TCONS_00067855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067855
Unique NameTCONS_00067855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067855 ID=TCONS_00067855|Name=TCONS_00067855|organism=Clytia hemisphaerica|type=transcript|length=834bp
tgatagaaattcaacaaagacagatttgatttcttattttcgtgcacttt
aacttttaatctaattatgcggtcatgatgccgttatatcattagaatcg
cgagaaaattctgagcaagaaaatataggtatcttttggtataaaaagaG
GTctccccaaaatataagcccctaaAGTTTTACGCATAATTTgacctgaa
acaaaagaattccgTCATACCACGCtaattatacaacttttttgaagcaa
caacaaaagaaatccattagctcgaaacaaactcccttaagggcaaagga
cctggtatatgacgagccgtttgtcTATTGCTctgaagaagctgtttttc
catctctttacattcctctgggcTAACCCATGATCagtttcggggaaaat
tttgccCCAACCTCAGGTATCCCCAAAACAAGGCAATGGTTTCAGACAGA
CTATATAACATGCAATATAAAGGAagaaataaatttacaattaaCTAGTC
AAATATGGCAAATCATAGAGACGGTAAAACCAAAATGAACTAAATGACTA
ACAACATAGCCACAGACTAATTCTATTGATATTTTTACTTCATAATGTAG
TAAAAGCAAGCTATGGGAATTGAAGAATAGTTGCAGTAAAAACTTGCTCT
GCAGCGCGTGATATGATGTAATACAAACGACGAAAATCTTGCCAATTATC
TAGCCCGATACATTTAGGACTGAAACCAGACTACTGCCGAGATGTCTGGG
TTTTCTCTGGTTAGCCAAATATGTCAATGCCAAATTTAATAGCACTTCGT
CGTGCCAACGTCatgattattacttctctcattt
Run BLAST on NCBI

transcript from alignment at scaffold_476:334279..335112

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067855 ID=TCONS_00067855|Name=TCONS_00067855|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at scaffold_476:334279..335112 (Clytia hemisphaerica)
aaatgagagaagtaataatcatGACGTTGGCACGACGAAGTGCTATTAAA
TTTGGCATTGACATATTTGGCTAACCAGAGAAAACCCAGACATCTCGGCA
GTAGTCTGGTTTCAGTCCTAAATGTATCGGGCTAGATAATTGGCAAGATT
TTCGTCGTTTGTATTACATCATATCACGCGCTGCAGAGCAAGTTTTTACT
GCAACTATTCTTCAATTCCCATAGCTTGCTTTTACTACATTATGAAGTAA
AAATATCAATAGAATTAGTCTGTGGCTATGTTGTTAGTCATTTAGTTCAT
TTTGGTTTTACCGTCTCTATGATTTGCCATATTTGACTAGttaattgtaa
atttatttctTCCTTTATATTGCATGTTATATAGTCTGTCTGAAACCATT
GCCTTGTTTTGGGGATACCTGAGGTTGGggcaaaattttccccgaaactG
ATCATGGGTTAgcccagaggaatgtaaagagatggaaaaacagcttcttc
agAGCAATAgacaaacggctcgtcatataccaggtcctttgcccttaagg
gagtttgtttcgagctaatggatttcttttgttgttgcttcaaaaaagtt
gtataattaGCGTGGTATGAcggaattcttttgtttcaggtcAAATTATG
CGTAAAACTttaggggcttatattttggggagACCtctttttataccaaa
agatacctatattttcttgctcagaattttctcgcgattctaatgatata
acggcatcatgaccgcataattagattaaaagttaaagtgcacgaaaata
agaaatcaaatctgtctttgttgaatttctatca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042380XLOC_042380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067855-exon-scaffold_476-1491911889:334279..335112TCONS_00067855-exon-scaffold_476-1491911889:334279..335112Clytia hemisphaericaexon
TCONS_00067855-exon-scaffold_476-1510915933:334279..335112TCONS_00067855-exon-scaffold_476-1510915933:334279..335112Clytia hemisphaericaexon
TCONS_00067855-exon-scaffold_476-1575043694:334279..335112TCONS_00067855-exon-scaffold_476-1575043694:334279..335112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:334279..335112 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.966322	1.48431	3.11682	3.88172	2.51177	1.32457	1.38661	2.52794	0.719356	1.06651	0.747629	0.907913	0.755055	0.716462	0.386792	0.415087	0.681805	0.349414	0.301709	0.75772	0.974754	1.17802	1.37365	1.24409	0.0609454	0.543923	1.09218	1.15164	6.10224	6.15304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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