TCONS_00067915 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067915
Unique Name	TCONS_00067915
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	883

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_477:413403..419008-

transcript sequence

>TCONS_00067915 ID=TCONS_00067915|Name=TCONS_00067915|organism=Clytia hemisphaerica|type=transcript|length=883bp
AACTTGTGGTACAGATCTCGTGGCGACTTATGAGACAACACAATGTCTAG
ATATAAGTAATTGCTTTGAGAGTGGATATTACATGGGTGGTCAAGGAGAA
TCATGTGATATTTTCTGTTCCTCAAGAGGTATGGTCTGTTCAACTGAAAT
AAAAACGGGGAATTCACCAACTATATTTCAAAGTGTTTTACCAAACTACA
AGATGAGCACCAATCAACCAACGTGGAATAAACCTTACTCTCCCCATTGC
GATGAACAAAACCATTGTTATGGATATTCGAATGTACCAGACGAAGTATC
GTGTGAAGTGGCACCGGTGGCTCAACAGCGCCGCTTTTGTCATTGCATGA
ATAGGGCTGACCTTGGATATGCAGACTGGGCGCCATGGTCACACTGTTCA
CAAACGTGTGAAGGTGTAAAACGAAGAACGAGAGAATGTTTAGGATTGCA
ATGCGATGGAGACAGTGAAGAAATGAATAATTGTGGAACGGAACGATGTC
CTATTCATGGCGGCTTTTCCGATTGGTCGTCATGGTCACAATGTGACGTC
ACATGTGGTGGTGGCACCACACACCGCTCACGCCAGTGCAATAACCCAAC
ACCACGATACGGTGGCAATGGTTGTATTGGATCTGTAGAAGAAGATGATA
CGTGCAATAATCATTTCTGTCCAGTGGATGCAGTTTGGTTAGAATGGTCT
GATTGGTCATTTTGTAACAAAGCATGCGGTAATGGTACTGGCATGAGAAC
GAGGCAATGTAAACATGGTATGTATGGTGGTAGAAGAGATTGTATTGGGA
ATGGTGAAGAAGAATTTGAATGTAACACTCATACATGTCCACCTGTCTGG
GCGAACTTGGTGCTTAGATTTGACAGTGAATAT

