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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067850 ID=TCONS_00067850|Name=TCONS_00067850|organism=Clytia hemisphaerica|type=transcript|length=2133bp
ATTGTTATTCTTATCGTGATAATgtaaaaagctttattattaGAGTTAAC
CATATCTGAATTTGTTTTCACATTGATTTTGTCATGTGCACAGCCatcat
tttttatgaattttcaaaacacaagcAATGTTGATTATTTCTTTCAGATG
TATGATAATGGCAATATTTGAGCTATCACAAAACTTGAAGTCCTTTCTCC
ACGAACAACTTGATGTCAGTCTCTCAAATCTTGTAgataattttgttgaa
attgatgtAATTGAAAATTCAGTTTGTATCAAGAATGGTGGTGTTGTTGT
ATTTCATGCTGAACTCAATAATGATGCTGCAATTGGGAATATTGTGATCT
ATTTGAAAGCTGTAAACAGGGGATTTGTTTTGATCATTATCAGCAACAAG
GGTTGCCATGTTATTAATATGTTGGATAAAAAGGTACATTTTTGGTACAA
TGGGTGTAGCGTTGTGGTAGATGATTACTTGCAGAGGGGACACGATCAAA
TCATTATTCATCTCAGAGATAATCATTACATTATTactgattttgattgt
tgttCACATGACACAAGACATATGTCCAAAGATCGACACGAATCGTTTAT
GAAAAGTCAATCGCAAGGTTTTGCTAATCAAGCAGTTCTCAATTCACTTC
ATGATAAGATATCGAGAAGTCTTAATCATGGACAGATATTGAAATCTAAC
AACCGAGAGAAAGAAAACCTAATCAAACAATCTTGGAATGCCTTTAAAGA
TATATCACTGGACCAAAAGACTTCAACTCCAAAGTTTGCTTCCCTTGTTC
CTCTTTGCAATAAAAATAGTGTCTCACACCCACAGCATCACTCACTTGAG
CCACATGAAAAGTCCTTGGAAACCTTCAAAATGGTAAAGCACTGGATTCG
AAAGCTTAGTGACGgttttgtttttggttttgtGTTAAAGCATACATTTG
AAATGGCCCTTTGCAACTGTTCCACGTCACTCACTTTGAAAAACCAAACA
ACACATACTTTATCACTTTTGTCAAATAGGAAATTTACAAGTGTAGGAGA
GAGTTGGAAGTTGGAATCAGAAGAACTGTTTTTAACGTCAGTCAATTTTC
CTCTGCATGGAAGTCTGACATACTATGATTTTGATATAAGCATTCAATTT
TGTCATGATGGAcaggagaaaaaatttttctgtttCTATGTTGATAGTAT
CAAACTTGACCGGTTAAAGGTTTTGTCGCTAGAATGTGTTTCTAACAAAG
ACTTTTATATGAGGGACGAAGAAGATAAGTTGTGTTATGATTTACTTACT
TACAAAAAAGAATTTgttttggaatctaaaataaCTCATTTCCACAGCAT
TTTAAATCAACTGTGTCTCAAATTTAATTGTACTCAAATGACAGTAAACA
ATTTAACAATACTGAGACTAAAACATATCCAAggtgaaatttattttcat
ggtGGCAAAGTTCCTACAACAGGAACCATATTTGCTTTATCAAGAGAAAA
TGTTGCACTGCTTTTCTCAGAACTGAAGTCCATTCTTCCAGCCGACGTAT
CATTCAAGTTACAAATATCACCACAAAAGCTGAATGAAGCACGAAAAGTA
TTATTGGATGAAACTGAGTATCGTATGAGatctaatgacgtcatcattct
aGATTCACCTCCAGAACATCCAAACCAAGTCTTGCAAAATAAGATTCTCG
ATACAGATCGCATAATGAGTCAGATTTTTAGTTTATAGTTTTTTAACTAC
TTGATTTaacttttattagattttgcagTCTTTTTCTCTTAGAAGAGGTT
TTTAAAAGGTTCATTATATCAAAACCTAATCTTAACTAATACATTACTCA
GTTCTCCTTAGTTTCCAATATTATTCAAATAATGAGATCTGGCATTTACA
GCTTTAAGTAGCACATTAAAAAGTGTAATTTGAATTCCCACataggggcc
atccatatagtacgtatgCAGTGAAGGAGGGAGAGTgcgtttagcaaaag
cgtacatctattgtttaaatgacatcatttctattgttctctgcatacaa
ggggggagggggtatcaaatttttggaaaatctttgcgtacgtactatat
ggacggccccatACTCATGACTCTTTATGCTAG Run BLAST on NCBI protein sequence of TCONS_00067850-protein >TCONS_00067850-protein ID=TCONS_00067850-protein|Name=TCONS_00067850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp
MLIISFRCMIMAIFELSQNLKSFLHEQLDVSLSNLVDNFVEIDVIENSVC
IKNGGVVVFHAELNNDAAIGNIVIYLKAVNRGFVLIIISNKGCHVINMLD
KKVHFWYNGCSVVVDDYLQRGHDQIIIHLRDNHYIITDFDCCSHDTRHMS
