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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067885 ID=TCONS_00067885|Name=TCONS_00067885|organism=Clytia hemisphaerica|type=transcript|length=3993bp
ggtaaaagctataaaagtataaaaaaatgaaggataATTTTGGATGAGAA
TCTGACTTGAAGAATGGCTGGTACAAGATACTTGCGTActcttttctatt
gttctattgGAGCACTTCTTGGTCTCATTTCACCGTCATTGTATTATGGC
TTAATACCAAGATGTCAACAAAACACAGAGTCTACAATGCAACGGAGAAA
TATTAAAGATATAGCAGCCACCTCAAAAAATGCTGCTTTACCGAAAAAGA
AGTTATTGTTTGCTGGTGTTATGACTGCTGAGAAGTTTTTAGATACGCGT
GCCAAAGCTGTTTATGAAACATGGGGTAAAATAATGCCAGgaaaaatgat
gttttttgCCAGTAGTAGTTCTCATAGGGATGACCTTCCAGTAGTTTCCC
TGACCGGTGTTGATGACTCATACCCACCGCAACGAAAGTCGATGATGATG
TTAAAATACATGCATGATAATTTCATTGATGATTTCGAATGGTTTTTACG
CGCGGACGATGATGTGTACATACGGACGGACAAAATGGAGCAGTTTCTAC
GCCAATTAAACAGCAGTGATGATCTGTATATAGGTCAAGCTGGTGTTGGT
ATTCAAAAAGAGAAAGGAAAACTGGGTTTAGGGCTAGGTGATAATTTTTG
TATGGGTGGACCAGGGGTGATTATTAGTGCGAGTACTTTGAGGAAAGTGG
TTCCCTATTTGGAGCATTGTTTGCAGAATTTGTACACAACTCATGAAGAT
GTGGAAGTTGGAAGATGTATCAAGAAATTTGTTGGAATTTCTTGTACATG
GGCTTTCGAGATGCAGTCACTGTTCTATCACAATCGGACAGGTGCCAAAG
CTTACACCACAAACTTAGATACCAAGGCTGTCCGTAATGCAGTCACTCTA
CATCCGTTGAAAAGACCGGAATTCATGTACCGGTTACACACGCATTTCAT
GGAGCTGAAGATTCAACAGACTTCTTATGATGTTGTGGTGCATCAAAGGC
AACTCGATATTGTAGAgaaacttttgacaaaagATCTTGACAAGCAGTCT
GATGACAAATTGGCTCGTCTCAAAGATCGTAAAATGTTTAACCAGAAGAT
GTTACCTAAAGAAGTACCAGACTGGGAGATGTTTACTCCTAGAAAAGTGT
ATTCCTACCAAACTAATGCACCGGAGATTGGAATGTTAAATCCAGTGAAA
GATGGACTGAATCATGTCCTTGGTCAAACCATGTCCATTATCAATAAAGA
GGCTCGTAAAGTCTTACATCGCACGTTAGAGTTTAAGAGGTTAAACCACG
GATATAAGAGATATCATCCTAGATACGGAATGCAGTATATGTTAGATTTG
TTGATGAAATATCATCGACATGTCGGTTATAATAGACGTCGAATGACGGT
TCATGTCCGTCATCACGCTTATTTGCAGCAACCTTTTACTAGTTTAATGT
ATGCGGAAGATGAGCAAACACGTGTTCAGGAACCAATCAATTTCTTGCTT
CCGCTAGCTGGAAGGTTGGTCCAATTTAAGAGATTTATGGGGAACTTTGA
ACGAATTTGTTTACACCAAGAGGAGAAGGCTTCTCTTACTATCCTTTACT
TCCCTGATGAGGGTCATAATTCAACCGAGCATAAAATTATTTTCGagtct
ttgaaagaaaaatacacACGTGCTAATCTCAAGTGGATCAATATGGAAGG
GCGCTTCTCAAGGGCGCTTGCTTTGACGGTAGGCGTGGCTCAATTTGATA
AAActtcattgttgtttttctgCGATGTTGATTTAGAGTTTGATAGCGCT
TTTATGGAGCGTTGCCGATCAAATACTGTTTTAGATCAGCAGATTTACTA
TCCGATTNTAGAGTTTGATAGCGCTTTTATGGAGCGTTGCCGATCAAATA
CTGTTTTAGATCAGCAGATTTATTATCCGATCGTGTTCAGCCAATTCGAT
CCAGAGATGGCTAACTATAAACAGGAAAAGCCAGAATCTGTGTTTTATTA
TTCTAAGGATACTGGTTTTTGGCGGAAATACGCGTTTGGGATCACATGTC
AGTATCGTCgtgattttgatttgattggtgGTTTTGATACCACGATACAG
GGTTGGGGAATGGAGGATGTTGATTTATATGACCGATTCGTGTTAAGTGA
AAAACATAACGTTTTCCGCGCACCTGATCCCGGTTTAGTTCATATTTATC
ATCCTGTACAATGCGATGAGAAAATAGCGGAGAAACAATTGAAAATGTGT
TACGCGTCGAAAGCGCAAACTTACGGGTCACAGAATAAGATTTACGAGGT
GCTTTATGATCGAGGATATTTCAACCAAACGAAGAGTTTGGCGGATGATG
AATTATTCTTCTATTAATTTTTGAGGTACATAACATTAGGTCTAGCTACA
CTATGGAGGTACCaacattttattgaaatattatcTTTGAACATGAGAAG
TTCACTCTATTTAAAAAGTAACCACTTAAAGTCTcaagggatttaatcac
