TCONS_00067839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067839
Unique NameTCONS_00067839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1103

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067839 ID=TCONS_00067839|Name=TCONS_00067839|organism=Clytia hemisphaerica|type=transcript|length=1103bp
CTTTATAATATGTTTCGTTaagactaaaaatttagaaaaggtATGATACA
AAAAATGAGATGATACATGGTACCTAAGAAATAAAATCGTAACAAAAGGT
TTGAAAAGATAAGATTAccagactggagtcgtttataatgcgtgtaatac
agtagtataggcgttatatgataatacgataaaaAAGGTAACATTACTAA
AATTACTAAAACCATAACGATGTCCGGATTGGAAATAATTTAAAGTTTAT
ATAAAAGCGTGACCCCATCATCAACACTCAGCATAGCCAAGTCAAATCGC
TCATCTTTGCCCAGTTTACGGTTCAGCGCATCAAGACAAATGGCGCTCTC
CTTGTAACGTGGCGTCCAGTCGCCGTGAGGGTCGAGAACGGAGCCCCGTT
GAAGGACGTTATCAATAACGATGATGCCACCTTGACGTAGGAGGACGTGC
GATCGATCAACGTAGTCTGAATATTCAGGCTTGTGTGCATCAATGTacac
aaaatcaaaagttcCTGACTGGTCATCTTTAATTAGTTGATCCATCGTGT
CTAAAGCTGGTCCgatcttgattttgattttgtctCGGACACCGGCTTTT
TCGAAGAACGGGTATCCATGTTTGACGTAGTCCTCATTGATATCCAGAGC
TATAACTTCACCGTCGTCCGGAATTGTTATAGCGCAGTTCAAAGCGTTGT
ACCCAGTGAATGTTCCGACCTCCAAACATTTCTTACACCGGCTCATTTTT
AGTAAAATACGGATCAACTGACATGCGGTAATGTCGGAAATCATGACGGA
TCTTTCGACGTTCTTCATTGTGTATTCGCGTAATTCTTTCAAGATTTCTG
GTTCACGTTGTGACGTTTCAGCGACGTATTTCTCGACCGGCGTAAGGCCG
TCCTTGTAAGGATCAATAGGCATATTGATGATAGAGGTTGTTGCGTGTAc
caaaaaattgtcttttctTCTTTGTCAGTTATACCAACCAGAGATGGTCG
TAATGCAAAGTCCAACAAGCAATAAAtaaactttttcacaaaatttgatC
TTTGTAAATGTAGCAAGTTTATACCACTTCTTTGATCGTCTTTGCTAGTG
CAC
Run BLAST on NCBI

protein sequence of TCONS_00067839-protein

>TCONS_00067839-protein ID=TCONS_00067839-protein|Name=TCONS_00067839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MPIDPYKDGLTPVEKYVAETSQREPEILKELREYTMKNVERSVMISDITA
CQLIRILLKMSRCKKCLEVGTFTGYNALNCAITIPDDGEVIALDINEDYV
KHGYPFFEKAGVRDKIKIKIGPALDTMDQLIKDDQSGTFDFVYIDAHKPE
YSDYVDRSHVLLRQGGIIVIDNVLQRGSVLDPHGDWTPRYKESAICLDAL
NRKLGKDERFDLAMLSVDDGVTLLYKL
Run BLAST on NCBI

transcript from alignment at scaffold_476:144763..145865

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067839 ID=TCONS_00067839|Name=TCONS_00067839|organism=Clytia hemisphaerica|type=transcript|length=1103bp|location=Sequence derived from alignment at scaffold_476:144763..145865 (Clytia hemisphaerica)
GTGCACTAGCAAAGACGATCAAAGAAGTGGTATAAACTTGCTACATTTAC
AAAGatcaaattttgtgaaaaagtttaTTTATTGCTTGTTGGACTTTGCA
TTACGACCATCTCTGGTTGGTATAACTGACAAAGAagaaaagacaatttt
ttggTACACGCAACAACCTCTATCATCAATATGCCTATTGATCCTTACAA
GGACGGCCTTACGCCGGTCGAGAAATACGTCGCTGAAACGTCACAACGTG
AACCAGAAATCTTGAAAGAATTACGCGAATACACAATGAAGAACGTCGAA
AGATCCGTCATGATTTCCGACATTACCGCATGTCAGTTGATCCGTATTTT
ACTAAAAATGAGCCGGTGTAAGAAATGTTTGGAGGTCGGAACATTCACTG
GGTACAACGCTTTGAACTGCGCTATAACAATTCCGGACGACGGTGAAGTT
ATAGCTCTGGATATCAATGAGGACTACGTCAAACATGGATACCCGTTCTT
CGAAAAAGCCGGTGTCCGagacaaaatcaaaatcaagatcGGACCAGCTT
TAGACACGATGGATCAACTAATTAAAGATGACCAGTCAGgaacttttgat
tttgtgtACATTGATGCACACAAGCCTGAATATTCAGACTACGTTGATCG
ATCGCACGTCCTCCTACGTCAAGGTGGCATCATCGTTATTGATAACGTCC
TTCAACGGGGCTCCGTTCTCGACCCTCACGGCGACTGGACGCCACGTTAC
AAGGAGAGCGCCATTTGTCTTGATGCGCTGAACCGTAAACTGGGCAAAGA
TGAGCGATTTGACTTGGCTATGCTGAGTGTTGATGATGGGGTCACGCTTT
TATATAAACTTTAAATTATTTCCAATCCGGACATCGTTATGGTTTTAGTA
ATTTTAGTAATGTTACCTTttttatcgtattatcatataacgcctatact
actgtattacacgcattataaacgactccagtctggTAATCTTATCTTTT
CAAACCTTTTGTTACGATTTTATTTCTTAGGTACCATGTATCATCTCATT
TTTTGTATCATaccttttctaaatttttagtcttAACGAAACATATTATA
AAG