KDRHESFMKSQSQGFANQAVLNSLHDKISRSLNHGQILKSNNREKENLIK
QSWNAFKDISLDQKTSTPKFASLVPLCNKNSVSHPQHHSLEPHEKSLETF
KMVKHWIRKLSDGFVFGFVLKHTFEMALCNCSTSLTLKNQTTHTLSLLSN
RKFTSVGESWKLESEELFLTSVNFPLHGSLTYYDFDISIQFCHDGQEKKF
FCFYVDSIKLDRLKVLSLECVSNKDFYMRDEEDKLCYDLLTYKKEFVLES
KITHFHSILNQLCLKFNCTQMTVNNLTILRLKHIQGEIYFHGGKVPTTGT
IFALSRENVALLFSELKSILPADVSFKLQISPQKLNEARKVLLDETEYRM
RSNDVIILDSPPEHPNQVLQNKILDTDRIMSQIFSL Run BLAST on NCBI transcript from alignment at scaffold_476:259312..261444 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067850 ID=TCONS_00067850|Name=TCONS_00067850|organism=Clytia hemisphaerica|type=transcript|length=2133bp|location=Sequence derived from alignment at scaffold_476:259312..261444 (Clytia hemisphaerica)
CTAGCATAAAGAGTCATGAGTatggggccgtccatatagtacgtacgcaa
agattttccaaaaatttgataccccctccccccttgtatgcagagaacaa
tagaaatgatgtcatttaaacaatagatgtacgcttttgctaaacgcACT
CTCCCTCCTTCACTGcatacgtactatatggatggcccctatGTGGGAAT
TCAAATTACACTTTTTAATGTGCTACTTAAAGCTGTAAATGCCAGATCTC
ATTATTTGAATAATATTGGAAACTAAGGAGAACTGAGTAATGTATTAGTT
AAGATTAGGTTTTGATATAATGAACCTTTTAAAAACCTCTTCTAAGAGAA
AAAGActgcaaaatctaataaaagttAAATCAAGTAGTTAAAAAACTATA
AACTAAAAATCTGACTCATTATGCGATCTGTATCGAGAATCTTATTTTGC
AAGACTTGGTTTGGATGTTCTGGAGGTGAATCtagaatgatgacgtcatt
agatCTCATACGATACTCAGTTTCATCCAATAATACTTTTCGTGCTTCAT
TCAGCTTTTGTGGTGATATTTGTAACTTGAATGATACGTCGGCTGGAAGA
ATGGACTTCAGTTCTGAGAAAAGCAGTGCAACATTTTCTCTTGATAAAGC
AAATATGGTTCCTGTTGTAGGAACTTTGCCaccatgaaaataaatttcac
cTTGGATATGTTTTAGTCTCAGTATTGTTAAATTGTTTACTGTCATTTGA
GTACAATTAAATTTGAGACACAGTTGATTTAAAATGCTGTGGAAATGAGt
tattttagattccaaaacAAATTCTTTTTTGTAAGTAAGTAAATCATAAC
ACAACTTATCTTCTTCGTCCCTCATATAAAAGTCTTTGTTAGAAACACAT
TCTAGCGACAAAACCTTTAACCGGTCAAGTTTGATACTATCAACATAGaa
acagaaaaattttttctcctgTCCATCATGACAAAATTGAATGCTTATAT
CAAAATCATAGTATGTCAGACTTCCATGCAGAGGAAAATTGACTGACGTT
AAAAACAGTTCTTCTGATTCCAACTTCCAACTCTCTCCTACACTTGTAAA
TTTCCTATTTGACAAAAGTGATAAAGTATGTGTTGTTTGGTTTTTCAAAG
TGAGTGACGTGGAACAGTTGCAAAGGGCCATTTCAAATGTATGCTTTAAC
acaaaaccaaaaacaaaacCGTCACTAAGCTTTCGAATCCAGTGCTTTAC
CATTTTGAAGGTTTCCAAGGACTTTTCATGTGGCTCAAGTGAGTGATGCT
GTGGGTGTGAGACACTATTTTTATTGCAAAGAGGAACAAGGGAAGCAAAC
TTTGGAGTTGAAGTCTTTTGGTCCAGTGATATATCTTTAAAGGCATTCCA
AGATTGTTTGATTAGGTTTTCTTTCTCTCGGTTGTTAGATTTCAATATCT
GTCCATGATTAAGACTTCTCGATATCTTATCATGAAGTGAATTGAGAACT
GCTTGATTAGCAAAACCTTGCGATTGACTTTTCATAAACGATTCGTGTCG
ATCTTTGGACATATGTCTTGTGTCATGTGaacaacaatcaaaatcagtAA
TAATGTAATGATTATCTCTGAGATGAATAATGATTTGATCGTGTCCCCTC
TGCAAGTAATCATCTACCACAACGCTACACCCATTGTACCAAAAATGTAC
CTTTTTATCCAACATATTAATAACATGGCAACCCTTGTTGCTGATAATGA
TCAAAACAAATCCCCTGTTTACAGCTTTCAAATAGATCACAATATTCCCA
ATTGCAGCATCATTATTGAGTTCAGCATGAAATACAACAACACCACCATT
CTTGATACAAACTGAATTTTCAATTacatcaatttcaacaaaattatcTA
CAAGATTTGAGAGACTGACATCAAGTTGTTCGTGGAGAAAGGACTTCAAG
