|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067840 ID=TCONS_00067840|Name=TCONS_00067840|organism=Clytia hemisphaerica|type=transcript|length=2734bp
ATTTGATTCAACCAACTTATTGCAAGAAAAAAGCATAACAATTtatcatt
gaaataaaatttggtgatttttttttatggACGGAAAATAAATACCTGGa
agaaagattttgaagcattttaaaGGCAAAGTAATAAACGGAAAATAAGC
AAAGTTATTCTTAGCTTTAAAGAAGAGAAGATAGAGCAGTATCCTTGAAA
TTGAAAGGAAAAACGATTCGCATAAGCATCTAGTAATTTATCTGCAATTC
CAGCTAAGATGCCAATTACTCCTGAAGACTTTATCTGTTATCTAAGTATT
CTTAGCGATGAGATTAATCTTAAAGTTGGAATCCCACAACACTTCAAGGG
CGGAATCATCACAGGTACATCAGCTACAGTAGGCGGCTTTTGTGGCGGAC
CTTTAGGAGTCTTAATGGGTGGCGCCTTCGGAGGAACATTAGCTGCAATC
AGTTGTAAGGACCAACAGAAATATGTTAAAGATGTTTTATTAACATTGAA
ACGAGATGAAAGATATTGTATTTATGAATATTTCAAGACAAACTTATTGG
AACATGAATTTGGAAAATGTAAGAGTTATTCCGAGTTGAGCTCTCGATTA
GAACGAGATTTGGATTTGAAACATGACGTCATTCGAGTTTTAAAAGAGTT
TGTTGTTGGTCAATGGAAAGTGCAGATCATCGATGAACGTTTGGGACATC
ATAAATAAACAAATCAAAGTGTGTCTCAAtacaatgggccattccatttt
atattcatataaaaggattaaaatttttcttgggCTAATCTGAAGAAGAA
TTTCCAAtgggtaaaaaaatatttttaaagttccAGGGATAAAAAATGGT
TTTAGTTTGCCCTATCTCACTCTTAAGGTATGGAAAggaatttttctaag
aaattttctgcaaattttaccattttccagggggtatatcCTGTATGGAT
TTTAAATGGAACAACCCAATTTACAGCGGAAACAAAAAACGGCTGTAAAA
TTTGATAGACCACGACGACTATTCCACTTCCAAATACCTTTTCAGCGATT
AAAAAACCGCTATCTTAGTTGAATTCTATCATAAGTTACAGTATGATAAG
TAATAGACCCGTAATAGATGATTCATCAAGATCAGAGCTTTCATAAGATG
CTCtcgattctaaaaatgaaacttgAAGTCTATCAcgattcaaattttga
tattttcttacacccccttctcaatCTCAGCTGTCCAGTAGGATTTCTTA
AAACAAATGACCAAAACTCGATTGGGattgatgttttttatggctgggaa
tttaaattccattgttttcgagtcaCAAaactcagtggggatagaaaaaa
aagcacaatattttgcagtgaggattcgctcttcaagtaatttttttcag
ggacaaaaattagagtataattttccactggggacgatattttgatcaat
tttttaagtgggtctgtgagaagggggtgcagTTTTCTTGTACACATTGT
CAAAAGATACAGCATTTTTCTGTCTCCGATCCAGACCGACTTTATATAAT
CAGCAGTGTTTGACATTTATGGAACGACTCCCTGATTATCTGGAGTCTTT
CCCATAAACATGTTTTTATTGACTGTTTCTTTTATTAACCGGAATTGAAT
ATCGATAAGAGTCAACTTGCTACTTTTTTCTGAACAAACTGAAACCAAGG
AAATAAAAGCACGGATGGCTAGAAGTGAATCTCTTAGACAGGATTTGAAG
CCATTGAATCCTACCtaagttgcgcggcctagcgGATTTCACACAACTTA
Cagattaaaagtaaaatataccgccagattttctaaaatgtaccactcga
aaacaaagaaatcgctagattcaatgtgtcataaaaaatacggtgcacat
tttaaaggcttcactttttcttgcctgagaaaggttaattTTCTTGTCCT
TTGGGCTTCAATTTCATTAACTACAATTACGGTATTTGATGACGAATATA
CagtaaaaagtttttgtttcaatATCATCAATATCACCAGCATCATGGAA
TTGAAAtaattgaacaaaaataaaatgaaagatttcATGTCTACGAAGCA
TTCtggttacacgtttttatataaaaacgcCCAAAATCTTGAAGCCTTCA
AATGtaacttttcatttttaggcctaaatttgtacttaaaatttttctca
ttttttcaacattttgtacgtatttttgtgcaatttcttaagaaattggg
tgttttatagtccgcaaagtcttaaaatgttcttaacttgttcttaatat
tttggtcatcgaagccttatgttcgtATAATCATATCATACCTAGACTCA
