TCONS_00067919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067919
Unique NameTCONS_00067919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067919 ID=TCONS_00067919|Name=TCONS_00067919|organism=Clytia hemisphaerica|type=transcript|length=2555bp
ATCAATATCTCCAACTTCAAGTCAGACATCAATATCTTCGACATCAAGTC
AGACATCAATATCTTCGACATCAAGTCAGATGTCAATATCTCCGACATCA
AGTCATACATCAATATCTTCGACATCATCAAGTCAGACATCAATTCAGGC
ATCAATATCTTCGACATCAAGTCAGATGTCAATATCTCTGAGATCAAGTC
AGTTATCAATATCTTCGACATCAAGTCAGACATCAATTCAGGCATCAGTA
TCTTCGACATCAAGTCTGATGTCAATATCTCCGACATCAATTCAAGCATC
AATATCTTCAACATCAAGTCAGACATCAATATCTCCGACACCAAGTCAGA
CATTGACATCTTTAACGTCAAATCATATGTCAACATCTCCTTTATCAATA
CAGACATCAAGTCAGATATTGACATCTTCGACGTCAAGTCAGGCATCAAT
ATCTCCGACATCAATACAGCTATCAACATCTCCGACACTAAGTCAGACGT
CAATATCTTCGACATCAAGTCAGATATTGACATCTTCGACGTCAAGTCAG
GCATCAATATCTCCGACATCAATACAGCTATCAACATCTCCGACACTAAG
TCAGACGTCAATATCTTCGACATTAAGTCAGACATCAATATTATTTTCTG
ATTCTGTATTATCGACGACAATAACTGAAGTAGAAACTTTAAACAGAGAA
TCTTCTCAAGTATTTGCAACTGCTCCAAAATCACAGAAGATGGAACCAGA
GATACAAGGATCGGGCTCTTCATTTAGTAACACCGACTCAATATCAACAT
TCAGTTGGCCACAAGTTACACTGTCATCAATGATATCTTCAGAGAATTTT
ACTCTAGAAATGGTTACCACAACAGATGCAGATCCAACAGATCTCTTATC
CACGACTGGAGTACAAGAAACAAAAGCAATGTCGAGTCCAGTACCCAATA
TCAATGATTCATCACTACCAATGACAACAGTGAATTTAATACCATCGAGT
TTACCAGAAACACTAGTAAACCAACCTCAATCAATACTGTCCACCCAGTC
CTTATCACCAACACCCATTCTACAGGAGCATACGCCCTCTTTTCAATCGT
CCATCCGATTCAATAGCGCCGTACCCAATAACTATTCCCAACTCCAAACA
AACCAGACTATATATACACATTCAAGCATATCAGGgacttcttttcttct
ttcactTTTCACATCCGTCAACCCAAACCAATTCACATGTTTGTGCCAAC
CTTCAGTTTCAAGCTCACCATCGCAAACTATATTCTCTGGTATTAACAAT
CAAAATTCCTCTACACTTGAGAACAACTCAACCTCTCCTCAATTAACAGG
CCCTGTCATTTCCTCATTGAACTCCATTCCTATCACCTCCAACTCCATTC
CTATCACCTCCAACTCCACTCCTATCACCTCCAACTCCACTCCTATCACT
TCCAACTCCATTCCTATCACCTCCAACCACCTGCAAACATCTGAGTCATC
TTcacattttaaagaaaataaccaAAACACAAGCATCTTTTCTTCTCATT
CTTTCTTAACTTCTTCCGAATCAAGGAAGTATTCATCGCAAACTATATCC
TCTGGTACTAACAATCAAAACTCTTCTACTCTCGAGAACAACTCAACCTC
TCCTCAATTAACAAGCCCTGCTATTTCCTCCATGAACTCCATTCCTATCA
CTTCCAACTCCATTCCTATCACCTCCGACCACCTGCAAACATCTGAGTCA
TTCTCACATGTTACAGAAAATAACCAACACACAGCCATCTTTTCCTCTCA
TTCTTTCTTAACTTCTTTTGAATCAAAGAAGTATTCATGCTGGTGTTCTT
CTCCTGCACCCATCGCAACACAAACTGTTCAATATTCACAATCTTTTCAA
ACCACGACTCACACCCCAACGGCTGACCAAACCAATATACATACCCTTTC
AACCTCTCAAACCACTAACCGCCCACCAGTCGCCCACCAGACCACTATCT
ATACTTCAACTCAAACCCCAGAAACACCCCAGACCACTACTCACAACCAA
CCAGCTGCCCAATCCATTAGTCCTTCCTCTTCTATTTCCTCTTCAAGCAA