cttggtaatggtaATAGATCTAAGACGAGGCAGTCGTTGCGCTCAATAAT
TTTTGAGGTAAATAAATAATATTGAGTCTAGCTACACTATTTTCCaacat
tttattgaaatattatcTTTGAACAATTTTGATGCATTATACAAAGAGTC
TTTATTCACGATCGGAAATAGTATTTATACACTTTTGTATTTGAGTAGTA
ggaagtttgcgaccgcagtcgaaggCGACCTGTAGGCTCCTCTTCCGATA
CTTTAATgtgataaactttcgcgaggattaaatttcgcggatttcgcgga
tttgagtgtcatccgcgaaaatccgtgaaattaagtcccaatggaaattt
ggaagggccgcCTCAtctgcgaaatatttctaaataaaactcaaaatatg
tcaaacaaaatactttttgaatgtttactggcatcaaagaagcgctaata
aNCTCTTCCGATACTTTAATgtgataaactttcgcggggattaaatttcg
cggatttaatattgtgtatttcaacaacgaaaatgcatgatttgacagta
taagtcgcaaaatcgtgaaaatattgccacccaatagtgccacccgcgaa
gtttaatccccgcgaaagttttatcccattaaagtagcttAATTTTGTAC
AAGTCTTTGTTATGACACGCCGGGGATTGgatctttttcgaattttcttc
atACAGTAACTTTTTCATAACACGTGAAGTAAATTTAgagtatgatagct
caaaatatAAGTTAGCCTTTCTTCTTTCTGTAATGAAAAGTTTAGGtaaa
taacatttttagttttctcgCGAATTCGCTTgttaattttccgaaaattt
ttccggcccttattaggaccccccagaatattttcagctgtcaaaaagAA
AGCCTCTTAttctgctctaaatagcctgattttaacctatatttacctta
tttttgggttttcgtaattacaatttccaacccgatccccccggcaatta
gccccccgtttattaatatTTTATTCCCGCGTTTATTCGACCGCCCCCTC
CCGTTTCTTTGGAACCTAAGATTAATATGAATCTTCCCAGATTGCTTGTG
CAGCGTCGAACTTTTTAAAAAGGAAGAAATCCTTGAATCAATCATATACG
ATATGCATTTAATATTTAGCTTAGACAATTTAGAATTtatacaaattttt
aaaaattttaaaatgaaaaaagagacggtttttaaatgtttatattATTG
GTATGAGAAATTATTTAtgagaaaattatttaaaagattttagggTGAAA
AAGTATTTATGGTATTTTTAATTGAAGAATATGACTTATTTAGAAAATAT
TCAAGGGTAATGATATTTATTGTTGACTAGAACGATGATAAAATTTAAAC
CTTAAGGCCTCTCTCCAccttcgcgcgacatgagcgaaaacttttaaacg
tttttgtaaggtcattggttggttgaaaaatgaagcaattcca Run BLAST on NCBI protein sequence of TCONS_00067885-protein >TCONS_00067885-protein ID=TCONS_00067885-protein|Name=TCONS_00067885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=767bp
MAGTRYLRTLFYCSIGALLGLISPSLYYGLIPRCQQNTESTMQRRNIKDI
AATSKNAALPKKKLLFAGVMTAEKFLDTRAKAVYETWGKIMPGKMMFFAS
SSSHRDDLPVVSLTGVDDSYPPQRKSMMMLKYMHDNFIDDFEWFLRADDD
VYIRTDKMEQFLRQLNSSDDLYIGQAGVGIQKEKGKLGLGLGDNFCMGGP
GVIISASTLRKVVPYLEHCLQNLYTTHEDVEVGRCIKKFVGISCTWAFEM
QSLFYHNRTGAKAYTTNLDTKAVRNAVTLHPLKRPEFMYRLHTHFMELKI
QQTSYDVVVHQRQLDIVEKLLTKDLDKQSDDKLARLKDRKMFNQKMLPKE
VPDWEMFTPRKVYSYQTNAPEIGMLNPVKDGLNHVLGQTMSIINKEARKV
LHRTLEFKRLNHGYKRYHPRYGMQYMLDLLMKYHRHVGYNRRRMTVHVRH
HAYLQQPFTSLMYAEDEQTRVQEPINFLLPLAGRLVQFKRFMGNFERICL
HQEEKASLTILYFPDEGHNSTEHKIIFESLKEKYTRANLKWINMEGRFSR
ALALTVGVAQFDKTSLLFFCDVDLEFDSAFMERCRSNTVLDQQIYYPIXE
FDSAFMERCRSNTVLDQQIYYPIVFSQFDPEMANYKQEKPESVFYYSKDT
GFWRKYAFGITCQYRRDFDLIGGFDTTIQGWGMEDVDLYDRFVLSEKHNV
FRAPDPGLVHIYHPVQCDEKIAEKQLKMCYASKAQTYGSQNKIYEVLYDR
GYFNQTKSLADDELFFY Run BLAST on NCBI transcript from alignment at scaffold_477:287354..292035+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067885 ID=TCONS_00067885|Name=TCONS_00067885|organism=Clytia hemisphaerica|type=transcript|length=4682bp|location=Sequence derived from alignment at scaffold_477:287354..292035+ (Clytia hemisphaerica)
