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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067884 ID=TCONS_00067884|Name=TCONS_00067884|organism=Clytia hemisphaerica|type=transcript|length=1505bp
AGGGACGTAAAGAAAAAAGTGCGGACTTTAAAGAAGTGTGATAGTGTGAA
TGGTGTGATAGGTAGACGAATAAAAAAATGTGGACATTTGGCCTTTTAGG
CCAACCAAAAATcttctgagaaaaaaaatctagtgCAGCTATGAACTAAA
TACAAGAAttacaaaaactaaaaaaccaAAAACTATCTATTATACAGCCA
TTATACAATAACTCATAAAAAACAGCTATGGAAATGAATACAACAAAAAG
CCTTATATGCACCAACAAATAAATAATATATCTATAAATACAAAACACAA
AATNGAAGTATATGCACCAACAAATAAATAATATatcaataaatacaaaa
aaaacgaaatataCCTAATAGGTGTGACCTTTagacttcaaaaaattttt
aaagtgaAGATTTAATTCTATAATTCATGCTTAGCAAGACgtggatttta
aaagaaaaaatactactctaaaatttgcaaatttcgaccgagaaaaagtt
ttaaacaaaaaccGTTACAAAACAATTCTACTCCAAAGCAAATCCTCCCA
AAATTAGTATGAATAtatattggttgataatgttaaAGACTGAGGAAAAT
ATTATAAGAGGAGTTCATTGGAGTTTGAATTCCATCAAGCTTGGTCAAGT
TCATCCAAATCCACGTCTGTAATTTTTTCTACGttcaaagaatttttctt
ctccttttcTTTATTTGTGATATCAGGTCGTTCGTTGAAATCAATAAAGT
TATCATCGCCTTTCTTCTCAATAACTTTTtcgttattttctttattttcg
ctTTCCCTACTCAAGATATCAGGTCGTACATTGGCATCAATAACACTATG
GGTTTTCTTTTCAGTCGAATTTCCAACAGTTTCCCCACGAATACTACTGC
TTACACTTGCATTGGCTTTCACGGTCATTTTATTATCGNTCTTTTCAGTT
GAATTTCCAACAGTTTCCCCACGAATACTACTGCTTACACTTGCATTGGC
TTTCACGGTCATTTTATTATCGGAGTTGTTAAAAGACGTGCTTAGAGTAC
GATTAAGATTAAGTGTGCTTTTTATGGTTTGTTTACTCGGGGCAATTGtt
gttttcgaatttttctcaCCTGCTGTATCATTGAATCCACCTTCCAAATC
GTCGTCTTCTTCTGTGACCAGAGCCTTCTTGGTGGTTGTTGATAACTCTG
GCGACGCGGTTGAGGTATTAGTCTTGGTAAAAGAGGTTGATGTATTGGTT
GTGGTTTGTTCGCTATCAGCTTCTGTGGGTGTTGTATTTCTTGCATCACT
CGAAGTGACGTTGATAGCTTTGTGAACTACACTACTAGCACTATTATTAC
CAGAAACAGACGAGGCTTTGTTTAAGCTATCTACAACCCCAGATTCATGG
TTGACAGGCTTAGgttgttctttcttttcattaagAATCTCCTCTTTTAC
ATTTCTATCCTGTTCAGgaattttcttcctttgaaaactTCTTTTATGTT
GATCT Run BLAST on NCBI transcript from alignment at scaffold_477:264079..265636+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067884 ID=TCONS_00067884|Name=TCONS_00067884|organism=Clytia hemisphaerica|type=transcript|length=1558bp|location=Sequence derived from alignment at scaffold_477:264079..265636+ (Clytia hemisphaerica)
AGGGACGTAAAGAAAAAAGTGCGGACTTTAAAGAAGTGTGATAGTGTGAA
TGGTGTGATAGGTAGACGAATAAAAAAATGTGGACATTTGGCCTTTTAGG
CCAACCAAAAATcttctgagaaaaaaaatctagtgCAGCTATGAACTAAA
TACAAGAAttacaaaaactaaaaaaccaAAAACTATCTATTATACAGCCA
TTATACAATAACTCATAAAAAACAGCTATGGAAATGAATACAACAAAAAG
CCTTATATGCACCAACAAATAAATAATATATCTATAAATACAAAACACAA