CAATCATCAAAATCAAGCAACAACTACACTTTCATATCTAGCAACTACCA
ACCTCGTCACAAATCAACCATCGAACCCATCTCTTTCACCAGACTCCAAC
TCTATTGTTCCTACACGACCTTCTTCATCCACCCAACTTCCATTTACTAC
CAGTGTACGCTCCCCATCGCTGCCCTACCAACCCTCCATCACTCCATCCT
TCTCTTCATCTTCAAGTGAAGCACTACAGAGTACACCCGCCCTTCCACAG
ACCCTTTCCACCAATCAGCTCTCTACCTCCATCATGTACCCTCTTATTAC
TTCCACACCACAATTTATCTCAATAATGACTCTCTCCTCTCTTTCCCTTT
CTTCAGCACTGATTAAAGCGACAACTTCTTCACTCCCAAACTCTTTTCTT
ACTTTTCTCCTAATGCTCCCTTCCACTACATCTGCAGCTTTTCTTCAAGA
TGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_477:421284..423973-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067919 ID=TCONS_00067919|Name=TCONS_00067919|organism=Clytia hemisphaerica|type=transcript|length=2690bp|location=Sequence derived from alignment at scaffold_477:421284..423973- (Clytia hemisphaerica)
ATCAATATCTCCAACTTCAAGTCAGACATCAATATCTTCGACATCAAGTC
AGACATCAATATCTTCGACATCAAGTCAGATGTCAATATCTCCGACATCA
AGTCAGATGTCGGTGTCTCCGAGATCAAGTCAGTTATCAATATCTTCGAC
ATTAAGTCAGATGTCAATATCTCCGACATCAAGTCAGATGTCGATATCAC
AGATATCAAGTCAGACATCAATATCTCCAACATCAAGTCATACATCAATA
TCTTCGACATCATCAAGTCAGACATCAATTCAGGCATCAATATCTTCGAC
ATCAAGTCAGATGTCAATATCTCTGAGATCAAGTCAGTTATCAATATCTT
CGACATCAAGTCAGACATCAATTCAGGCATCAGTATCTTCGACATCAAGT
CTGATGTCAATATCTCCGACATCAATTCAAGCATCAATATCTTCAACATC
AAGTCAGACATCAATATCTCCGACACCAAGTCAGACATTGACATCTTTAA
CGTCAAATCATATGTCAACATCTCCTTTATCAATACAGACATCAAGTCAG
ATATTGACATCTTCGACGTCAAGTCAGGCATCAATATCTCCGACATCAAT
ACAGCTATCAACATCTCCGACACTAAGTCAGACGTCAATATCTTCGACAT
CAAGTCAGATATTGACATCTTCGACGTCAAGTCAGGCATCAATATCTCCG
ACATCAATACAGCTATCAACATCTCCGACACTAAGTCAGACGTCAATATC
TTCGACATTAAGTCAGACATCAATATTATTTTCTGATTCTGTATTATCGA
CGACAATAACTGAAGTAGAAACTTTAAACAGAGAATCTTCTCAAGTATTT
GCAACTGCTCCAAAATCACAGAAGATGGAACCAGAGATACAAGGATCGGG
CTCTTCATTTAGTAACACCGACTCAATATCAACATTCAGTTGGCCACAAG
TTACACTGTCATCAATGATATCTTCAGAGAATTTTACTCTAGAAATGGTT
ACCACAACAGATGCAGATCCAACAGATCTCTTATCCACGACTGGAGTACA
AGAAACAAAAGCAATGTCGAGTCCAGTACCCAATATCAATGATTCATCAC
TACCAATGACAACAGTGAATTTAATACCATCGAGTTTACCAGAAACACTA
GTAAACCAACCTCAATCAATACTGTCCACCCAGTCCTTATCACCAACACC
CATTCTACAGGAGCATACGCCCTCTTTTCAATCGTCCATCCGATTCAATA
GCGCCGTACCCAATAACTATTCCCAACTCCAAACAAACCAGACTATATAT
ACACATTCAAGCATATCAGGGACTTCTTTTCTTCTTTCACTTTTCACATC
CGTCAACCCAAACCAATTCACATGTTTGTGCCAACCTTCAGTTTCAAGCT
CACCATCGCAAACTATATTCTCTGGTATTAACAATCAAAATTCCTCTACA
CTTGAGAACAACTCAACCTCTCCTCAATTAACAGGCCCTGTCATTTCCTC
ATTGAACTCCATTCCTATCACCTCCAACTCCATTCCTATCACCTCCAACT
