TCONS_00067926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067926
Unique NameTCONS_00067926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067926 ID=TCONS_00067926|Name=TCONS_00067926|organism=Clytia hemisphaerica|type=transcript|length=554bp
TAACGATGATAAAAAAGTCGTCCCCATTGGAGTCACGAACGACACGACGG
TCCTCAAGAAAATCAATGAAACTattgaagaaaacaaaaagattgtcgag
gaaaatgaaaaagcgaaggaaaatttgaaaaccacTGTTGCACCTACTAC
TGGCCCAGGAACAACCACAGATAAGATTGAAGAGACGAATAGTGTTTGCA
AAGCAGTAGCTGAAGGAGTGTTGTGTGAGAATGGAAAATGTATTGATACA
GATGATGGCAGTTTCAGATGTGAATGTAACGAAGGTTTTGAAGTCGTCAA
AGTTGCCGGGGGTGACAGATGTAAAGcCAAGGCGACATTCGAGTTGTGTT
ATGTTGATGGCTTGTGTGAAGATGGTAGCCTCGGTAACATCACCAAAGCC
TCTTGTTGTTGTGAAAGTCCTGAGCGAGCCTTTGGCAATTGCAATGGTTG
TCCTGTGTTGGGAGAACCCGCTTACAGAGCTTTAGTTTGTAACGATGATA
AAAAAGTCGTCCCCGTTGGAGTCACGAACGACACGACGGTCCtcaagaaa
atca
Run BLAST on NCBI

transcript from alignment at scaffold_477:447259..449459-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067926 ID=TCONS_00067926|Name=TCONS_00067926|organism=Clytia hemisphaerica|type=transcript|length=2201bp|location=Sequence derived from alignment at scaffold_477:447259..449459- (Clytia hemisphaerica)
TAACGATGATAAAAAAGTCGTCCCCATTGGAGTCACGAACGACACGACGG
TCCTCAAGAAAATCAATGAAACTATTGAAGAAAACAAAAAGATTGTCGAG
GAAAATGAAAAAGCGAAGGAAAATTTGAAAACCACTGTTGCACCTACTAC
TGGCCCAGGTAAACGACGTTTCTCATGAAGGCCACTGAAAATGTCCATTT
GTTTTTTGCTCATTATTATCCTTTAAAGAAATCAAAAGCTGCTCTCAAAA
CTATTGAAAAAAATGTTCTTTTCTACTCAGGATCAAAATTTAGTAGCTGT
AAATTTGCTTTAAGATTGTACAGAATTGAAAGACCAAGAAGGGTAGCTGT
TTGCCATATAAAACTTTCCAGGTCTCAGTATACACGCTTTTTTATTTAAA
AGAACAATTTTTTAAGAACACTAGCCTCAGATATAGGCCCTCAAAATAAT
AGCTCTAATGTTTGTAACAACAGAAATTTAAGAACATCTCAAGCTCGCCT
AAAATTTGCTGGTTCTTATAAAAAAAGCGTGTATTATATATTAGTGTCCC
TGTATTTTTGTTTCTTTATAAAGACAAAGTTCACGTATTTTGAATATGAT
ATGCAACACTGGAGAGTCTTCTGAGAATTTTCAAAAATTTCCACTCAATA
CGTCACTTTTTCTATTGTTTAAGTGACGTATTGGGTGGAAAATTTTGAAA
ATTCTCAGAAGACTCTCCAGTGGTGCATATCATGAATATGATATTTTCGG
CGGTGTTAAGAGTAAGGTTTATGTTTATTTTCAGGAACAACCACAGATAA
GATTGAAGAGACGAATAGTGTTTGCAAAGCAGTAGCTGAAGGAGTGTTGT
GTGAGAATGGAAAATGTATTGATACAGATGATGGCAGTTTCAGATGTGAA
TGTAACGAAGGTTTTGAAGTCGTCAAAGTTGCCGGGGGTGACAGATGTAA
AGGTAAGATTGCATCGTCAATAAAANTTTTGAAAATTCTTAGAAGACTCT
CCAGTGGTGCACATCATGAATTTTATATTTTCGGCGGTGTTAAGAGTAAG
GTTCATGTCGATTTTCAGGAACAACCACAGATAAGATTGAAGAGACGAAT
AGTGTTTGCAAAGCAGTAGCTGAAGGAGTGTTGTGTGAGAATGGAAAATG
TATTGATACAGATGATGGCAGTTTCAGATGTGAATGTAACGAAGGTTTTG
AAGTCGTCAAAGTTGCCGGGGGTGACAGATGTAAAGGTAAGGTTGCATTG
TCAATAAAACGCACTTTTTAAACCCTCACAGACATGGTGGAGTTAACTTT
TTGACTAAGACTGCATATCTTTTTATGTCCAACTCATGGTTGGATTGTCC
AAATTCTAACTCCACTTTGCAAAGGCAATCAGAAACAGTTACAACCGTTG
TTAATAACAGACACCCAATTTCTGTTGTTTTCTCTGTTCTTCCTTTATAA
ATTTCAGTTTGACGTGAGTTATGTAACTTTGGCCATTACGTAATAAAACA
TTCGATTACATAAGCAATCGACTCTACAAAGTCTGCCGTAAATGGCGGAG
TGTCGCTAGCTTACGTAAATTTTAGCGAAACCTGAAAAACCTTGAATATA
TGTTAAACCCAATCCTGAAATAACCTCTAATATGTTTTTTTACTTTTTAC
AGCCAAGGCGACATTCGAGTTGTGTTATGTTGATGGCTTGTGTGAAGATG
GTAGCCTCGGTAACATCACCAAAGCCTCTTGTTGTTGTGAAAGTCCTGAG