ggtaaaagctataaaagtataaaaaaatgaaggataATTTTGGATGAGAA
TCTGACTTGAAGAATGGCTGGTACAAGATACTTGCGTActcttttctatt
gttctattgGAGCACTTCTTGGTCTCATTTCACCGTCATTGTATTATGGC
TTAATACCAAGATGTCAACAAAACACAGAGTCTACAATGCAACGGAGAAA
TATTAAAGATATAGCAGCCACCTCAAAAAATGCTGCTTTACCGAAAAAGA
AGTTATTGTTTGCTGGTGTTATGACTGCTGAGAAGTTTTTAGATACGCGT
GCCAAAGCTGTTTATGAAACATGGGGTAAAATAATGCCAGgaaaaatgat
gttttttgCCAGTAGTAGTTCTCATAGGGATGACCTTCCAGTAGTTTCCC
TGACCGGTGTTGATGACTCATACCCACCGCAACGAAAGTCGATGATGATG
TTAAAATACATGCATGATAATTTCATTGATGATTTCGAATGGTTTTTACG
CGCGGACGATGATGTGTACATACGGACGGACAAAATGGAGCAGTTTCTAC
GCCAATTAAACAGCAGTGATGATCTGTATATAGGTCAAGCTGGTGTTGGT
ATTCAAAAAGAGAAAGGAAAACTGGGTTTAGGGCTAGGTGATAATTTTTG
TATGGGTGGACCAGGGGTGATTATTAGTGCGAGTACTTTGAGGAAAGTGG
TTCCCTATTTGGAGCATTGTTTGCAGAATTTGTACACAACTCATGAAGAT
GTGGAAGTTGGAAGATGTATCAAGAAATTTGTTGGAATTTCTTGTACATG
GGCTTTCGAGGTAAGTTTGAGctatttttctttctatttttcacCAGTAT
TATAATGATCGTTGTCTTTTGACACCACGTCAATTTTATAATAGCTGTAG
CTGATTCGTTGCAGGTGACGCATTGGGTAAAAAAAAGACAgaatatttta
tatttatataaattttgatatttctgaaGTCATTTTAGTGGTgcattttt
tgaattaatttggATTGATGAACTCCTGagaatttgatttgattatgtTT
ACAGCAAGCATAGAATTTCTGTACTATGTATTCTCCGACTCGCATTTGac
attatttgaaattttcttattacAACTTGCTTTGCTTCTTTTTTCTGATA
ACCGATATCTTGACACCTTGTTTAATTCTTTACTTGCTTTTNGCTTCTTT
TTTCTGATAACCGATATCTTAACACCTTGtttaattctttatttgctttg
tCTTAATTTCTTACAGATGCAGTCACTGTTCTATCACAATCGGACAGGTG
CCAAAGCTTACACCACAAACTTAGATACCAAGGCTGTCCGTAATGCAGTC
ACTCTACATCCGTTGAAAAGACCGGAATTCATGTACCGGTTACACACGCA
TTTCATGGAGCTGAAGATTCAACAGACTTCTTATGATGTTGTGGTGCATC
AAAGGCAACTCGATATTGTAGAgaaacttttgacaaaaggttagtattat
taaaactttttattgagAACTTCGTAACTCCTACGCTGACACACTACGCT
CACAGGGAGCGCTTCGCCAGAAGactttttcgattttcaagtgACAATTA
GTCCAGCTTTGCATTACTTTCTGTTACTTAGATAACAGAAAGTGACAAGT
CTCTTCTGACTCAAAATATTCACCGCACAACTTGTTAAATGATCCATAAG
AACATTTGTTGTTTTCTTCCAGATCTTGACAAGCAGTCTGATGACAAATT
GGCTCGTCTCAAAGATCGTAAAATGTTTAACCAGAAGATGTTACCTAAAG
AAGTACCAGACTGGGAGATGTTTACTCCTAGAAAAGTGTATTCCTACCAA
ACTAATGCACCGGAGATTGGAATGTTAAATCCAGTGAAAGATGGACTGAA
TCATGTCCTTGGTCAAACCATGTCCATTATCAATAAAGAGGCTCGTAAAG
TCTTACATCGCACGTTAGAGTTTAAGAGGTTAAACCACGGATATAAGAGA
TATCATCCTAGATACGGAATGCAGTATATGTTAGATTTGTTGATGAAATA
TCATCGACATGTCGGTTATAATAGACGTCGAATGACGGTTCATGTCCGTC
ATCACGCTTATTTGCAGCAACCTTTTACTAGTTTAATGTATGCGGAAGAT
GAGCAAACACGTGTTCAGGAACCAATCAATTTCTTGCTTCCGCTAGCTGG
AAGGTTGGTCCAATTTAAGAGATTTATGGGGAACTTTGAACGAATTTGTT
TACACCAAGAGGAGAAGGCTTCTCTTACTATCCTTTACTTCCCTGATGAG
GGTCATAATTCAACCGAGCATAAAATTATTTTCGagtctttgaaagaaaa
atacacACGTGCTAATCTCAAGTGGATCAATATGGAAGGGCGCTTCTCAA
GGGCGCTTGCTTTGACGGTAGGCGTGGCTCAATTTGATAAAActtcattg
ttgtttttctgCGATGTTGATTTAGAGTTTGATAGCGCTTTTATGGAGCG
TTGCCGATCAAATACTGTTTTAGATCAGCAGATTTACTATCCGATTNTAG
AGTTTGATAGCGCTTTTATGGAGCGTTGCCGATCAAATACTGTTTTAGAT