TTTTGTGATAGCTCAAATATTGCCATTATCATACATCTGAAAGAAATAAT
CAACATTgcttgtgttttgaaaattcataaaaaatgatGGCTGTGCACAT
GACAAAATCAATGTGAAAACAAATTCAGATATGGTTAACTCtaataataa
agctttttacATTATCACGATAAGAATAACAAT Coding sequence (CDS) from alignment at scaffold_476:259312..261444 >TCONS_00067850 ID=TCONS_00067850|Name=TCONS_00067850|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_476:259312..261444 (Clytia hemisphaerica)
CTATAAACTAAAAATCTGACTCATTATGCGATCTGTATCGAGAATCTTAT
TTTGCAAGACTTGGTTTGGATGTTCTGGAGGTGAATCtagaatgatgacg
tcattagatCTCATACGATACTCAGTTTCATCCAATAATACTTTTCGTGC
TTCATTCAGCTTTTGTGGTGATATTTGTAACTTGAATGATACGTCGGCTG
GAAGAATGGACTTCAGTTCTGAGAAAAGCAGTGCAACATTTTCTCTTGAT
AAAGCAAATATGGTTCCTGTTGTAGGAACTTTGCCaccatgaaaataaat
ttcaccTTGGATATGTTTTAGTCTCAGTATTGTTAAATTGTTTACTGTCA
TTTGAGTACAATTAAATTTGAGACACAGTTGATTTAAAATGCTGTGGAAA
TGAGttattttagattccaaaacAAATTCTTTTTTGTAAGTAAGTAAATC
ATAACACAACTTATCTTCTTCGTCCCTCATATAAAAGTCTTTGTTAGAAA
CACATTCTAGCGACAAAACCTTTAACCGGTCAAGTTTGATACTATCAACA
TAGaaacagaaaaattttttctcctgTCCATCATGACAAAATTGAATGCT
TATATCAAAATCATAGTATGTCAGACTTCCATGCAGAGGAAAATTGACTG
ACGTTAAAAACAGTTCTTCTGATTCCAACTTCCAACTCTCTCCTACACTT
GTAAATTTCCTATTTGACAAAAGTGATAAAGTATGTGTTGTTTGGTTTTT
CAAAGTGAGTGACGTGGAACAGTTGCAAAGGGCCATTTCAAATGTATGCT
TTAACacaaaaccaaaaacaaaacCGTCACTAAGCTTTCGAATCCAGTGC
TTTACCATTTTGAAGGTTTCCAAGGACTTTTCATGTGGCTCAAGTGAGTG
ATGCTGTGGGTGTGAGACACTATTTTTATTGCAAAGAGGAACAAGGGAAG
CAAACTTTGGAGTTGAAGTCTTTTGGTCCAGTGATATATCTTTAAAGGCA
TTCCAAGATTGTTTGATTAGGTTTTCTTTCTCTCGGTTGTTAGATTTCAA
TATCTGTCCATGATTAAGACTTCTCGATATCTTATCATGAAGTGAATTGA
GAACTGCTTGATTAGCAAAACCTTGCGATTGACTTTTCATAAACGATTCG
TGTCGATCTTTGGACATATGTCTTGTGTCATGTGaacaacaatcaaaatc
agtAATAATGTAATGATTATCTCTGAGATGAATAATGATTTGATCGTGTC
CCCTCTGCAAGTAATCATCTACCACAACGCTACACCCATTGTACCAAAAA
TGTACCTTTTTATCCAACATATTAATAACATGGCAACCCTTGTTGCTGAT
AATGATCAAAACAAATCCCCTGTTTACAGCTTTCAAATAGATCACAATAT
TCCCAATTGCAGCATCATTATTGAGTTCAGCATGAAATACAACAACACCA
CCATTCTTGATACAAACTGAATTTTCAATTacatcaatttcaacaaaatt
atcTACAAGATTTGAGAGACTGACATCAAGTTGTTCGTGGAGAAAGGACT
TCAAGTTTTGTGATAGCTCAAATATTGCCATTATCATACATCTGAAAGAA
ATAATCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067850-exon-scaffold_476-1491911889:259312..261444 | TCONS_00067850-exon-scaffold_476-1491911889:259312..261444 | Clytia hemisphaerica | exon |
| TCONS_00067850-exon-scaffold_476-1510915933:259312..261444 | TCONS_00067850-exon-scaffold_476-1510915933:259312..261444 | Clytia hemisphaerica | exon |
| TCONS_00067850-exon-scaffold_476-1575043694:259312..261444 | TCONS_00067850-exon-scaffold_476-1575043694:259312..261444 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:259312..261444 . |
Blast
The following BLAST results are available for this feature:
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