Run BLAST on NCBI

transcript from alignment at scaffold_477:413403..419008-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067915 ID=TCONS_00067915|Name=TCONS_00067915|organism=Clytia hemisphaerica|type=transcript|length=5606bp|location=Sequence derived from alignment at scaffold_477:413403..419008- (Clytia hemisphaerica)
AACTTGTGGTACAGATCTCGTGGCGACTTATGAGACAACACAATGTCTAG
ATATAAGTAATTGCTTTGAGAGTGGATATTACATGGGTGGTCAAGGAGAA
TCATGTGATATTTTCTGTTCCTCAAGAGGTAAAAATAACTGATTTTGATA
AGTTGATAAGCCAATGAAATTATGAAAGCTCTGTAAAGATGACAATGTCA
TTTGCAATTTGATTGGTCAAAAGGATAAAAAATTAACCAATCAAACACCC
TTTAATTGCCGTAAACCCTTTGGCGTAAAATCTTTCAGTCTTCTGGGTCA
TTCTTACATTAGAAATGGTGAAATCAATCTCTATCCTGAAAAGACAGAGA
CGAACATCGTCGCAAGTGTCTTGGAATTATGNCAACGACTACCACGGAAA
ATCCTACGACCACCACACAAAAACCTACGACCACCACGGAAAAACCTACG
ACCACAACAGAAAAAACTACGACCACCACGGAAAAACCTACAACCACCAC
TACTCCAACGACAACGACCACCACTACGACAACGGAGGAGCCCTACACCG
GCCCAGTTACAGGTATGTCATATCTATTTCAGTTTCTTGAGCAATTTCCC
TCTACGGCTCTGAGTAAAATATCAAATCCTTGACAAATTAAAAAGCCCAT
AAAATCTTTAAACAACCAGTCCAGGATAACTGAAGGTCAGAAGCACAGGT
CAACAGAATCACATTTCATATCTTACAATCTCAAGAAAAGATTGACTGTG
GTATAGTGGTCATTGACCTTGGTTGCTGCACAGGCGACTGAGGTTCGATT
CCCACTCGCAGCGGTTCACTTGACAAGTCAATGAACCTTCGCCCGGGTCA
ACCTATGCCATGTGAGGGGAATTGGGTAGTAAGCCTAAGGTGCTGACGGG
GTGCTTATTGAAAGCGTCTATAGTTGCGAAAAAAAGGCCTCAAAGCCTCC
TGCAACTCAACCAAATAGAAATAGACTAATTTTTCTTTAATAGATTTAGC
AAATGTTGGTTCGTGGACCACCTGGCCGATCTGTACTCCATCGTGTGAGG
TTCAAACCTTACATCGCTCTAGGTCGTGTTACTCCACAACAAAAGACGAG
GTGGCGAAAACTTGTGGTACAGATCTCGTGGCGACTTATGAGACAACACA
ATGTCTAGATATAAGTAATTGCTTTGAGAGTGGATATTACATGGGTGGTC
AAGGAGAATCATGTGATACTTTCTGCTCTTCAAGAGGTAAAAATACTTAT
TTTGGATTAGCCAATGAATTGCAAGAGCTTTGTAAAGATGACAATGTCAC
TTGCAATTTGATTGGTCAAAAGGATCACAAATAAACCAATCAAACTCCCT
TTATTTGACGTAAATCCCTCATCTTTGAGACTTCTGGGTCATTCTTACAT
TAGAAATGGTGAAATCAATCTCTATCCTGAAAAGACAGAGACGAACATCG
TCGCAAGTGTCTTGGAATTATGTTAATATCCGGTTATCTTTAACCCAGCT
GACACACAACGTTGTTTTTGAAAACGTCGAAAAAACGTTGTGTGCCAGCT
GGGTAATCTAACATTCATCACATCAATGTTTCTTTAGGTATGGTCTGTTC
AACTGAAATAAAAACGGGGAATTCACCAACTATATTTCAAAGTGTTTTAC
CAAACTACAAGATGAGCACCAATCAACCAACGTGGAATAAACCTTACTCT
CCCCATTGCGATGAACAAAACCATTGTTATGGATATTCGAATGTACCAGA
CGAAGTATCGTGTGAAGTGGCACCGGTGGCTCAACAGCGCCGCTTTTGTC
ATTGCATGAATAGGGGTAAGCAAAATTTCGATTTTCTTTAGCGCTAAAGC
TTAGGCGGGCAATAGCCTGTAAACAGCGACATAAAGTCAGTTATAAGTAA
AGTCAGACATCTAGCTCAATTTCTTCTAATCATGTTTCCAAGGCAGGGAT
CTTGACCAGACAGCTTCTCTTTTAAAAAAACTAATTTACTAGAGATTGTA
CATTTTATGTTAAGGTAATAATTTCCACCATTATGGGAAAAACAATCTTT
GAAGGACAAATGACAGGTTATCCTCCGTAAAGTTGGATATCATCTAAGCA
TCATCAAAGATTTCATCATCAATGAAAGTAAAAGAATCAAAGAAATGTGC
AAAAAATGATGATTTCATTTGGCGTGTGAGAGAAAGTCCCAGAACAGATA
ACCTTCACTTGATAAAAGCAAACAAAAACTTTGCTAACCAAAACCTGTCA
ATAATTAGCCTCAGTAAGCGACGATGAGCTGCCAACAAAACATTAGCTTT
TCTTTTTAATTGTAAAGTAGCGTTGAATTTTATCAGCCTTTGTTGCTGCC
TTTTCGTCAACTTAAAATAACCCAGCTGGCACACAACGTTTTTTTGACGT
TTATGTAACGTTCACAACGTCCGTATAACGTTAGATGAACGTTGAAACAA
CGTTTTGTGCCAACTGGGAAACTATTACATACATACATAAAGACGGAAAC
CGTGCAACCTCTTTGATAAAATATTATTTTTCACAGCTGACCTTGGATAT
GNTTGAAAACGTCGAAAAAACGTTGTGTGCCAGCTGGGTAATCTAACATT
CATCACATCAATGTTTCTTTAGGTATGGTCTGTTCAACTGAAATAAAAAC
GGGGAATTCACCAACTATATTTCAAAGTGTTTTACCAAACTACAAGATGA
GCACCAATCAACCAACGTGGAATAAACCTTACTCTCCCCATTGCGATGAA
CAAAACCATTGTTATGGATATTCGAATGTACCAGACGAAGTATCGTGTGA
AGTGGCACCGGTGGCTCAACAGCGCCGCTTTTGTCATTGCATGAATAGGG
GTAAGCAAAATTTCGATTTTCTTTAGCGCTAAAGCTTAGGCGGGCAATAG