CAGCAGATTTATTATCCGATCGTGTTCAGCCAATTCGATCCAGAGATGGC
TAACTATAAACAGGAAAAGCCAGAATCTGTGTTTTATTATTCTAAGGATA
CTGGTTTTTGGCGGAAATACGCGTTTGGGATCACATGTCAGTATCGTCgt
gattttgatttgattggtgGTTTTGATACCACGATACAGGGTTGGGGAAT
GGAGGATGTTGATTTATATGACCGATTCGTGTTAAGTGAAAAACATAACG
TTTTCCGCGCACCTGATCCCGGTTTAGTTCATATTTATCATCCTGTACAA
TGCGATGAGAAAATAGCGGAGAAACAATTGAAAATGTGTTACGCGTCGAA
AGCGCAAACTTACGGGTCACAGAATAAGATTTACGAGGTGCTTTATGATC
GAGGATATTTCAACCAAACGAAGAGTTTGGCGGATGATGAATTATTCTTC
TATTAATTTTTGAGGTACATAACATTAGGTCTAGCTACACTATGGAGGTA
CCaacattttattgaaatattatcTTTGAACATGAGAAGTTCACTCTATT
TAAAAAGTAACCACTTAAAGTCTcaagggatttaatcaccttggtaatgg
taATAGATCTAAGACGAGGCAGTCGTTGCGCTCAATAATTTTTGAGGTAA
ATAAATAATATTGAGTCTAGCTACACTATTTTCCaacattttattgaaat
attatcTTTGAACAATTTTGATGCATTATACAAAGAGTCTTTATTCACGA
TCGGAAATAGTATTTATACACTTTTGTATTTGAGTAGTAggaagtttgcg
accgcagtcgaaggCGACCTGTAGGCTCCTCTTCCGATACTTTAATgtga
taaactttcgcgaggattaaatttcgcggatttcgcggatttgagtgtca
tccgcgaaaatccgtgaaattaagtcccaatggaaatttggaagggccgc
CTCAtctgcgaaatatttctaaataaaactcaaaatatgtcaaacaaaat
actttttgaatgtttactggcatcaaagaagcgctaataaNCTCTTCCGA
TACTTTAATgtgataaactttcgcggggattaaatttcgcggatttaata
ttgtgtatttcaacaacgaaaatgcatgatttgacagtataagtcgcaaa
atcgtgaaaatattgccacccaatagtgccacccgcgaagtttaatcccc
gcgaaagttttatcccattaaagtagcttAATTTTGTACAAGTCTTTGTT
ATGACACGCCGGGGATTGgatctttttcgaattttcttcatACAGTAACT
TTTTCATAACACGTGAAGTAAATTTAgagtatgatagctcaaaatatAAG
TTAGCCTTTCTTCTTTCTGTAATGAAAAGTTTAGGtaaataacattttta
gttttctcgCGAATTCGCTTgttaattttccgaaaatttttccggccctt
attaggaccccccagaatattttcagctgtcaaaaagAAAGCCTCTTAtt
ctgctctaaatagcctgattttaacctatatttaccttatttttgggttt
tcgtaattacaatttccaacccgatccccccggcaattagccccccgttt
attaatatTTTATTCCCGCGTTTATTCGACCGCCCCCTCCCGTTTCTTTG
GAACCTAAGATTAATATGAATCTTCCCAGATTGCTTGTGCAGCGTCGAAC
TTTTTAAAAAGGAAGAAATCCTTGAATCAATCATATACGATATGCATTTA
ATATTTAGCTTAGACAATTTAGAATTtatacaaatttttaaaaattttaa
aatgaaaaaagagacggtttttaaatgtttatattATTGGTATGAGAAAT
TATTTAtgagaaaattatttaaaagattttagggTGAAAAAGTATTTATG
GTATTTTTAATTGAAGAATATGACTTATTTAGAAAATATTCAAGGGTAAT
GATATTTATTGTTGACTAGAACGATGATAAAATTTAAACCTTAAGGCCTC
TCTCCAccttcgcgcgacatgagcgaaaacttttaaacgtttttgtaagg
tcattggttggttgaaaaatgaagcaattcca Coding sequence (CDS) from alignment at scaffold_477:287354..292035+ >TCONS_00067885 ID=TCONS_00067885|Name=TCONS_00067885|organism=Clytia hemisphaerica|type=CDS|length=6912bp|location=Sequence derived from alignment at scaffold_477:287354..292035+ (Clytia hemisphaerica)
ATGGCTGGTACAAGATACTTGCGTActcttttctattgttctattgGAGC
ACTTCTTGGTCTCATTTCACCGTCATTGTATTATGGCTTAATACCAAGAT
GTCAACAAAACACAGAGTCTACAATGCAACGGAGAAATATTAAAGATATA
GCAGCCACCTCAAAAAATGCTGCTTTACCGAAAAAGAAGTTATTGTTTGC
TGGTGTTATGACTGCTGAGAAGTTTTTAGATACGCGTGCCAAAGCTGTTT
ATGAAACATGGGGTAAAATAATGCCAGgaaaaatgatgttttttgCCAGT
AGTAGTTCTCATAGGGATGACCTTCCAGTAGTTTCCCTGACCGGTGTTGA
