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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067939 ID=TCONS_00067939|Name=TCONS_00067939|organism=Clytia hemisphaerica|type=transcript|length=2222bp
TCCTTACAAAATCTCCCTTGGGTTATTTAAACATGAGTTATTTTAAGTGG
TTTTCTAATTTCTTTAGAGCTAGATTTGGCTATTTGGTACATTTCTATAA
ATTTTAGGGAGTGTTCCCTTGACGCTGACCTTATAAAGCAAACTGTTAGA
TAAGGTGACGCCACTAATTCATAGTTTTCATAGAATACATTCACTCACCT
TTTAATTCGACGTCTGCTTGCTCTTTTTGTGCAACCAATTTGCATAGTTG
CTCATACTGCTGTTCAATCAAAGTGGAtaaatatttcgttttttcCGATA
GTTGTGATTTCAAATGTGACACATTCGATAAAATATTTGTCACGTTTACA
gccatatttcattttttattttatcatctGAAATTGTTTATACAAAAAAG
TATGCAAGCAAATAAAAGGATTAAATGGGTAATTAAATAGGTTCAAAGtc
aaatcaaataaattaaGTTATTTCCGACTGAGTTTTCTTCTTaatgaatt
agaaaataatTCTTTATCATCTCAATGCACACAAGAGCCATTGAGCTTTa
accccgaagggctagaggtgaGACTCCTGGCAAAACTTTAACCACTCATT
TCCTATCCAGAATGCCCGTGCGTAGTTTTTAAACAATTGTCAGATTGGAA
CTATAATCTAACGCTAGATTTCAAACAATTAAGTCCTCTAAAACAAAGGA
Agtgctagatacaatccgtcgtcatgattacggcgcgttctatgcgcatt
ttggatgggaaataagtggtttcaatttcttttgccTGANNNNNNNNNNN
NNNNNNGGCTTGAAACTCAATTGCACGAACCATCCGAatcattttcgaat
gttttgatgttgatttcaccCAAAATACaggaagtgaaaaaaaaaaagac
aaaaaagaaagaCACAAACAGAGAGCGAAAAGTTTATCGATGTTTTTCAA
GATGACGATAAAAAAGTTGTAATTTTACTCGTacaatatttctattttta
tcgttcAGTGAGTTTCCTATATTTTCTGAGCCATCAAGTATATTATGGCG
AAAATCTAAACTCGAAAAATACATTTCAAATTGTCCTCGGTACTGTGCAA
ACTTCAAACATTGAactaaattatcaaaataaaataacaaacaaattaAT
ACTTATTAGAAAAAATTTAAGGCGGGAGCAGATCAGATTTATTGTTGTTG
AAGTCTTATCCCGCGAGGTGACCCTCAAGGTATTTGATAGATTGTAGGAC
ATTCATTTCGTAATCACAAATGGGGGGAATTAGTCGataataatgatgat
aaaaataataatcgagaaaaaaaatctaactaTGCTAAGCAAGCGTAGCG
GGCGTGAGACAAACTTCAGCGTCATAGGTGACTATTCTAATGGTCTAAAN
TTAGTCGataataatgatgataaaaataataatcGAGAAAAAGAATCTAA
CTATGCTAAGCAAGCGTAGCGGGCGTGAGACAAACTTCAGCGTCATAGGT
GACTATTCTAATGGTCTAAAAATTTGATCTACCACATACGGTTTTAATTA
TGTGCCCCCATTCGGAtcggaaaaaaaacaaaaaaacaattcaatctGCA
ATTTTATGTACAAGTAGAGGTTTGAAAAGTTGAGAACTTGTCATGAATCT
AACTGTCCCTTCTCCCCTGAAGCGAAAGTCACCTTTTCAGAATTGATTAT
TAATGATTCATATcattatattttgatattacaccGGACCCAGATTTCAA
GAagtttattttaccgaccgaaggcatatattttaaagaaaatcttaGTG
GTATCTACAAGTCGAGTTTATAAAAAGATTAAATATGTAGTGATCTCTAG
TAATTGGAAATGTTATTTTTCGATAAGCTCTCATCGAAACTATTAAATTG
AAAGTCAAGTTAAACCGTTAAAGAGACCTACTTGAACGTTTTGTTCGAAA
ACTTCTTGTAAATGATCAACAAAGTTGattcgttttattttaacaatTGA
ATGTCTCAAAGTCAGTCAAAAGTGATTTAAAATCCAAAATCAAGTTCTTT
TCCTTCTACCATTTTTTCTGCATTTGTTTGGATCTGTTTCCTCTTCTCTT
CTGTAATAGGTGCAATTGCCCTCATCTCTGTATCGATTGCTGATGTTTTC
TTGTGGCAGTTTGCAAGAAACTCCTCGTGGTGCTTGTCTACGATTCTCTT
GATGTCTTCATGAGCTTTTCNN Run BLAST on NCBI transcript from alignment at scaffold_477:6768..8989 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067939 ID=TCONS_00067939|Name=TCONS_00067939|organism=Clytia hemisphaerica|type=transcript|length=2222bp|location=Sequence derived from alignment at scaffold_477:6768..8989 (Clytia hemisphaerica)
NNGAAAAGCTCATGAAGACATCAAGAGAATCGTAGACAAGCACCACGAGG
