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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067918 ID=TCONS_00067918|Name=TCONS_00067918|organism=Clytia hemisphaerica|type=transcript|length=718bp
GAATGGATCGCAGACTTAAATGCAACACAATCTATTGCTTATCCAAATAC
TACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCTTATCCAA
ATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCTTAT
CCAAATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGC
TTATCCAAATGCTACAGAATGGCTCACAGACCTAAATGCAACACAATCCA
TTGCTTATTCCAATGCTACGGTATGGATCGGGGAAACATTGAATGGAACC
AACAGCTCAATCAACCATAATCAGCAGAACCACACTACAACAGTACAAGG
GTCATCTATTTCTCCAAGTAGTAGCTTTACAACAAACATCGAAAGTACTT
CAATTTCAACTACgtcaacaacaacgaccaccacgAAAAATTCTACGACC
ACCACACAAAAACCTACGACCACCACGGAAAAACCAACGACTACCACGGA
AAATCCTACGACCACCACACAAAAACCTACGACCACCACGGAAAAACCTA
CGACCACAACAGAAAAAACTACGACCACCACGGAAAAACCTACAACCACC
ACTACTccaacgacaacgaccaccactACGACAACGGAGGAGCCCTACAC
CGGCCCAGTTACAGATTTAGCAAATGTTGGTTCGTGGACCACCTGGCCGA
TCTGTACTCCATCGTGTG Run BLAST on NCBI protein sequence of TCONS_00067918-protein >TCONS_00067918-protein ID=TCONS_00067918-protein|Name=TCONS_00067918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
EWIADLNATQSIAYPNTTEWLTDLNATQSIAYPNTTEWLTDLNATQSIAY
PNTTEWLTDLNATQSIAYPNATEWLTDLNATQSIAYSNATVWIGETLNGT
NSSINHNQQNHTTTVQGSSISPSSSFTTNIESTSISTTSTTTTTTKNSTT
TTQKPTTTTEKPTTTTENPTTTTQKPTTTTEKPTTTTEKTTTTTEKPTTT
TTPTTTTTTTTTEEPYTGPVTDLANVGSWTTWPICTPSC Run BLAST on NCBI transcript from alignment at scaffold_477:419070..420222- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067918 ID=TCONS_00067918|Name=TCONS_00067918|organism=Clytia hemisphaerica|type=transcript|length=1153bp|location=Sequence derived from alignment at scaffold_477:419070..420222- (Clytia hemisphaerica)
GAATGGATCGCAGACTTAAATGCAACACAATCTATTGCTTATCCAAATAC
TACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCTTATCCAA
ATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCTTAT
CCAAATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGC
TTATCCAAATGCTACAGAATGGCTCACAGACCTAAATGCAACACAATCCA
TTGCTTATTCCAATGCTACGGTATGGATCGGGGAAACATTGAATGGAACC
AACAGCTCAATCAACCATAATCAGCAGAACCACACTACAACAGTACAAGG
GTCATCTATTTCTCCAAGTAGTAGCTTTACAACAAACATCGAAAGTACTT
CAATTTCAACTACGTCAACAACAACGACCACCACGAAAAATTCTACGACC
ACCACACAAAAACCTACGACCACCACGGAAAAACCAACGACTACCACGGA
AAATCCTACGACCACCACACAAAAACCTACGACCACCACGGAAAAACCTA
CGACCACAACAGAAAAAACTACGACCACCACGGAAAAACCTACAACCACC
ACTACTCCAACGACAACGACCACCACTACGACAACGGAGGAGCCCTACAC
CGGCCCAGTTACAGGTATGTCATATCTATTTCAGTTTCTTGAGCAATTTC
CCTCTACGGCTCTGAGTAAAATATCAAATCCTTGACAAATTAAAAAGCCC
ATAAAATCTTTAAACAACCAGTCCAGGATAACTGAAGGTCAGAAGCACAG
GTCAACGCAGAATCACATTTCATCTCTTACAATCTCAAGAAAAGATTGAC
GCTGTGGTATAGTGGTCATTGACCTTGATTGCTGCACAGACGACTGAGGT
TCGATTCCCACTCGCAGCGGTTCACTTGACAAGTCAATGAACCTTCGCCC
GGGTCAACCTATGCCATGTGAGGGGAATTGGGTAGTAAGCCTAAGGTGCT
GACGGGGTGCTTATTGAAAGCGTCTATAGTTGCGAAAAAAAGGCCTCAAA
GCCTCCTGCAACTCAACCAAATAGAAATAGACTAATTTTTCTTTAATAGA