TGACTCATACCCACCGCAACGAAAGTCGATGATGATGTTAAAATACATGC
ATGATAATTTCATTGATGATTTCGAATGGTTTTTACGCGCGGACGATGAT
GTGTACATACGGACGGACAAAATGGAGCAGTTTCTACGCCAATTAAACAG
CAGTGATGATCTGTATATAGGTCAAGCTGGTGTTGGTATTCAAAAAGAGA
AAGGAAAACTGGGTTTAGGGCTAGGTGATAATTTTTGTATGGGTGGACCA
GGGGTGATTATTAGTGCGAGTACTTTGAGGAAAGTGGTTCCCTATTTGGA
GCATTGTTTGCAGAATTTGTACACAACTCATGAAGATGTGGAAGTTGGAA
GATGTATCAAGAAATTTGTTGGAATTTCTTGTACATGGGCTTTCGAGATG
CAGTCACTGTTCTATCACAATCGGACAGGTGCCAAAGCTTACACCACAAA
CTTAGATACCAAGGCTGTCCGTAATGCAGTCACTCTACATCCGTTGAAAA
GACCGGAATTCATGTACCGGTTACACACGCATTTCATGGAGCTGAAGATT
CAACAGACTTCTTATGATGTTGTGGTGCATCAAAGGCAACTCGATATTGT
AGAgaaacttttgacaaaagATCTTGACAAGCAGTCTGATGACAAATTGG
CTCGTCTCAAAGATCGTAAAATGTTTAACCAGAAGATGTTACCTAAAGAA
GTACCAGACTGGGAGATGTTTACTCCTAGAAAAGTGTATTCCTACCAAAC
TAATGCACCGGAGATTGGAATGTTAAATCCAGTGAAAGATGGACTGAATC
ATGTCCTTGGTCAAACCATGTCCATTATCAATAAAGAGGCTCGTAAAGTC
TTACATCGCACGTTAGAGTTTAAGAGGTTAAACCACGGATATAAGAGATA
TCATCCTAGATACGGAATGCAGTATATGTTAGATTTGTTGATGAAATATC
ATCGACATGTCGGTTATAATAGACGTCGAATGACGGTTCATGTCCGTCAT
CACGCTTATTTGCAGCAACCTTTTACTAGTTTAATGTATGCGGAAGATGA
GCAAACACGTGTTCAGGAACCAATCAATTTCTTGCTTCCGCTAGCTGGAA
GGTTGGTCCAATTTAAGAGATTTATGGGGAACTTTGAACGAATTTGTTTA
CACCAAGAGGAGAAGGCTTCTCTTACTATCCTTTACTTCCCTGATGAGGG
TCATAATTCAACCGAGCATAAAATTATTTTCGagtctttgaaagaaaaat
acacACGTGCTAATCTCAAGTGGATCAATATGGAAGGGCGCTTCTCAAGG
GCGCTTGCTTTGACGGTAGGCGTGGCTCAATTTGATAAAActtcattgtt
gtttttctgCGATGTTGATTTAGAGTTTGATAGCGCTTTTATGGAGCGTT
GCCGATCAAATACTGTTTTAGATCAGCAGATTTACTATCCGATTNTAGAG
TTTGATAGCGCTTTTATGGAGCGTTGCCGATCAAATACTGTTTTAGATCA
GCAGATTTATTATCCGATCGTGTTCAGCCAATTCGATCCAGAGATGGCTA
ACTATAAACAGGAAAAGCCAGAATCTGTGTTTTATTATTCTAAGGATACT
GGTTTTTGGCGGAAATACGCGTTTGGGATCACATGTCAGTATCGTCgtga
ttttgatttgattggtgGTTTTGATACCACGATACAGGGTTGGGGAATGG
AGGATGTTGATTTATATGACCGATTCGTGTTAAGTGAAAAACATAACGTT
TTCCGCGCACCTGATCCCGGTTTAGTTCATATTTATCATCCTGTACAATG
CGATGAGAAAATAGCGGAGAAACAATTGAAAATGTGTTACGCGTCGAAAG
CGCAAACTTACGGGTCACAGAATAAGATTTACGAGGTGCTTTATGATCGA
GGATATTTCAACCAAACGAAGAGTTTGGCGGATGATGAATTATTCTTCTA
TTAAATGGCTGGTACAAGATACTTGCGTActcttttctattgttctattg
GAGCACTTCTTGGTCTCATTTCACCGTCATTGTATTATGGCTTAATACCA
AGATGTCAACAAAACACAGAGTCTACAATGCAACGGAGAAATATTAAAGA
TATAGCAGCCACCTCAAAAAATGCTGCTTTACCGAAAAAGAAGTTATTGT
TTGCTGGTGTTATGACTGCTGAGAAGTTTTTAGATACGCGTGCCAAAGCT
GTTTATGAAACATGGGGTAAAATAATGCCAGgaaaaatgatgttttttgC
CAGTAGTAGTTCTCATAGGGATGACCTTCCAGTAGTTTCCCTGACCGGTG
TTGATGACTCATACCCACCGCAACGAAAGTCGATGATGATGTTAAAATAC
ATGCATGATAATTTCATTGATGATTTCGAATGGTTTTTACGCGCGGACGA
TGATGTGTACATACGGACGGACAAAATGGAGCAGTTTCTACGCCAATTAA
ACAGCAGTGATGATCTGTATATAGGTCAAGCTGGTGTTGGTATTCAAAAA
GAGAAAGGAAAACTGGGTTTAGGGCTAGGTGATAATTTTTGTATGGGTGG
ACCAGGGGTGATTATTAGTGCGAGTACTTTGAGGAAAGTGGTTCCCTATT
TGGAGCATTGTTTGCAGAATTTGTACACAACTCATGAAGATGTGGAAGTT
GGAAGATGTATCAAGAAATTTGTTGGAATTTCTTGTACATGGGCTTTCGA