TATTAAAATGAGAGCTTAAGAAGCATGGTGTACCGACTTCAACGTTGGTA
AATCAAAGGCTAGACTATAATAATTAAACTTGAGCTTTCCCAGTAAATTT
AAAACCCTTGTAAATAGAAATTTTACATTATCTAACCAAGAGACTTTATA
TCATAGATTATAACTTTCCATTTCTGCTAAAGCAGGTAACATTTCTTCCC
ACCCTCCATTTTATAACCAtacaacaggggggggggtagacgAACATTTC
CAAGGGGGCCAAAGAAGTGTTTCTCATTTTTCCAGGGTGTTAAACATAAC
TTTTAAgaattccagggggtaaaagactgattttagtttgtCTACCCTCA
CTTTAcggcaagaaaaaagttttttccaaggatc Run BLAST on NCBI protein sequence of TCONS_00067840-protein >TCONS_00067840-protein ID=TCONS_00067840-protein|Name=TCONS_00067840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MPITPEDFICYLSILSDEINLKVGIPQHFKGGIITGTSATVGGFCGGPLG
VLMGGAFGGTLAAISCKDQQKYVKDVLLTLKRDERYCIYEYFKTNLLEHE
FGKCKSYSELSSRLERDLDLKHDVIRVLKEFVVGQWKVQIIDERLGHHK Run BLAST on NCBI transcript from alignment at scaffold_476:152594..155327 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067840 ID=TCONS_00067840|Name=TCONS_00067840|organism=Clytia hemisphaerica|type=transcript|length=2734bp|location=Sequence derived from alignment at scaffold_476:152594..155327 (Clytia hemisphaerica)
gatccttggaaaaaacttttttcttgccgTAAAGTGAGGGTAGacaaact
aaaatcagtcttttaccccctggaattcTTAAAAGTTATGTTTAACACCC
TGGAAAAATGAGAAACACTTCTTTGGCCCCCTTGGAAATGTTcgtctacc
cccccccctgttgtaTGGTTATAAAATGGAGGGTGGGAAGAAATGTTACC
TGCTTTAGCAGAAATGGAAAGTTATAATCTATGATATAAAGTCTCTTGGT
TAGATAATGTAAAATTTCTATTTACAAGGGTTTTAAATTTACTGGGAAAG
CTCAAGTTTAATTATTATAGTCTAGCCTTTGATTTACCAACGTTGAAGTC
GGTACACCATGCTTCTTAAGCTCTCATTTTAATATGAGTCTAGGTATGAT
ATGATTATacgaacataaggcttcgatgaccaaaatattaagaacaagtt
aagaacattttaagactttgcggactataaaacacccaatttcttaagaa
attgcacaaaaatacgtacaaaatgttgaaaaaatgagaaaaattttaag
tacaaatttaggcctaaaaatgaaaagttaCATTTGAAGGCTTCAAGATT
TTGGgcgtttttatataaaaacgtgtaaccaGAATGCTTCGTAGACATga
aatctttcattttatttttgttcaattaTTTCAATTCCATGATGCTGGTG
ATATTGATGATattgaaacaaaaactttttactGTATATTCGTCATCAAA
TACCGTAATTGTAGTTAATGAAATTGAAGCCCAAAGGACAAGAAaattaa
cctttctcaggcaagaaaaagtgaagcctttaaaatgtgcaccgtatttt
ttatgacacattgaatctagcgatttctttgttttcgagtggtacatttt
agaaaatctggcggtatattttacttttaatctGTAAGTTGTGTGAAATC
cgctaggccgcgcaacttaGGTAGGATTCAATGGCTTCAAATCCTGTCTA
AGAGATTCACTTCTAGCCATCCGTGCTTTTATTTCCTTGGTTTCAGTTTG
TTCAGAAAAAAGTAGCAAGTTGACTCTTATCGATATTCAATTCCGGTTAA
TAAAAGAAACAGTCAATAAAAACATGTTTATGGGAAAGACTCCAGATAAT
CAGGGAGTCGTTCCATAAATGTCAAACACTGCTGATTATATAAAGTCGGT
CTGGATCGGAGACAGAAAAATGCTGTATCTTTTGACAATGTGTACAAGAA
AActgcacccccttctcacagacccacttaaaaaattgatcaaaatatcg
tccccagtggaaaattatactctaatttttgtccctgaaaaaaattactt
gaagagcgaatcctcactgcaaaatattgtgcttttttttctatccccac
tgagttTTGtgactcgaaaacaatggaatttaaattcccagccataaaaa
acatcaatCCCAATCGAGTTTTGGTCATTTGTTTTAAGAAATCCTACTGG