CGAGCCTTTGGCAATTGCAATGGTTGTCCTGTGTTGGGAGAACGTAAGCT
TTTAACCTATTAATATCAATAAGTGGTAAACGTTGAAGTGACTTTCCCTT
GAAATTTTTTAAAGACTATATTTCGAACAGATCACTTTCGATCTACTGTT
AAACTATCCCTTTAAAAGAGAAAAAAGAGACTTTCAGAGACTTCGGTAGA
CTGAGCTGACATGCAACGTCAAAACATCGCTAATCTTAACTCGCATAACA
CCCATGTGTCATGTTAGATAAACTTCGAGACAATGTTGTGTGCAAAGTGG
GACTAAACAAGACTGTTGATCATTTAGTTACTACCTAATTAATACTTCAA
TGTTATCTTTACAGCCGCTTACAGAGCTTTAGTTTGTAACGATGATAAAA
AAGTCGTCCCCGTTGGAGTCACGAACGACACGACGGTCCTCAAGAAAATC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042417XLOC_042417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067926-exon-scaffold_477-1575043694:449302..449459TCONS_00067926-exon-scaffold_477-1575043694:449302..449459Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1575043694:448550..448675TCONS_00067926-exon-scaffold_477-1575043694:448550..448675Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1575043694:448224..448265TCONS_00067926-exon-scaffold_477-1575043694:448224..448265Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1575043694:447667..447807TCONS_00067926-exon-scaffold_477-1575043694:447667..447807Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1575043694:447259..447345TCONS_00067926-exon-scaffold_477-1575043694:447259..447345Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1510915933:449302..449459TCONS_00067926-exon-scaffold_477-1510915933:449302..449459Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1510915933:448550..448675TCONS_00067926-exon-scaffold_477-1510915933:448550..448675Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1510915933:448224..448265TCONS_00067926-exon-scaffold_477-1510915933:448224..448265Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1510915933:447667..447807TCONS_00067926-exon-scaffold_477-1510915933:447667..447807Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1510915933:447259..447345TCONS_00067926-exon-scaffold_477-1510915933:447259..447345Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1491911889:449302..449459TCONS_00067926-exon-scaffold_477-1491911889:449302..449459Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1491911889:448550..448675TCONS_00067926-exon-scaffold_477-1491911889:448550..448675Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1491911889:448224..448265TCONS_00067926-exon-scaffold_477-1491911889:448224..448265Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1491911889:447667..447807TCONS_00067926-exon-scaffold_477-1491911889:447667..447807Clytia hemisphaericaexon
TCONS_00067926-exon-scaffold_477-1491911889:447259..447345TCONS_00067926-exon-scaffold_477-1491911889:447259..447345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:447259..449459 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.720749	0	0.88295	0.155702	0.384865	0	0.364447	0.187342	0.346625	0.374472	0.776848	0	0.247873	1.56552	0.319036	0.431214	20.7985	3.94907	0	0.404528	97.8452	75.5226	36.5041	101.275	129.455	122.266	2.76419	1.79432	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top