GATGCAGTCACTGTTCTATCACAATCGGACAGGTGCCAAAGCTTACACCA
CAAACTTAGATACCAAGGCTGTCCGTAATGCAGTCACTCTACATCCGTTG
AAAAGACCGGAATTCATGTACCGGTTACACACGCATTTCATGGAGCTGAA
GATTCAACAGACTTCTTATGATGTTGTGGTGCATCAAAGGCAACTCGATA
TTGTAGAgaaacttttgacaaaagATCTTGACAAGCAGTCTGATGACAAA
TTGGCTCGTCTCAAAGATCGTAAAATGTTTAACCAGAAGATGTTACCTAA
AGAAGTACCAGACTGGGAGATGTTTACTCCTAGAAAAGTGTATTCCTACC
AAACTAATGCACCGGAGATTGGAATGTTAAATCCAGTGAAAGATGGACTG
AATCATGTCCTTGGTCAAACCATGTCCATTATCAATAAAGAGGCTCGTAA
AGTCTTACATCGCACGTTAGAGTTTAAGAGGTTAAACCACGGATATAAGA
GATATCATCCTAGATACGGAATGCAGTATATGTTAGATTTGTTGATGAAA
TATCATCGACATGTCGGTTATAATAGACGTCGAATGACGGTTCATGTCCG
TCATCACGCTTATTTGCAGCAACCTTTTACTAGTTTAATGTATGCGGAAG
ATGAGCAAACACGTGTTCAGGAACCAATCAATTTCTTGCTTCCGCTAGCT
GGAAGGTTGGTCCAATTTAAGAGATTTATGGGGAACTTTGAACGAATTTG
TTTACACCAAGAGGAGAAGGCTTCTCTTACTATCCTTTACTTCCCTGATG
AGGGTCATAATTCAACCGAGCATAAAATTATTTTCGagtctttgaaagaa
aaatacacACGTGCTAATCTCAAGTGGATCAATATGGAAGGGCGCTTCTC
AAGGGCGCTTGCTTTGACGGTAGGCGTGGCTCAATTTGATAAAActtcat
tgttgtttttctgCGATGTTGATTTAGAGTTTGATAGCGCTTTTATGGAG
CGTTGCCGATCAAATACTGTTTTAGATCAGCAGATTTACTATCCGATTNT
AGAGTTTGATAGCGCTTTTATGGAGCGTTGCCGATCAAATACTGTTTTAG
ATCAGCAGATTTATTATCCGATCGTGTTCAGCCAATTCGATCCAGAGATG
GCTAACTATAAACAGGAAAAGCCAGAATCTGTGTTTTATTATTCTAAGGA
TACTGGTTTTTGGCGGAAATACGCGTTTGGGATCACATGTCAGTATCGTC
gtgattttgatttgattggtgGTTTTGATACCACGATACAGGGTTGGGGA
ATGGAGGATGTTGATTTATATGACCGATTCGTGTTAAGTGAAAAACATAA
CGTTTTCCGCGCACCTGATCCCGGTTTAGTTCATATTTATCATCCTGTAC
AATGCGATGAGAAAATAGCGGAGAAACAATTGAAAATGTGTTACGCGTCG
AAAGCGCAAACTTACGGGTCACAGAATAAGATTTACGAGGTGCTTTATGA
TCGAGGATATTTCAACCAAACGAAGAGTTTGGCGGATGATGAATTATTCT
TCTATTAAATGGCTGGTACAAGATACTTGCGTActcttttctattgttct
attgGAGCACTTCTTGGTCTCATTTCACCGTCATTGTATTATGGCTTAAT
ACCAAGATGTCAACAAAACACAGAGTCTACAATGCAACGGAGAAATATTA
AAGATATAGCAGCCACCTCAAAAAATGCTGCTTTACCGAAAAAGAAGTTA
TTGTTTGCTGGTGTTATGACTGCTGAGAAGTTTTTAGATACGCGTGCCAA
AGCTGTTTATGAAACATGGGGTAAAATAATGCCAGgaaaaatgatgtttt
ttgCCAGTAGTAGTTCTCATAGGGATGACCTTCCAGTAGTTTCCCTGACC
GGTGTTGATGACTCATACCCACCGCAACGAAAGTCGATGATGATGTTAAA
ATACATGCATGATAATTTCATTGATGATTTCGAATGGTTTTTACGCGCGG
ACGATGATGTGTACATACGGACGGACAAAATGGAGCAGTTTCTACGCCAA
TTAAACAGCAGTGATGATCTGTATATAGGTCAAGCTGGTGTTGGTATTCA
AAAAGAGAAAGGAAAACTGGGTTTAGGGCTAGGTGATAATTTTTGTATGG
GTGGACCAGGGGTGATTATTAGTGCGAGTACTTTGAGGAAAGTGGTTCCC
TATTTGGAGCATTGTTTGCAGAATTTGTACACAACTCATGAAGATGTGGA
AGTTGGAAGATGTATCAAGAAATTTGTTGGAATTTCTTGTACATGGGCTT
TCGAGATGCAGTCACTGTTCTATCACAATCGGACAGGTGCCAAAGCTTAC
ACCACAAACTTAGATACCAAGGCTGTCCGTAATGCAGTCACTCTACATCC
GTTGAAAAGACCGGAATTCATGTACCGGTTACACACGCATTTCATGGAGC
TGAAGATTCAACAGACTTCTTATGATGTTGTGGTGCATCAAAGGCAACTC
GATATTGTAGAgaaacttttgacaaaagATCTTGACAAGCAGTCTGATGA
CAAATTGGCTCGTCTCAAAGATCGTAAAATGTTTAACCAGAAGATGTTAC
CTAAAGAAGTACCAGACTGGGAGATGTTTACTCCTAGAAAAGTGTATTCC
TACCAAACTAATGCACCGGAGATTGGAATGTTAAATCCAGTGAAAGATGG