CCTGTAAACAGCGACATAAAGTCAGTTATAAGTAAAGTCAGACATCTAGC
TCAATTTCTTCTAATCATGTTTCCAAGGCAGGGATCTTGACCAGACAGCT
TCTCTTTTAAAAAAACTAATTTACTAGAGATTGTACATTTTATGTTAAGG
TAATAATTTCCACCATTATGGGAAAAACAATCTTTGAAGGACAAATGACA
GGTTATCCTCCGTAAAGTTGGATATCATCTAAGCATCATCAAAGATTTCA
TCATCAATGAAAGTAAAAGAATCAAAGAAATGTGCAAAAAATGATGATTT
CATTTGGCGTGTGAGAGAAAGTCCCAGAACAGATAACCTTCACTTGATAA
AAGCAAACAAAAACTTTGCTAACCAAAACCTGTCAATAATTAGCCTCAGT
AAGCGACGATGAGCTGCCAACAAAACATTAGCTTTTCTTTTTAATTGTAA
AGTAGCGTTGAATTTTATCAGCCTTTGTTGCTGCCTTTTCGTCAACTTAA
AATAACCCAGCTGGCACACAACGTTTTTTTGACGTTTATGTAACGTTCAC
AACGTCCGTATAACGTTAGATGAACGTTGAAACAACGTTTTGTGCCAACT
GGGAAACTATTACATACATACATAAAGACGGAAACCGTGCAACCTCTTTG
ATAAAATATTATTTTTCACAGCTGACCTTGGATATGCAGACTGGGCGCCA
TGGTCACACTGTTCACAAACGTGTGAAGGTGTAAAACGAAGAACGAGAGA
ATGTTTAGGATTGCAATGCGATGGAGACAGTGAAGAAATGAATAATTGTG
GAACGGAACGATGTCCTAGTAAGTGAAACAAAGCTTTTCTATTGGCCAGA
AATGACGTAATTCCCCACATCAGCCAATAGAAAATAGAGATACATAATTG
TGGAACGGAACGATGTCCTAGTAAGTAAAAGAAAGCTTTTCTATTTGGCC
AGAAATGACGTAATTCCCCACATCAGCCATAATAGAAAATAGAATACATA
ATTGTGGAACGGAACGATGTCCTATTAAGTGAAACAAAGATTTCCTATTG
GTCAGAAATGACGTAATTCCCTACATCAGCCAATAGAATCCTCCCAATAT
AAGACCATTAAGACCTACCTCATTCCATAAACGTTTTGATGGAAAAAAAC
AACCACCTCGTTTATACTTTTAAAACGCAAGAGTCTGCAAATTTTGAGAC
TGACTTTCATTTTACTTTCCAAAACAATAATAATTTTATTATTTCATTTA
CAGTTCATGGCGGCTTTTCCGATTGGTCGTCATGGTCACAATGTGACGTC
ACATGTGGTGGTGGCACCACACACCGCTCACGCCAGTGCAATAACCCAAC
ACCACGATACGGTGGCAATGGTTGTATTGGATCTGTAGAAGAAGATGATA
CGTGCAATAATCATTTCTGTCCAGGTTTGTGTAATAATTGAACTCGGCTT
TCTAGTTTTTTTACTCAGAATTATACGATCATCTCGACTACACTAGGTCA
CCAAAAGGGAATAATTTAGGAGACCTAACTCTAACGACGCTTTGTTTTTT
CCGTCTACCACCCTTTACGGCTGTAAACGTCCCCCACATATATTTTCTCG
CGTTTACTATCCCAGAAGATAGCGTCGTCTAACTGAGCAACCATTCAATC
ACTGGTAAAAAGAAAGGAAAGTTTTTGCTTAACCTCCCCATATTCAAACT
TGTGGTTCAGCCCCTAACATTAGTAAGTTTATGTATCAGTATTTTTCTGC
GACGGAGACGGCCAGCCTTTTCTATCTATCTAAATCCTGAATTGTATAAG
GTACGAAACTCACCAATTTTCTCTCTATTTTATCTCTGAATTTAACATAT
AACTAAAATTAACTGACGCCCAATTCTATTTCAGTGGATGCAGTTTGGTT
AGAATGGTCTGATTGGTCATTTTGTAACAAAGCATGCGGTAATGGTACTG
GCATGAGAACGAGGCAATGTAAACATGGTATGTATGGTGGTAGAAGAGAT
TGTATTGGGAATGGTGAAGAAGAATTTGAATGTAACACTCATACATGTCC
ACGTAAGATTTGATTGAAAGGGATAACCAGATAAAAAAGTTAAATTCAAC
CAAAAGATTCCTTCCATAGACCTTAGCAGAACCTTCAAATTTTACTGGCT
ACTTGTTTTTCAAAGTCAGAATATTTAGGCTAGTTATTTTCCGTTTCTTC
TTGGAAACTTTTGGTCTTACTAAGGACCATGGAAGGAATCTTTGAGATAA
GTGTTACTTTTATCTGGTTATGCCTTTAAAATACCATTGGGTGAGAGCTT
CTAGTATCAAAGACAAGAGGGGTTAGGAGTTAGGAGCAACTAAAATCATA
CAAGAGCGTTTTCATAACTGCGCAAGAATTCAAATCCATTTTCTCTACAA
ATATTTAATTAATTGGTTAATTAGCAAAGACTTTTCTACATCTCACTCTT
TCCCCTCAATGAAAACTTTTTCTTCAAGAAATGTGATTTTGATGGCCTTT
GCTTTTAATATCCACCGGGTAACAATAAGTATTACTGAACTCACTATTGC
ATTTGCGCTTGCTAGAAAGTATTCAACACTAAGCAAACAAGTTTTCGTAT
CTTTATTCAAATAACTTTCTTGTTTTCTGGATTTTTCGACCGTAAAACTT
ATTTCTTCTTTACAGCTGTCTGGGCGAACTTGGTGCTTAGATTTGACAGT
GAATAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042413	XLOC_042413	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_477	supercontig	scaffold_477:413403..419008 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0250742	0.0585906	0	0	0	0	0	0.0219125	0	0	0	0	0.954964	0	0	0	0	0	1.95847	0	0	0	0	0.0374591	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00067915 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.014e-29
Identity = 66/168 (39.29%), Postives = 87/168 (51.79%), Query Frame = 2

