAAATAATGGCGGAAGAACTTCAGGGAAAGGTA
TATTTCGAAATCTTTCATTCCGGTCGGCTACCAGATTGAATTTAGAAAAC
CTGCAAGAAGATGCAGTGCATGCGTTGAAGCCACCACCACCACAAGTGAA
AAGTTTTCCTGGGTTAAAATCACCTTTCTCTCGCTCCAAGTTCGAACGCG
ATACGGCCGAAATGCGAAAGAGAGTTTATGATGAAATGTTAAAGAGTATT
CAAGATGGCGACTGCAAGAGATTGAAATTATTGTTAAAACGCCGGCGAAC
AGATATAAACACTTTGGAACATAACCATTCTTTGATCCATGAAGCAGCTT
ATAAGGGATGTATGAAATGCGTGAAAGCTTTAATCAAGTCAGGCTGGTCT
GTAAGCTTATCTGACGAGGCAGGTTGGAAACCAATCCACTCAGCTGTTTT
TGGGGAAGACTTAGAGACGGTGAAATGTCTTTTACAGAAAGACGTCGATG
TCAACATCATAACGATTGACGGATACACGCCGTTACATTTCGCCATTTAT
AACGACGATTTATTTACGACGTATGAGTTGATTCAACATGGCGCTGATCC
ACTGTTTCAAAGTAAACATGAAATCGCAACTCCATTCCAATGGGCTATCA
ACCTTAAAAGGACTACTATACTAGACTATTTGTTGATGTTGGCTTGCTTT
CGAAGTGTATAGAATGGGGTGAAATGGTAACCATTGTTTCTTTCGCATTT
GTCGTCCGGTTGTATTACCCgtatatttttaaataaagaatTCTTGGCAT
TATGGGTAAAGTCATGTGGCACATTTTCTTTATTGTgcttaaagtttttt
aaatttgtaaatgtttatttaaaaaaagtcatatTCATAAAAGGTGTTAA
TGGTTTGATTACTTAGCTAAAGTCTGTCTTAATATATTCTGCAACGGAGA
CAAAAAAAGATTGTAACCTTTGATAGAATAGCAACTAAAAAGCGGTTTTG
AGTTTGTTGATAAGATATTgaag Run BLAST on NCBI protein sequence of TCONS_00067952-protein >TCONS_00067952-protein ID=TCONS_00067952-protein|Name=TCONS_00067952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=647bp
MVLAPPPDFNLLLSTDRILKFEPLLKDTKLFGDKDTEVNKGGDNTSESSG
KCTTLTEYPAVESNKDSTESESKNGNTEKVQLLPQGTIKERNECIYPEEN
QQDFENQSISVGDSKATVNGQSKGVFDRIRSEDKSSKTVNQGVIPSIESS
SKSDTNSDRIKRKISSNLIRIDDSCKELQNTILSQNQDIICESEEKNESF
GRDQISVVGVETTPHQDDNLQSQSKEKTKRIMLKDTSQDTIKPPAIQLQN
SLDCEDIQPRKRCSPTMVSKDKPMKFYSRYSSSQESLGSRNSSMSSIGYE
IKRNSSPEVLSIEKTSSGSPQFLSKSMTNLSYRKMLSEDENHHSRKRLSN
FFSSRNSIHEGDHNNGLRTESHWPKPRTPSLFRRFSMKTPQNTEHAQSYI
NVIVPEVNILDDAESSTNNGGRTSGKGIFRNLSFRSATRLNLENLQEDAV
HALKPPPPQVKSFPGLKSPFSRSKFERDTAEMRKRVYDEMLKSIQDGDCK
RLKLLLKRRRTDINTLEHNHSLIHEAAYKGCMKCVKALIKSGWSVSLSDE
AGWKPIHSAVFGEDLETVKCLLQKDVDVNIITIDGYTPLHFAIYNDDLFT
TYELIQHGADPLFQSKHEIATPFQWAINLKRTTILDYLLMLACFRSV Run BLAST on NCBI transcript from alignment at scaffold_477:174256..176578 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067952 ID=TCONS_00067952|Name=TCONS_00067952|organism=Clytia hemisphaerica|type=transcript|length=2323bp|location=Sequence derived from alignment at scaffold_477:174256..176578 (Clytia hemisphaerica)
cttcAATATCTTATCAACAAACTCAAAACCGCTTTTTAGTTGCTATTCTA
TCAAAGGTTACAATCTTTTTTTGTCTCCGTTGCAGAATATATTAAGACAG
ACTTTAGCTAAGTAATCAAACCATTAACACCTTTTATGAatatgactttt
tttaaataaacatttacaaatttaaaaaactttaagcACAATAAAGAAAA
TGTGCCACATGACTTTACCCATAATGCCAAGAattctttatttaaaaata