ACTGAATCATGTCCTTGGTCAAACCATGTCCATTATCAATAAAGAGGCTC
GTAAAGTCTTACATCGCACGTTAGAGTTTAAGAGGTTAAACCACGGATAT
AAGAGATATCATCCTAGATACGGAATGCAGTATATGTTAGATTTGTTGAT
GAAATATCATCGACATGTCGGTTATAATAGACGTCGAATGACGGTTCATG
TCCGTCATCACGCTTATTTGCAGCAACCTTTTACTAGTTTAATGTATGCG
GAAGATGAGCAAACACGTGTTCAGGAACCAATCAATTTCTTGCTTCCGCT
AGCTGGAAGGTTGGTCCAATTTAAGAGATTTATGGGGAACTTTGAACGAA
TTTGTTTACACCAAGAGGAGAAGGCTTCTCTTACTATCCTTTACTTCCCT
GATGAGGGTCATAATTCAACCGAGCATAAAATTATTTTCGagtctttgaa
agaaaaatacacACGTGCTAATCTCAAGTGGATCAATATGGAAGGGCGCT
TCTCAAGGGCGCTTGCTTTGACGGTAGGCGTGGCTCAATTTGATAAAAct
tcattgttgtttttctgCGATGTTGATTTAGAGTTTGATAGCGCTTTTAT
GGAGCGTTGCCGATCAAATACTGTTTTAGATCAGCAGATTTACTATCCGA
TTNTAGAGTTTGATAGCGCTTTTATGGAGCGTTGCCGATCAAATACTGTT
TTAGATCAGCAGATTTATTATCCGATCGTGTTCAGCCAATTCGATCCAGA
GATGGCTAACTATAAACAGGAAAAGCCAGAATCTGTGTTTTATTATTCTA
AGGATACTGGTTTTTGGCGGAAATACGCGTTTGGGATCACATGTCAGTAT
CGTCgtgattttgatttgattggtgGTTTTGATACCACGATACAGGGTTG
GGGAATGGAGGATGTTGATTTATATGACCGATTCGTGTTAAGTGAAAAAC
ATAACGTTTTCCGCGCACCTGATCCCGGTTTAGTTCATATTTATCATCCT
GTACAATGCGATGAGAAAATAGCGGAGAAACAATTGAAAATGTGTTACGC
GTCGAAAGCGCAAACTTACGGGTCACAGAATAAGATTTACGAGGTGCTTT
ATGATCGAGGATATTTCAACCAAACGAAGAGTTTGGCGGATGATGAATTA
TTCTTCTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067885-exon-scaffold_477-1491911889:287354..288163 | TCONS_00067885-exon-scaffold_477-1491911889:287354..288163 | Clytia hemisphaerica | exon |
| TCONS_00067885-exon-scaffold_477-1510915933:287354..288163 | TCONS_00067885-exon-scaffold_477-1510915933:287354..288163 | Clytia hemisphaerica | exon |
| TCONS_00067885-exon-scaffold_477-1575043694:287354..288163 | TCONS_00067885-exon-scaffold_477-1575043694:287354..288163 | Clytia hemisphaerica | exon |
| TCONS_00067885-exon-scaffold_477-1491911889:288620..288842 | TCONS_00067885-exon-scaffold_477-1491911889:288620..288842 | Clytia hemisphaerica | exon |
| TCONS_00067885-exon-scaffold_477-1510915933:288620..288842 | TCONS_00067885-exon-scaffold_477-1510915933:288620..288842 | Clytia hemisphaerica | exon |
| TCONS_00067885-exon-scaffold_477-1575043694:288620..288842 | TCONS_00067885-exon-scaffold_477-1575043694:288620..288842 | Clytia hemisphaerica | exon |
| TCONS_00067885-exon-scaffold_477-1491911889:289076..292035 | TCONS_00067885-exon-scaffold_477-1491911889:289076..292035 | Clytia hemisphaerica | exon |
| TCONS_00067885-exon-scaffold_477-1510915933:289076..292035 | TCONS_00067885-exon-scaffold_477-1510915933:289076..292035 | Clytia hemisphaerica | exon |
| TCONS_00067885-exon-scaffold_477-1575043694:289076..292035 | TCONS_00067885-exon-scaffold_477-1575043694:289076..292035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:287354..292035 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008428 | Chond_GalNAc |