AGTTTCTTGCAAACTGCCACAAGAAAACATCAGCAATCGATACAGAGATG
AGGGCAATTGCACCTATTACAGAAGAGAAGAGGAAACAGATCCAAACAAA
TGCAGAAAAAATGGTAGAAGGAAAAGAACTTGATTTTGGATTTTAAATCA
CTTTTGACTGACTTTGAGACATTCAattgttaaaataaaacgaatCAACT
TTGTTGATCATTTACAAGAAGTTTTCGAACAAAACGTTCAAGTAGGTCTC
TTTAACGGTTTAACTTGACTTTCAATTTAATAGTTTCGATGAGAGCTTAT
CGAAAAATAACATTTCCAATTACTAGAGATCACTACATATTTAATCTTTT
TATAAACTCGACTTGTAGATACCACtaagattttctttaaaatatatgcc
ttcggtcggtaaaataaactTCTTGAAATCTGGGTCCggtgtaatatcaa
aatataatgATATGAATCATTAATAATCAATTCTGAAAAGGTGACTTTCG
CTTCAGGGGAGAAGGGACAGTTAGATTCATGACAAGTTCTCAACTTTTCA
AACCTCTACTTGTACATAAAATTGCagattgaattgtttttttgtttttt
ttccgaTCCGAATGGGGGCACATAATTAAAACCGTATGTGGTAGATCAAA
TTTTTAGACCATTAGAATAGTCACCTATGACGCTGAAGTTTGTCTCACGC
CCGCTACGCTTGCTTAGCATAGTTAGATTCTTTTTCTCgattattatttt
tatcatcattattatCGACTAANTTTAGACCATTAGAATAGTCACCTATG
ACGCTGAAGTTTGTCTCACGCCCGCTACGCTTGCTTAGCAtagttagatt
ttttttctcgattattatttttatcatcattattatCGACTAATTCCCCC
CATTTGTGATTACGAAATGAATGTCCTACAATCTATCAAATACCTTGAGG
GTCACCTCGCGGGATAAGACTTCAACAACAATAAATCTGATCTGCTCCCG
CCTTAAATTTTTTCTAATAAGTATtaatttgtttgttattttattttgat
aatttagtTCAATGTTTGAAGTTTGCACAGTACCGAGGACAATTTGAAAT
GTATTTTTCGAGTTTAGATTTTCGCCATAATATACTTGATGGCTCAGAAA
ATATAGGAAACTCACTgaacgataaaaatagaaatattgtACGAGTAAAA
TTACAACTTTTTTATCGTCATCTTGAAAAACATCGATAAACTTTTCGCTC
TCTGTTTGTGtctttcttttttgtctttttttttttcacttcctGTATTT
TGggtgaaatcaacatcaaaacattcgaaaatgatTCGGATGGTTCGTGC
AATTGAGTTTCAAGCCNNNNNNNNNNNNNNNNNTCAggcaaaagaaattg
aaaccacttatttcccatccaaaatgcgcatagaacgcgccgtaatcatg
acgacggattgtatctagcacTTCCTTTGTTTTAGAGGACTTAATTGTTT
GAAATCTAGCGTTAGATTATAGTTCCAATCTGACAATTGTTTAAAAACTA
CGCACGGGCATTCTGGATAGGAAATGAGTGGTTAAAGTTTTGCCAGGAGT
CtcacctctagcccttcggggttAAAGCTCAATGGCTCTTGTGTGCATTG
AGATGATAAAGAattattttctaattcattAAGAAGAAAACTCAGTCGGA
AATAACttaatttatttgatttgaCTTTGAACCTATTTAATTACCCATTT
AATCCTTTTATTTGCTTGCATACTTTTTTGTATAAACAATTTCagatgat
aaaataaaaaatgaaatatggcTGTAAACGTGACAAATATTTTATCGAAT
GTGTCACATTTGAAATCACAACTATCGgaaaaaacgaaatatttaTCCAC
TTTGATTGAACAGCAGTATGAGCAACTATGCAAATTGGTTGCACAAAAAG
AGCAAGCAGACGTCGAATTAAAAGGTGAGTGAATGTATTCTATGAAAACT
ATGAATTAGTGGCGTCACCTTATCTAACAGTTTGCTTTATAAGGTCAGCG
TCAAGGGAACACTCCCTAAAATTTATAGAAATGTACCAAATAGCCAAATC
TAGCTCTAAAGAAATTAGAAAACCACTTAAAATAACTCATGTTTAAATAA
CCCAAGGGAGATTTTGTAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067939-exon-scaffold_477-1491911889:6768..8989 | TCONS_00067939-exon-scaffold_477-1491911889:6768..8989 | Clytia hemisphaerica | exon |
| TCONS_00067939-exon-scaffold_477-1510915933:6768..8989 | TCONS_00067939-exon-scaffold_477-1510915933:6768..8989 | Clytia hemisphaerica | exon |
| TCONS_00067939-exon-scaffold_477-1575043694:6768..8989 | TCONS_00067939-exon-scaffold_477-1575043694:6768..8989 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:6768..8989 . |
Blast
The following BLAST results are available for this feature:
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