CCACTCCTATCACCTCCAACTCCACTCCTATCACTTCCAACTCCATTCCT
ATCACCTCCAACCACCTGCAAACATCTGAGTCATCTTCACATTTTAAAGA
AAATAACCAAAACACAAGCATCTTTTCTTCTCATTCTTTCTTAACTTCTT
CCGAATCAAGGAAGTATTCATCGCAAACTATATCCTCTGGTACTAACAAT
CAAAACTCTTCTACTCTCGAGAACAACTCAACCTCTCCTCAATTAACAAG
CCCTGCTATTTCCTCCATGAACTCCATTCCTATCACTTCCAACTCCATTC
CTATCACCTCCGACCACCTGCAAACATCTGAGTCATTCTCACATGTTACA
GAAAATAACCAACACACAGCCATCTTTTCCTCTCATTCTTTCTTAACTTC
TTTTGAATCAAAGAAGTATTCATGCTGGTGTTCTTCTCCTGCACCCATCG
CAACACAAACTGTTCAATATTCACAATCTTTTCAAACCACGACTCACACC
CCAACGGCTGACCAAACCAATATACATACCCTTTCAACCTCTCAAACCAC
TAACCGCCCACCAGTCGCCCACCAGACCACTATCTATACTTCAACTCAAA
CCCCAGAAACACCCCAGACCACTACTCACAACCAACCAGCTGCCCAATCC
ATTAGTCCTTCCTCTTCTATTTCCTCTTCAAGCAACAATCATCAAAATCA
AGCAACAACTACACTTTCATATCTAGCAACTACCAACCTCGTCACAAATC
AACCATCGAACCCATCTCTTTCACCAGACTCCAACTCTATTGTTCCTACA
CGACCTTCTTCATCCACCCAACTTCCATTTACTACCAGTGTACGCTCCCC
ATCGCTGCCCTACCAACCCTCCATCACTCCATCCTTCTCTTCATCTTCAA
GTGAAGCACTACAGAGTACACCCGCCCTTCCACAGACCCTTTCCACCAAT
CAGCTCTCTACCTCCATCATGTACCCTCTTATTACTTCCACACCACAATT
TATCTCAATAATGACTCTCTCCTCTCTTTCCCTTTCTTCAGCACTGATTA
AAGCGACAACTTCTTCACTCCCAAACTCTTTTCTTACTTTTCTCCTAATG
CTCCCTTCCACTACATCTGCAGCTTTTCTTCAAGATGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042415XLOC_042415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067919-exon-scaffold_477-1575043694:423878..423973TCONS_00067919-exon-scaffold_477-1575043694:423878..423973Clytia hemisphaericaexon
TCONS_00067919-exon-scaffold_477-1575043694:421284..423742TCONS_00067919-exon-scaffold_477-1575043694:421284..423742Clytia hemisphaericaexon
TCONS_00067919-exon-scaffold_477-1510915933:423878..423973TCONS_00067919-exon-scaffold_477-1510915933:423878..423973Clytia hemisphaericaexon
TCONS_00067919-exon-scaffold_477-1510915933:421284..423742TCONS_00067919-exon-scaffold_477-1510915933:421284..423742Clytia hemisphaericaexon
TCONS_00067919-exon-scaffold_477-1491911889:423878..423973TCONS_00067919-exon-scaffold_477-1491911889:423878..423973Clytia hemisphaericaexon
TCONS_00067919-exon-scaffold_477-1491911889:421284..423742TCONS_00067919-exon-scaffold_477-1491911889:421284..423742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:421284..423973 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0737348	0	0	0	0	0	0	0	0	0	0	0.893326	0.644836	0	0	0	0	0.612457	2.84257	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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