ACAGCTGAGattgagaagggggtgtaagaaaatatcaaaatttgaatcgT
GATAGACTTcaagtttcatttttagaatcgaGAGCATCTTATGAAAGCTC
TGATCTTGATGAATCATCTATTACGGGTCTATTACTTATCATACTGTAAC
TTATGATAGAATTCAACTAAGATAGCGGTTTTTTAATCGCTGAAAAGGTA
TTTGGAAGTGGAATAGTCGTCGTGGTCTATCAAATTTTACAGCCGTTTTT
TGTTTCCGCTGTAAATTGGGTTGTTCCATTTAAAATCCATACAGgatata
ccccctggaaaatggtaaaatttgcagaaaatttcttagaaaaattccTT
TCCATACCTTAAGAGTGAGATAGGGCAAACTAAAACCATTTTTTATCCCT
ggaactttaaaaatatttttttacccaTTGGAAATTCTTCTTCAGATTAG
cccaagaaaaattttaatccttttatatgaatataaaatggaatggccca
ttgtaTTGAGACACACTTTGATTTGTTTATTTATGATGTCCCAAACGTTC
ATCGATGATCTGCACTTTCCATTGACCAACAACAAACTCTTTTAAAACTC
GAATGACGTCATGTTTCAAATCCAAATCTCGTTCTAATCGAGAGCTCAAC
TCGGAATAACTCTTACATTTTCCAAATTCATGTTCCAATAAGTTTGTCTT
GAAATATTCATAAATACAATATCTTTCATCTCGTTTCAATGTTAATAAAA
CATCTTTAACATATTTCTGTTGGTCCTTACAACTGATTGCAGCTAATGTT
CCTCCGAAGGCGCCACCCATTAAGACTCCTAAAGGTCCGCCACAAAAGCC
GCCTACTGTAGCTGATGTACCTGTGATGATTCCGCCCTTGAAGTGTTGTG
GGATTCCAACTTTAAGATTAATCTCATCGCTAAGAATACTTAGATAACAG
ATAAAGTCTTCAGGAGTAATTGGCATCTTAGCTGGAATTGCAGATAAATT
ACTAGATGCTTATGCGAATCGTTTTTCCTTTCAATTTCAAGGATACTGCT
CTATCTTCTCTTCTTTAAAGCTAAGAATAACTTTGCTTATTTTCCGTTTA
TTACTTTGCCtttaaaatgcttcaaaatctttcttCCAGGTATTTATTTT
CCGTccataaaaaaaaatcaccaaattttatttcaatgataAATTGTTAT
GCTTTTTTCTTGCAATAAGTTGGTTGAATCAAAT Coding sequence (CDS) from alignment at scaffold_476:152594..155327 >TCONS_00067840 ID=TCONS_00067840|Name=TCONS_00067840|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_476:152594..155327 (Clytia hemisphaerica)
TTATTTATGATGTCCCAAACGTTCATCGATGATCTGCACTTTCCATTGAC
CAACAACAAACTCTTTTAAAACTCGAATGACGTCATGTTTCAAATCCAAA
TCTCGTTCTAATCGAGAGCTCAACTCGGAATAACTCTTACATTTTCCAAA
TTCATGTTCCAATAAGTTTGTCTTGAAATATTCATAAATACAATATCTTT
CATCTCGTTTCAATGTTAATAAAACATCTTTAACATATTTCTGTTGGTCC
TTACAACTGATTGCAGCTAATGTTCCTCCGAAGGCGCCACCCATTAAGAC
TCCTAAAGGTCCGCCACAAAAGCCGCCTACTGTAGCTGATGTACCTGTGA
TGATTCCGCCCTTGAAGTGTTGTGGGATTCCAACTTTAAGATTAATCTCA
TCGCTAAGAATACTTAGATAACAGATAAAGTCTTCAGGAGTAATTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067840-exon-scaffold_476-1491911889:152594..155327 | TCONS_00067840-exon-scaffold_476-1491911889:152594..155327 | Clytia hemisphaerica | exon |
| TCONS_00067840-exon-scaffold_476-1510915933:152594..155327 | TCONS_00067840-exon-scaffold_476-1510915933:152594..155327 | Clytia hemisphaerica | exon |
| TCONS_00067840-exon-scaffold_476-1575043694:152594..155327 | TCONS_00067840-exon-scaffold_476-1575043694:152594..155327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:152594..155327 . |
Blast
The following BLAST results are available for this feature:
|