TTTAGCAAATGTTGGTTCGTGGACCACCTGGCCGATCTGTACTCCATCGT
GTG Coding sequence (CDS) from alignment at scaffold_477:419070..420222- >TCONS_00067918 ID=TCONS_00067918|Name=TCONS_00067918|organism=Clytia hemisphaerica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_477:419070..420222- (Clytia hemisphaerica)
ATTTAGCAAATGTTGGTTCGTGGACCACCTGGCCGATCTGTACTCCATCG
TGTGAATGGATCGCAGACTTAAATGCAACACAATCTATTGCTTATCCAAA
TACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCTTATC
CAAATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCT
TATCCAAATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTAT
TGCTTATCCAAATGCTACAGAATGGCTCACAGACCTAAATGCAACACAAT
CCATTGCTTATTCCAATGCTACGGTATGGATCGGGGAAACATTGAATGGA
ACCAACAGCTCAATCAACCATAATCAGCAGAACCACACTACAACAGTACA
AGGGTCATCTATTTCTCCAAGTAGTAGCTTTACAACAAACATCGAAAGTA
CTTCAATTTCAACTACGTCAACAACAACGACCACCACGAAAAATTCTACG
ACCACCACACAAAAACCTACGACCACCACGGAAAAACCAACGACTACCAC
GGAAAATCCTACGACCACCACACAAAAACCTACGACCACCACGGAAAAAC
CTACGACCACAACAGAAAAAACTACGACCACCACGGAAAAACCTACAACC
ACCACTACTCCAACGACAACGACCACCACTACGACAACGGAGGAGCCCTA
CACCGGCCCAGTTACAGATTTAGCAAATGTTGGTTCGTGGACCACCTGGC
CGATCTGTACTCCATCGTGTGAATGGATCGCAGACTTAAATGCAACACAA
TCTATTGCTTATCCAAATACTACAGAATGGCTCACAGACCTAAATGCAAC
ACAATCTATTGCTTATCCAAATACTACAGAATGGCTCACAGACCTAAATG
CAACACAATCTATTGCTTATCCAAATACTACAGAATGGCTCACAGACCTA
AATGCAACACAATCTATTGCTTATCCAAATGCTACAGAATGGCTCACAGA
CCTAAATGCAACACAATCCATTGCTTATTCCAATGCTACGGTATGGATCG
GGGAAACATTGAATGGAACCAACAGCTCAATCAACCATAATCAGCAGAAC
CACACTACAACAGTACAAGGGTCATCTATTTCTCCAAGTAGTAGCTTTAC
AACAAACATCGAAAGTACTTCAATTTCAACTACGTCAACAACAACGACCA
CCACGAAAAATTCTACGACCACCACACAAAAACCTACGACCACCACGGAA
AAACCAACGACTACCACGGAAAATCCTACGACCACCACACAAAAACCTAC
GACCACCACGGAAAAACCTACGACCACAACAGAAAAAACTACGACCACCA
CGGAAAAACCTACAACCACCACTACTCCAACGACAACGACCACCACTACG
ACAACGGAGGAGCCCTACACCGGCCCAGTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067918-exon-scaffold_477-1575043694:419559..420222 | TCONS_00067918-exon-scaffold_477-1575043694:419559..420222 | Clytia hemisphaerica | exon |
| TCONS_00067918-exon-scaffold_477-1575043694:419070..419123 | TCONS_00067918-exon-scaffold_477-1575043694:419070..419123 | Clytia hemisphaerica | exon |
| TCONS_00067918-exon-scaffold_477-1510915933:419559..420222 | TCONS_00067918-exon-scaffold_477-1510915933:419559..420222 | Clytia hemisphaerica | exon |
| TCONS_00067918-exon-scaffold_477-1510915933:419070..419123 | TCONS_00067918-exon-scaffold_477-1510915933:419070..419123 | Clytia hemisphaerica | exon |
| TCONS_00067918-exon-scaffold_477-1491911889:419559..420222 | TCONS_00067918-exon-scaffold_477-1491911889:419559..420222 | Clytia hemisphaerica | exon |
| TCONS_00067918-exon-scaffold_477-1491911889:419070..419123 | TCONS_00067918-exon-scaffold_477-1491911889:419070..419123 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:419070..420222 - |
Blast
The following BLAST results are available for this feature:
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