AATNGAAGTATATGCACCAACAAATAAATAATATatcaataaatacaaaa
aaaacgaaatataCCTAATAGGTGTGACCTTTagacttcaaaaaattttt
aaagtgaAGATTTAATTCTATAATTCATGCTTAGCAAGACgtggatttta
aaagaaaaaatactactctaaaatttgcaaatttcgaccgagaaaaagtt
ttaaacaaaaaccGTTACAAAACAATTCTACTCCAAAGCAAATCCTCCCA
AAATTAGTATGAATAtatattggttgataatgttaaAGACTGAGGAAAAT
ATTATAAGAGGAGTTCATTGGAGTTTGAATTCCATCAAGCTTGGTCAAGT
TCATCCAAATCCACGTCTGTAATTTTTTCTACGttcaaagaatttttctt
ctccttttcTTTATTTGTGATATCAGGTCGTTCGTTGAAATCAATAAAGT
TATCATCGCCTTTCTTCTCAATAACTTTTtcgttattttctttattttcg
ctTTCCCTACTCAAGATATCAGGTCGTACATTGGCATCAATAACACTATG
GGTTTTCTTTTCAGTCGAATTTCCAACAGTTTCCCCACGAATACTACTGC
TTACACTTGCATTGGCTTTCACGGTCATTTTATTATCGNTCTTTTCAGTT
GAATTTCCAACAGTTTCCCCACGAATACTACTGCTTACACTTGCATTGGC
TTTCACGGTCATTTTATTATCGGAGTTGTTAAAAGACGTGCTTAGAGTAC
GATTAAGATTAAGTGTGCTTTTTATGGTTTGTTTACTCGGGGCAATTGtt
gttttcgaatttttctcaCCTGCTGTATCATTGAATCCACCTTCCAAATC
GTCGTCTTCTTCTGTGACCAGAGCCTTCTTGGTGGTTGTTGATAACTCTG
GCGACGCGGTTGAGGTATTAGTCTTGGTAAAAGAGGTTGATGTATTGGTT
GTGGTTTGTTCGCTATCAGCTTCTGTGGGTGTTGTATTTCTTGCATCACT
CGAAGTGACGTTGATAGCTTTGTGAACTACACTACTAGCACTATTATTAC
CAGAAACAGACGAGGCTTTGTTTAAGCTATCTACAACCCCAGATTCATGG
TTGACAGGCTTAGgttgttctttcttttcattaagAATCTCCTCTTTTAC
ATTTCTATCCTGTTCAGGAATNCTTTCTTTTCATTGAGAATCTCCTCTTT
TACATTTCTATCCTGTTCAGgaattttcttcctttgaaaactTCTTTTAT
GTTGATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067884-exon-scaffold_477-1491911889:264079..265528 | TCONS_00067884-exon-scaffold_477-1491911889:264079..265528 | Clytia hemisphaerica | exon |
| TCONS_00067884-exon-scaffold_477-1510915933:264079..265528 | TCONS_00067884-exon-scaffold_477-1510915933:264079..265528 | Clytia hemisphaerica | exon |
| TCONS_00067884-exon-scaffold_477-1575043694:264079..265528 | TCONS_00067884-exon-scaffold_477-1575043694:264079..265528 | Clytia hemisphaerica | exon |
| TCONS_00067884-exon-scaffold_477-1491911889:265582..265636 | TCONS_00067884-exon-scaffold_477-1491911889:265582..265636 | Clytia hemisphaerica | exon |
| TCONS_00067884-exon-scaffold_477-1510915933:265582..265636 | TCONS_00067884-exon-scaffold_477-1510915933:265582..265636 | Clytia hemisphaerica | exon |
| TCONS_00067884-exon-scaffold_477-1575043694:265582..265636 | TCONS_00067884-exon-scaffold_477-1575043694:265582..265636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:264079..265636 + |
Blast
The following BLAST results are available for this feature:
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