TCONS_00067838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067838
Unique NameTCONS_00067838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067838 ID=TCONS_00067838|Name=TCONS_00067838|organism=Clytia hemisphaerica|type=transcript|length=500bp
ttttatttttagtaactaaatatattattgaaaaaatgttaGTGAGAAGA
TTTGTgaaccaaaaagtgtttttagaagTACTACGACCAGCTTCAAGTTT
CAATTTGTCATGTCATCGAAAGTATTCCGTCAAGAAAACACCTTCAGCTA
TCACTCTTATGGATCATCTAAAACAAAGGATCAAGgCAACTGGACCCATA
ACAGTAGCAAGCTATATGAAAGAAGCCTTAACAAATCCAGTATGGGGTTA
CTACATGAAGACAGATGTGTTTGGTAAAGAAGGTGATTTCACTACATCTC
CTGAAATCAGTCAAATCTTCGGAGAGTTGATAGCGATTTGGCTTGTTCTT
CAATGGTCAGAAATGAACAAACCCACACCCTTTCAACTGGTGGAACTTGG
TCCTGGCAGAGGAACTCTGATGTCCGATATCGTAAGACTTAGGGAGAAAA
CACCAAACCAAACGCTGTGCAGCAACACGACCTTCTTTGAAGCTATCGCC
Run BLAST on NCBI

transcript from alignment at scaffold_476:254714..259218-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067838 ID=TCONS_00067838|Name=TCONS_00067838|organism=Clytia hemisphaerica|type=transcript|length=4505bp|location=Sequence derived from alignment at scaffold_476:254714..259218- (Clytia hemisphaerica)
TTTTATTTTTAGTAACTAAATATATTATTGAAAAAATGTTAGTGAGAAGA
TTTGTGAACCAAAAAGTGTTTTTAGAAGGTAATGTTTTTTGTTTATGATC
TGTGAGGTTAGCATATAATTTCGATTTTAATTATACAATTCTCAATGTAC
CTTTAATTCTGTTATTCATTATTTCAATATAGTACTACGACCAGCTTCAA
GTTTCAATTTGTCATGTCATCGAAAGTATTCCGTCAAGAAAACACCTTCA
GCTATCACTCTTATGGATCATCTAAAACAAAGGATCAAGGTTTCTTTTCT
TAACATGCACATAATTAGACAACTGTTTCAAAATTTATGATTTTGTATAA
TGATTAGAGATTTTTGATTATATTTTGATTCTTTCCTGTAGAGAGTCCTA
AATAGTTACCCTTAGAGAGTGAAATAGAACAGGCCTAGAACGACAATTTT
CGAAAGTTTTCTCGTCCCTAGAGAGACTTTTTATTTACTTTTCATGATTT
TCATACCTTTAAAAACCTAAATGAGATCCAAATAGGGCAAAATCCTTAGA
GGGACTTTTCTATACTTTTTGTTGTTTTTGTGTAGAGAAATTTGGGTAGG
TCAAACCTAGCACCTATTTATCCTATTGCAAAGTTACACCTTACCCATTT
GTTGGTTGTTCTAAAAATTATGTTTTATATTTTCAGGCAACTGGACCCAT
AACAGTAGCAAGCTATATGAAAGAAGCCTTAACAAATCCAGTATGGGTAA
GAAAAATTTTCACTCATGTAAACCCCTGGTGATTAAAATATCTTGAACTT
TAAAAAAAAATCAATAAAAGTCAATTTTGATTTATCTTAAACATTGTAGT
TGAACAGTAAAAACATTTCCGTTTCAACGATTTTTGATGTTTCTTCATCA
CGGTTTGTCTTTATCACTTTAAACTGTGATAGAAGACGAATCAAATTCGC
TGCCTTTACTTTTCAATCAATGACAAAAATAATTGGTACTATGTCGGTAC
AAACTTTAGTTTTTTTATGTTCATTGTGAAGCTCCTTTCTTCAATTTTTG
TAATATTTTGTGAACAGGGTTACTACATGAAGACAGATGTGTTTGGTAAA
GAAGGTGATTTCACTACATCTCCTGAAATCAGTCAAATCTTCGGAGAGGT
AAATATAGTTAAGCTCTTTTATCAGATGAGATATTTTTTCTAAACATCTA
GTTTTCTGTAACATTGCTGACTTGTAGGATTAATTGTTACTTAGGGAAAC
ATTTTATCAGTACAAAAATCGAGGTTAAGATCTGTTTTATCCCATGCATT
TTGTATACATGGTCAAAATACAAAAACATGAGTAGTCAATAAATTGGTCA
GAAAGTACATTATAGGTGTGTCAATTTACCTAGCTAGAAACTGTAGATTA
TCCATGAAAATTGGCAAAAAACTCGAACTTGTTTTTTTGGACCAGGTTCT
TTATTTAGTGGTCAACAAAAGGCTTTTTGAGATTTTCAAAAAGAATGAAA
TTTCTAAAATGCTATTTGTAGGTGTAGGCAATGACGAATACCGATTCTCG
ATTTACATCATTCTTTTTGTAAAACAATTTACACATTGTTATTTCTTCAG
TTGATAGCGATTTGGCTTGTTCTTCAATGGTCAGAAATGAACAAACCCAC
ACCCTTTCAACTGGTGGAACTTGGTCCTGGCAGAGGAACTCTGATGTCCG
ATATCGTAAGAGTAAGTGTCCGAATAATTTATTTCTCGATCATACTCTTT
CAAAATGAACTCGATACCTGTTGCTTATTAATTTCAATATAAACTACTTT
TACGGGAGTATGTTTTCTAACGAGATGTGGTGGTCAGAACTGATTACAAT