| IPR029044 | Nucleotide-diphossugar_trans |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008376 | acetylgalactosaminyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0032580 | Golgi cisterna membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0032580 |
Golgi cisterna membrane |
| molecular_function |
GO:0008376 |
acetylgalactosaminyltransferase activity |
Blast
BLAST of TCONS_00067885 vs. Swiss-Prot (Human)
Match: CHSS3 (Chondroitin sulfate synthase 3 OS=Homo sapiens GN=CHSY3 PE=2 SV=3) HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0 Identity = 311/751 (41.41%), Postives = 441/751 (58.72%), Query Frame = 1
Query: 214 AATSKNAALPKKK---LLFAGVMTAEKFLDTRAKAVYETWGKIMPGKMMFFASSSSHRDD-----LPVVSLTGVDDSYPPQRKSMMMLKYMHDNFIDDFEWFLRADDDVYIRTDKMEQFLRQLNSSDDLYIGQAGVGIQXXXXXXXXXXXDNFCMGGPGVIISASTLRKVVPYLEHCLQNLYTTHEDVEVGRCIKKFVGISCTWAFEMQSLFY----HNRTGAKAYTTNLDTKAVRNAVTLHPLKRPEFMYRLHTHFMELKIQQTSYDVVVHQRQLDIVEKLLTKDLDKQSDDKLARLKDRKMFNQKMLPKEVPDWEMFTPRKVYSYQTNAPEIGMLNPV-KDGLNHVLGQTMSIINKEARKVLHRTLEFKRLNHGYKRYHPRYGMQYMLDLLMKYHRHVGYNRRRMTVHVRHHAYLQQPFTSLMYAEDEQTRV-------------------------------------QEPINFLLPLAGRLVQFKRFMGNFERICLHQEEKASLTILYFP-DEGHNSTEHKIIFESLKEKYTRANLKWINMEGRFSRALALTVGVAQFDKTSLLFFCDVDLEFDSAFMERCRSNTVLDQQIYYPIXEFDSAFMERCRSNTVLDQQIYYPIVFSQFDPEMANYKQEKPESVFYYSKDTGFWRKYAFGITCQYRRDFDLIGGFDTTIQGWGMEDVDLYDRFVLSEKHNVFRAPDPGLVHIYHPVQCDEKIAEKQLKMCYASKAQTYGSQNKIYEVLYDR 2313
+ AA P + L+ GVMTA+K+L +RA A TW + +PG++ FF+S LPV++L GVDDSYPPQ+KS MM+KYMHD+++D +EWF+RADDDVYI+ DK+E+FLR LNSS LY+GQ G+G +E GKLGL G+NFCMGGPG+I S LR++VP++ CL+ +YTTHEDVEVGRC+++F G C W++EMQ LF+ HNR K Y +L + A+TLHP KRP + YRLH + + KI + Y + R+ ++ KL ++ K+ D +L + F Q EV +WE T + +YS N P L+ + + L+ + Q M +IN+ A K R ++FK + +GY+R +P +G++Y+LDLL+ Y RH G R++TV VR HAYLQQ F+ + E E+ V ++ ++ L+PL GR F RFM NFE +CL ++ L I+ F D G +S++H + + + KY +A + I M+G FSR L L + AQFD +LL FCDVDL F F++RCR NT+ QQ +YYPI+FSQ+DP++ N + F +SK TGFWR Y +GITC Y+ D GGFDT+IQGWG+EDVDLY++ +LS FR+ + G+VHI+HPV CD + KQ KMC SKA T+ S ++ E+ ++
Sbjct: 156 GSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEHNR---KGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYMLSRKISELRYRTIQLHRESALMSKLSNTEVSKE-DQQLGVIPSFNHF-QPRERNEVIEWEFLTGKLLYSAAENQPPRQSLSSILRTALDDTVLQVMEMINENA-KSRGRLIDFKEIQYGYRRVNPMHGVEYILDLLLLYKRHKG---RKLTVPVRRHAYLQQLFSKPFFRETEELDVNSLVESINSETQSFSFISNSLKILSSFQGAKEMGGHNEKKVHILVPLIGRYDIFLRFMENFENMCLIPKQNVKLVIILFSRDSGQDSSKHIELIKGYQNKYPKAEMTLIPMKGEFSRGLGLEMASAQFDNDTLLLFCDVDLIFREDFLQRCRDNTIQGQQ-------------------------VYYPIIFSQYDPKVTNGGNPPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILS-GLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLGSKASTFASTMQLAELWLEK 871
The following BLAST results are available for this feature:
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