Coding sequence (CDS) from alignment at scaffold_476:144763..145865

>TCONS_00067839 ID=TCONS_00067839|Name=TCONS_00067839|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_476:144763..145865 (Clytia hemisphaerica)
ATGCCTATTGATCCTTACAAGGACGGCCTTACGCCGGTCGAGAAATACGT
CGCTGAAACGTCACAACGTGAACCAGAAATCTTGAAAGAATTACGCGAAT
ACACAATGAAGAACGTCGAAAGATCCGTCATGATTTCCGACATTACCGCA
TGTCAGTTGATCCGTATTTTACTAAAAATGAGCCGGTGTAAGAAATGTTT
GGAGGTCGGAACATTCACTGGGTACAACGCTTTGAACTGCGCTATAACAA
TTCCGGACGACGGTGAAGTTATAGCTCTGGATATCAATGAGGACTACGTC
AAACATGGATACCCGTTCTTCGAAAAAGCCGGTGTCCGagacaaaatcaa
aatcaagatcGGACCAGCTTTAGACACGATGGATCAACTAATTAAAGATG
ACCAGTCAGgaacttttgattttgtgtACATTGATGCACACAAGCCTGAA
TATTCAGACTACGTTGATCGATCGCACGTCCTCCTACGTCAAGGTGGCAT
CATCGTTATTGATAACGTCCTTCAACGGGGCTCCGTTCTCGACCCTCACG
GCGACTGGACGCCACGTTACAAGGAGAGCGCCATTTGTCTTGATGCGCTG
AACCGTAAACTGGGCAAAGATGAGCGATTTGACTTGGCTATGCTGAGTGT
TGATGATGGGGTCACGCTTTTATATAAACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042364XLOC_042364Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067839-proteinTCONS_00067839-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067839-exon-scaffold_476-1491911889:144763..145865TCONS_00067839-exon-scaffold_476-1491911889:144763..145865Clytia hemisphaericaexon
TCONS_00067839-exon-scaffold_476-1510915933:144763..145865TCONS_00067839-exon-scaffold_476-1510915933:144763..145865Clytia hemisphaericaexon
TCONS_00067839-exon-scaffold_476-1575043694:144763..145865TCONS_00067839-exon-scaffold_476-1575043694:144763..145865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:144763..145865 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.646725	0.448291	1.07301	0.676315	0.405051	1.26091	0.454914	2.793	5.32621	22.4281	8.15003	13.1163	50.5534	49.6215	30.339	22.6545	14.7444	11.8081	42.4249	58.3451	3.79011	5.43036	2.40114	3.36892	0.687735	1.22991	0.990651	1.3983	11.425	12.8485
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002935O-MeTrfase_3
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008171O-methyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008171 O-methyltransferase activity
Blast
[Close]
BLAST of TCONS_00067839 vs. Swiss-Prot (Human)
Match: CMTD1 (Catechol O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.247e-35
Identity = 76/213 (35.68%), Postives = 126/213 (59.15%), Query Frame = -1 
Query:  243 KYVAETSQREPEILKELREYTMKNVERSVMISDITACQLIRILLKMSRCKKCLEVGTFTGYNALNCAITIPDDGEVIALDINEDYVKHGYPFFEKAGVRDKIKIKIGPALDTMDQLIKDDQSGTFDFVYIDAHKPEYSDYVDRSHVLLRQGGIIVIDNVLQRGSVLDPHGDWTPRYKESAICLDALNRKLGKDERFDLAMLSVDDGVTLLYKL 881
            +Y+   S RE   L+ LR  T++  +   M++   A QL+  L ++ + KK L++GTFTGY+AL  A+ +P DG V+  +++    + G P + +A    KI +++ PAL+T+D+L+   ++GTFD   +DA K   S Y +R   LLR GGI+ +  VL RG VL P     P+   +A C+  LN ++ +D R  +++L + DG+TL +K+
Sbjct:   56 QYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQA-QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQP-----PKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262
The following BLAST results are available for this feature:
BLAST of TCONS_00067839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMTD13.247e-3535.68Catechol O-methyltransferase domain-containing pro... [more]
back to top