tacGGGTAATACAACCGGACGACAAATGCGAAAGAAACAATGGTTACCAT
TTCACCCCATTCTATACACTTCGAAAGCAAGCCAACATCAACAAATAGTC
TAGTATAGTAGTCCTTTTAAGGTTGATAGCCCATTGGAATGGAGTTGCGA
TTTCATGTTTACTTTGAAACAGTGGATCAGCGCCATGTTGAATCAACTCA
TACGTCGTAAATAAATCGTCGTTATAAATGGCGAAATGTAACGGCGTGTA
TCCGTCAATCGTTATGATGTTGACATCGACGTCTTTCTGTAAAAGACATT
TCACCGTCTCTAAGTCTTCCCCAAAAACAGCTGAGTGGATTGGTTTCCAA
CCTGCCTCGTCAGATAAGCTTACAGACCAGCCTGACTTGATTAAAGCTTT
CACGCATTTCATACATCCCTTATAAGCTGCTTCATGGATCAAAGAATGGT
TATGTTCCAAAGTGTTTATATCTGTTCGCCGGCGTTTTAACAATAATTTC
AATCTCTTGCAGTCGCCATCTTGAATACTCTTTAACATTTCATCATAAAC
TCTCTTTCGCATTTCGGCCGTATCGCGTTCGAACTTGGAGCGAGAGAAAG
GTGATTTTAACCCAGGAAAACTTTTCACTTGTGGTGGTGGTGGCTTCAAC
GCATGCACTGCATCTTCTTGCAGGTTTTCTAAATTCAATCTGGTAGCCGA
CCGGAATGAAAGATTTCGAAATATACCTTTCCCTGAAGTTCTTCCGCCAT
TATTTGTCGAACTCTCGGCATCATCTAATATATTAACTTCAGGCACGATT
ACATTTATATAGCTCTGCGCATGCTCTGTATTTTGTGGTGTTTTCATACT
GAATCGTCGAAACAGGGATGGCGTGCGTGGTTTAGGCCAATGACTTTCAG
TACGTAATCCATTGTTATGGTCACCCTCGTGAATGCTATTGCGGGATGAG
AAAAAGTTGGAAAGTCTTTTACGTGAATGATGATTTTCGTCCTCGCTCAG
CATTTTACGATAGCTCAAATTCGTCATACTCTTCGATAAGAATTGAGGTG
ATCCGCTACTAGTCTTTTCAATGGATAAAACCTCAGGACTTGAGTTTCGT
TTAATTTCGTACCCAATACTACTCATGGATGAATTTCTAGAACCCAGGCT
TTCCTGACTACTACTGTatcttgaataaaatttcattggTTTATCTTTCG
ACACCATTGTAGGGCTGCATCTTTTCCGAGGTTGAATATCTTCACAATCT
AAACTATTTTGAAGTTGAATCGCTGGTGGTTTTATAGTATCCTGGCTAGT
ATCTTTGAGCATGATacgttttgttttctcttttgaCTGGCTTTGAAGGT
TATCGTCCTGGTGAGGGGTAGTCTCTACACCAACAACGCTAATTTGATCT
CGCCCAAAAGATTCGTTCTTCTCCTCACTTTCACAAATAATGTCTtgatt
ttgacttaaaattgtGTTCTGAAGTTCCTTACAACTATCGTCAATACGTA
TTAGATTGCTACTAATTTTCCTCTTGATCCGATCAGAGTTTGTATCACTT
TTAGAAGATGATTCTATTGAAGGGATCACCCCCTGGTTAACGGTTTTGGA
AGATTTATCCTCACTCCTAATTCGATCAAACACACCTTTTGATTGTCCAT
TCACTGTAGCTTTAGAGTCCCCAACGCTGATAgattgattttcaaaatct
tgttgATTTTCCTCCGGATATATGCATTCGTTTCGCTCTTTTATAGTTCC
CTGAGGTAACAGTTGTACTTTCTCAGTATTTCCATtcttactttcacttt
cagtaGAATCCTTGTTAGATTCTACAGCAGGATATTCAGTTAATGTGGTA
CATTTACCAGAACTTTCAGAGGTGTTATCTCCTCCTTTGTTAACTTCAGT
ATCTTTATCTCCAAAGAGTTTGGTATCTTTTAATAGCGGCTCAAATTTCA
AGATACGATCTGTTGAAAGTAGTAAATTAAAATCCGGGGGTGGTGCCAGA
ACCATTGTCAATTGATGTTTATCAATATTGTTTGTGATGAAGAAAATTCT
ATGTTCTTATTGAATTgtctaga Coding sequence (CDS) from alignment at scaffold_477:174256..176578 >TCONS_00067952 ID=TCONS_00067952|Name=TCONS_00067952|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_477:174256..176578 (Clytia hemisphaerica)
CTATACACTTCGAAAGCAAGCCAACATCAACAAATAGTCTAGTATAGTAG
TCCTTTTAAGGTTGATAGCCCATTGGAATGGAGTTGCGATTTCATGTTTA
CTTTGAAACAGTGGATCAGCGCCATGTTGAATCAACTCATACGTCGTAAA