Query:  365 GYADWAPWSHCSQTC-EGVKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH-GMYGGRRDCIGNGEEEFECNTHTCP 841
             ++ W PW  CS++C +G + R R C        G  CDG   +M  C    CPIHG ++ W+SWS C V+CGGG   R+R C++P P+YGG  C GS  + D CN+  CP    W  WS W  C++ C  G   R R C +     G R C G   +   CNT  CP
Sbjct: 4645 AWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812

HSP 2 Score: 121.324 bits (303), Expect = 1.092e-29
Identity = 66/167 (39.52%), Postives = 84/167 (50.30%), Query Frame = 2

Query:  368 YADWAPWSHCSQTCEG-VKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKHGM-YGGRRDCIGNGEEEFECNTHTCP 841
            +A WA WS CS +C G  ++RTR C        G +C+G   + + C ++ CP HG +S WS W  C  TC GG   R R C+NP P  GG  C G   +   CN   CPVD  W  W  WS C+ +CG G   R R C H +   G R C G+  +   CN   CP
Sbjct: 4703 WATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869

HSP 3 Score: 120.553 bits (301), Expect = 1.578e-29
Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = 2

Query:  341 HCMNR---ADLGYADWAPWSHCSQTC-EGVKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKHGM--YGGRRDCIGNGEEEFECNTHTCP 841
            +C N+    D  +++W+ W  C+++C  G + RTR C        G  C+G++ E+  C    CP+HG +S W  W  C  +CG GT  R+R CNNP P +GG+ C G+  +   CN   CP+   W  W+ WS C+ +CG G   RTR C   +  YGGR+ C G+  +   CN+  CP
Sbjct: 4577 NCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRK-CEGSDVQSDFCNSDPCP 4755

HSP 4 Score: 117.087 bits (292), Expect = 2.777e-28
Identity = 64/169 (37.87%), Postives = 89/169 (52.66%), Query Frame = 2

Query:  365 GYADWAPWSHCSQTC-EGVKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH--GMYGGRRDCIGNGEEEFECNTHTCP 841
            G++ W+ W  CS TC +G+++R+R C        G  C G   EM NC  + CP+ G +S+WS W +C  +CG G   R+R CNNP+ ++GG  C G+  E   CN   CPV   W  W  W  C+++CG GT  R R C +    +GG   C G   +   CN   CP
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSY-CDGAETQMQVCNERNCP 4698

HSP 5 Score: 111.694 bits (278), Expect = 1.424e-26
Identity = 56/114 (49.12%), Postives = 62/114 (54.39%), Query Frame = 2

Query:  503 IHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH-GMYGGRRDCIGNGEEEFECNTHTCP 841
            +HGGFS WS+W  C VTCG G   RSR CN P P  GG  C GS  E   C N  CPVD  W EWS W  C ++CG G   RTR C +  +  G R C GN  E   CN   CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641

The following BLAST results are available for this feature:

BLAST of TCONS_00067915 vs. Swiss-Prot (Human)

BLAST of TCONS_00067915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	1.014e-29	39.29	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00067915 (transcript) - C. hemisphaerica