TCONS_00067942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067942
Unique NameTCONS_00067942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067942 ID=TCONS_00067942|Name=TCONS_00067942|organism=Clytia hemisphaerica|type=transcript|length=922bp
NNGTCTGAATAGTTATTGCTCTGTTCTTGCCCTCTGAACGCGTTCTTCAA
GGATTGCTTTAAAAGCAACACGATTTTCAAATGAGTACCAGTTGTCAATG
TAGTATTTGCACTGATCAATTAAGTCTGAGTCATAATGCTGATGAGTACG
TTGGAAATTCACTTTTCCAGATAAAATGTCCGTTATGTTCAGGTTGTTGT
TGATTATAACCTGTTTCGACTTAGATATGAAGCTCGAGTTACACGTGCGA
ATGTATAGCATCTTTACATGTGTACTGTCTTGTGGTTTTGTCAGCCAAGA
GTTGGTTgataagtttcaattttcttctttgGATGATGGAGCTGGCGTCT
GGGATGTCGTATAGTTTAGAGATATAGTTCTTGCTGTATTTAGAAATATT
GAACAGGGACTTGAGGCATGATCTAGCCTGTGCGTTGATACTGTCAAGTT
CTGATTTACTTAGGTCGACAAGTTCAAGACCATACATCAGTTTAGGGATG
ATCAGAGTGTTGAATAGGGAAACTATTGTGTCAGGGTGGCAATGTCGTAC
ACCAGAGGCAATGATTGAGGAAGTGACCGACCATAACTCAGCTATTCGTG
ATGACTTGTGATTTTGTAGAGTTCATTTCGCTTCTTCGCCCATTGAAAGC
CCAGGTGAGATAACGTCTCTTGAGGAGTGATAGCATTGTTGTTTAAGACG
AGACTTGGGGAGGGTAGATTGGACGTTCCTGAGATGACAAATTGGGTTTT
CGATTTGGAATTGTTGAATTTGATGCCGTGTTCACGACCAAAGTTTTCAC
AGTGGGTGACTAGTGTCTGTAGGTGTTTTAGTGATGCGCTCAGCAATACA
ATATCATCGGCATATACAATGATACACGTCTGCAGATCACCAGGTAGTGT
GGTACCAATGTTAAGGGCTTNN
Run BLAST on NCBI

protein sequence of TCONS_00067942-protein

>TCONS_00067942-protein ID=TCONS_00067942-protein|Name=TCONS_00067942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
XALNIGTTLPGDLQTCIIVYADDIVLLSASLKHLQTLVTHCENFGREHGI
KFNNSKSKTQFVISGTSNLPSPSLVLNNNAITPQETLSHLGFQWAKKRNE
LYKITSHHE
Run BLAST on NCBI

transcript from alignment at scaffold_477:33615..34536

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067942 ID=TCONS_00067942|Name=TCONS_00067942|organism=Clytia hemisphaerica|type=transcript|length=922bp|location=Sequence derived from alignment at scaffold_477:33615..34536 (Clytia hemisphaerica)
NNAAGCCCTTAACATTGGTACCACACTACCTGGTGATCTGCAGACGTGTA
TCATTGTATATGCCGATGATATTGTATTGCTGAGCGCATCACTAAAACAC
CTACAGACACTAGTCACCCACTGTGAAAACTTTGGTCGTGAACACGGCAT
CAAATTCAACAATTCCAAATCGAAAACCCAATTTGTCATCTCAGGAACGT
CCAATCTACCCTCCCCAAGTCTCGTCTTAAACAACAATGCTATCACTCCT
CAAGAGACGTTATCTCACCTGGGCTTTCAATGGGCGAAGAAGCGAAATGA
ACTCTACAAAATCACAAGTCATCACGAATAGCTGAGTTATGGTCGGTCAC
TTCCTCAATCATTGCCTCTGGTGTACGACATTGCCACCCTGACACAATAG
TTTCCCTATTCAACACTCTGATCATCCCTAAACTGATGTATGGTCTTGAA
CTTGTCGACCTAAGTAAATCAGAACTTGACAGTATCAACGCACAGGCTAG
ATCATGCCTCAAGTCCCTGTTCAATATTTCTAAATACAGCAAGAACTATA
TCTCTAAACTATACGACATCCCAGACGCCAGCTCCATCATCcaaagaaga
aaattgaaacttatcAACCAACTCTTGGCTGACAAAACCACAAGACAGTA
CACATGTAAAGATGCTATACATTCGCACGTGTAACTCGAGCTTCATATCT
AAGTCGAAACAGGTTATAATCAACAACAACCTGAACATAACGGACATTTT
ATCTGGAAAAGTGAATTTCCAACGTACTCATCAGCATTATGACTCAGACT
TAATTGATCAGTGCAAATACTACATTGACAACTGGTACTCATTTGAAAAT
CGTGTTGCTTTTAAAGCAATCCTTGAAGAACGCGTTCAGAGGGCAAGAAC
AGAGCAATAACTATTCAGACNN

Coding sequence (CDS) from alignment at scaffold_477:33615..34536

>TCONS_00067942 ID=TCONS_00067942|Name=TCONS_00067942|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_477:33615..34536 (Clytia hemisphaerica)
NAAGCCCTTAACATTGGTACCACACTACCTGGTGATCTGCAGACGTGTAT
CATTGTATATGCCGATGATATTGTATTGCTGAGCGCATCACTAAAACACC
TACAGACACTAGTCACCCACTGTGAAAACTTTGGTCGTGAACACGGCATC
AAATTCAACAATTCCAAATCGAAAACCCAATTTGTCATCTCAGGAACGTC
CAATCTACCCTCCCCAAGTCTCGTCTTAAACAACAATGCTATCACTCCTC
AAGAGACGTTATCTCACCTGGGCTTTCAATGGGCGAAGAAGCGAAATGAA
CTCTACAAAATCACAAGTCATCACGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042425XLOC_042425Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067942-proteinTCONS_00067942-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067942-exon-scaffold_477-1491911889:33615..34536TCONS_00067942-exon-scaffold_477-1491911889:33615..34536Clytia hemisphaericaexon
TCONS_00067942-exon-scaffold_477-1510915933:33615..34536TCONS_00067942-exon-scaffold_477-1510915933:33615..34536Clytia hemisphaericaexon
TCONS_00067942-exon-scaffold_477-1575043694:33615..34536TCONS_00067942-exon-scaffold_477-1575043694:33615..34536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:33615..34536 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29855	0.282326	0.154988	0.151632	3.25594	2.79145	3.36471	4.31435	2.19326	3.31686	2.55706	3.5099	2.83392	3.6805	1.2482	1.0323	1.42419	1.19467	2.24181	1.43308	1.83308	2.06491	1.13846	1.43059	1.08553	3.22038	1.91347	1.94655	0.457207	0.521947
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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