TAAATCGTCGTTATAAATGGCGAAATGTAACGGCGTGTATCCGTCAATCG
TTATGATGTTGACATCGACGTCTTTCTGTAAAAGACATTTCACCGTCTCT
AAGTCTTCCCCAAAAACAGCTGAGTGGATTGGTTTCCAACCTGCCTCGTC
AGATAAGCTTACAGACCAGCCTGACTTGATTAAAGCTTTCACGCATTTCA
TACATCCCTTATAAGCTGCTTCATGGATCAAAGAATGGTTATGTTCCAAA
GTGTTTATATCTGTTCGCCGGCGTTTTAACAATAATTTCAATCTCTTGCA
GTCGCCATCTTGAATACTCTTTAACATTTCATCATAAACTCTCTTTCGCA
TTTCGGCCGTATCGCGTTCGAACTTGGAGCGAGAGAAAGGTGATTTTAAC
CCAGGAAAACTTTTCACTTGTGGTGGTGGTGGCTTCAACGCATGCACTGC
ATCTTCTTGCAGGTTTTCTAAATTCAATCTGGTAGCCGACCGGAATGAAA
GATTTCGAAATATACCTTTCCCTGAAGTTCTTCCGCCATTATTTGTCGAA
CTCTCGGCATCATCTAATATATTAACTTCAGGCACGATTACATTTATATA
GCTCTGCGCATGCTCTGTATTTTGTGGTGTTTTCATACTGAATCGTCGAA
ACAGGGATGGCGTGCGTGGTTTAGGCCAATGACTTTCAGTACGTAATCCA
TTGTTATGGTCACCCTCGTGAATGCTATTGCGGGATGAGAAAAAGTTGGA
AAGTCTTTTACGTGAATGATGATTTTCGTCCTCGCTCAGCATTTTACGAT
AGCTCAAATTCGTCATACTCTTCGATAAGAATTGAGGTGATCCGCTACTA
GTCTTTTCAATGGATAAAACCTCAGGACTTGAGTTTCGTTTAATTTCGTA
CCCAATACTACTCATGGATGAATTTCTAGAACCCAGGCTTTCCTGACTAC
TACTGTatcttgaataaaatttcattggTTTATCTTTCGACACCATTGTA
GGGCTGCATCTTTTCCGAGGTTGAATATCTTCACAATCTAAACTATTTTG
AAGTTGAATCGCTGGTGGTTTTATAGTATCCTGGCTAGTATCTTTGAGCA
TGATacgttttgttttctcttttgaCTGGCTTTGAAGGTTATCGTCCTGG
TGAGGGGTAGTCTCTACACCAACAACGCTAATTTGATCTCGCCCAAAAGA
TTCGTTCTTCTCCTCACTTTCACAAATAATGTCTtgattttgacttaaaa
ttgtGTTCTGAAGTTCCTTACAACTATCGTCAATACGTATTAGATTGCTA
CTAATTTTCCTCTTGATCCGATCAGAGTTTGTATCACTTTTAGAAGATGA
TTCTATTGAAGGGATCACCCCCTGGTTAACGGTTTTGGAAGATTTATCCT
CACTCCTAATTCGATCAAACACACCTTTTGATTGTCCATTCACTGTAGCT
TTAGAGTCCCCAACGCTGATAgattgattttcaaaatcttgttgATTTTC
CTCCGGATATATGCATTCGTTTCGCTCTTTTATAGTTCCCTGAGGTAACA
GTTGTACTTTCTCAGTATTTCCATtcttactttcactttcagtaGAATCC
TTGTTAGATTCTACAGCAGGATATTCAGTTAATGTGGTACATTTACCAGA
ACTTTCAGAGGTGTTATCTCCTCCTTTGTTAACTTCAGTATCTTTATCTC
CAAAGAGTTTGGTATCTTTTAATAGCGGCTCAAATTTCAAGATACGATCT
GTTGAAAGTAGTAAATTAAAATCCGGGGGTGGTGCCAGAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067952-exon-scaffold_477-1491911889:174256..176578 | TCONS_00067952-exon-scaffold_477-1491911889:174256..176578 | Clytia hemisphaerica | exon |
| TCONS_00067952-exon-scaffold_477-1510915933:174256..176578 | TCONS_00067952-exon-scaffold_477-1510915933:174256..176578 | Clytia hemisphaerica | exon |
| TCONS_00067952-exon-scaffold_477-1575043694:174256..176578 | TCONS_00067952-exon-scaffold_477-1575043694:174256..176578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:174256..176578 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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