ACAATGCCTTAAACCATGGGACAAGCTGGAGTTTTTACAAGCTCTTACGT
GATTTGGTTGGTCGTTAAGTTAATTTCATTACTTTTTCTAAAGAACGCGT
CATCTCTATTACTTCAAATGACCAATTAGTGAAGTATCTTATAAAAACTC
CAGCTCATCCTTAAACCATATTCAGACGTTACGGTTCTACATCACTCTGG
TTTTTATGTTTTTTGGTAAGAAGTTTTCATTTTGGTTTCGAAACATTTCG
GAGCAAGAAAACGGGACATTTCCATTTACGTTTTGCTTTTTAACGTATTC
CTTTCTAAGTTTCGAATATTGGTATTCCACAGTCGTTTCATTTCGGAACG
ATGTGGTGTGGACATAGTCTTAAAGATTTTCTAAAAGCATGTCATCATTT
TTGATAACAGTTAGCCGTAACGGATTTGAAATTCTTTTGACAGTTGAATA
AAAATATGTCGCCAGTATATAGTTATATAATCTGTGAAGTTCAATCAGCG
TTTTTCTGCTCATTTGTAACATTGCACGAAGTAACTGGTAAGCTTCAATT
TTGCAGAAAGAATCTAGGGTAGAGTCTCATTCATCATTTGGTCATTACTT
TATTTATTCTATGGTTGAATAGTTCAGGGCTGGCGTTTGTGGTCTTGTTT
GCCAACTGCCAATGAGTTCGTGACTGCAACCATTTCCATCACAGAGAGGC
TAAAATTTCTTATGGAAATCTTATTTAAACCTCTGTAGATTTAGATAGTT
TAAAACTCGGCAGATAAGAAGAAAATAGACTTGGATAAGTTTAAAACTGA
TCTAAATTGTCCCTACAAATTACTGACAGACATTAGAAAGTTAGAATGAA
GATTCCGATGTTTTCTTTTTTCGTTCAAAAAAAAAAAAATGAGCATGTTT
CCAAAACACCACATGACTCCGCATTGAAAATCTATATACAGTGCATTTGC
ATAAATTATTCAAATTCTAATCATAAAATAAAATAAACTAGTGCATAAAT
TAATATGATATGTGGAGGAGATTGAACGATTGAATATCACTCTTCTTGTC
TTTGGTACCGTTACCGTTAAATATTTTAAAACCTAATTGTTAACTTCCCT
CCTGTTGATTGTTCCATGTACCTTTAGTTTGTACAAACTATCCTGCTTGC
TCCGTTATCAAAGTCGGCTGGGTTTCTCCAATATTCTTGCAAATTACTGC
CCCCACAATTCGAAGGCGCGCCACAAAAAGTATTCTTAAGAGGGTTTTCA
GCGTTCGTTAGCCATACTCTTCCTAACAGATCGCATCAGTTTGTTCAAGC
CAGCACCAGCTAGCGTTCTGCCATCTGAATGATACAGCTTCGCTTCTCTC
TGGATAATATTCTGTTGGAAGACCACTCTTTGTAGACGAGCTTGAAACAA
TCCGCTAGCAAGCTGTGTGTTAAAATGAGAAGCGTTTCTATCCATGGAGG
CGTTATCGAGGCGTGGCAGAAGGGCGTACACAAAGACTTGGCCAGAGATT
CGTTTGAGTAGGTTACGAATACTATTGAGCATGACCAAAGCTAGTTCTGA
AGGTGATGCAGTTCTCTGTTCTAAGTTATTTGCTCCCACCAAGATGCAAA
CGCTTGTGACGTCAGTGTTAGGGTTTTCGATGACGAAATCGGTCAACTTT
TCGAATGCTGTTTCGATGGTGTAATGCGATTTGCAGAAACTCTCCACGCG
TTTGGTGGTATCGGATACCAAGCGTTTTTGTGAGATCATATCAAGGGTGC
TGTCTCCTAACAGAACACAGACTTCTGGTCGAATCTCACTTTGGTGGAGC
TCTTCCAGCAGACTAGTTGTCGAGCCTCGACGTCTGACGGACGCTTTAAT
TTTGCCATTTGTATTGAGCGAGGAGCTTGAATGACTTCTAGGGATGGTCG
CTTTCTTTGATTTTGCAGAGCTAGGCGCTGATCTCGCACTATTTGAATTG
TAGCCTAGTTTCTTGGTTTGTTCGGCCATTGTGCTGTTGCGACGAGCGAT
ACGTGACGTCAGAGAACGCGACGTCAGCGGATCTTCGAAGTTGATTTTGA
TAAAATCTTTGCAGAGTTTGATGTCATTTTTGACGACCATAATTTCTTCA
TGTAAACGAATTTTCAACTGAAGAAGTTCGTCACTGATCTCCTTTCCATG
GTGGAAAGATTTCCAATCGTCTCGATAGTGACCGCTCGGCTTCATCGCTT
TCAAATTGTAAATCTTCTCCATGCTTTCGACCGTACGGTCTTGTATGGCC
GCTTGATCATTATCACGGATAGTTTCCTCGATGGAGACATATCTTTTCTT
ATCTGTCACCACGTACATGATATTCTCCATGATGTTCAAAACTTGAGCCC
GCTCTGTCATACTGAGTCGTGATTGGTCGAGATTGTTGCGCAAATGACGT
AAGAAAACATCCTTGTGAAGCTTGGAATCCCAGGTGTGAAGCTGTCGGCA
TAAGTCTAACGCCATGATGACTTGTTGGTTCTGATTCTTTGTCGCCATTT
TGATTCGAAAGTGAGAGTTCTTTCACTGTTGAAATACAACAAGAATTCTT
CTGCCAGAAATTGAACTTTTTTGGTTTCTGTGTTTCTTCTAGCTTAGGGA
GAAAACACCAAACCAAACGCTGTGCAGCAACACGACCTTCTTTGAAGCTA
TCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042363XLOC_042363Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067838-exon-scaffold_476-1575043694:259141..259218TCONS_00067838-exon-scaffold_476-1575043694:259141..259218Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1575043694:258930..259036TCONS_00067838-exon-scaffold_476-1575043694:258930..259036Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1575043694:258473..258532TCONS_00067838-exon-scaffold_476-1575043694:258473..258532Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1575043694:258071..258151TCONS_00067838-exon-scaffold_476-1575043694:258071..258151Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1575043694:257508..257618TCONS_00067838-exon-scaffold_476-1575043694:257508..257618Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1575043694:254714..254776TCONS_00067838-exon-scaffold_476-1575043694:254714..254776Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1510915933:259141..259218TCONS_00067838-exon-scaffold_476-1510915933:259141..259218Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1510915933:258930..259036TCONS_00067838-exon-scaffold_476-1510915933:258930..259036Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1510915933:258473..258532TCONS_00067838-exon-scaffold_476-1510915933:258473..258532Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1510915933:258071..258151TCONS_00067838-exon-scaffold_476-1510915933:258071..258151Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1510915933:257508..257618TCONS_00067838-exon-scaffold_476-1510915933:257508..257618Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1510915933:254714..254776TCONS_00067838-exon-scaffold_476-1510915933:254714..254776Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1491911889:259141..259218TCONS_00067838-exon-scaffold_476-1491911889:259141..259218Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1491911889:258930..259036TCONS_00067838-exon-scaffold_476-1491911889:258930..259036Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1491911889:258473..258532TCONS_00067838-exon-scaffold_476-1491911889:258473..258532Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1491911889:258071..258151TCONS_00067838-exon-scaffold_476-1491911889:258071..258151Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1491911889:257508..257618TCONS_00067838-exon-scaffold_476-1491911889:257508..257618Clytia hemisphaericaexon
TCONS_00067838-exon-scaffold_476-1491911889:254714..254776TCONS_00067838-exon-scaffold_476-1491911889:254714..254776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:254714..259218 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.77634	1.69564	4.45921	2.36359	4.77125	5.17195	2.56074	3.27441	2.79168	3.1673	0.148333	4.22856	3.53608	6.05035	3.02104	3.5092	3.02317	4.30482	3.00595	2.09231	4.04314	2.57666	4.2293	2.69436	1.42261	5.38482	1.69925	1.094	3.77026	0.779615
Blast
[Close]
BLAST of TCONS_00067838 vs. Swiss-Prot (Human)
Match: NDUF7 (Protein arginine methyltransferase NDUFAF7, mitochondrial OS=Homo sapiens GN=NDUFAF7 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.957e-37
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 3 
Query:  156 LMDHLKQRIKATGPITVASYMKEALTNPVWGYYMKTDVFGKEGDFTTSPEISQIFGELIAIWLVLQWSEMNKPTPFQLVELGPGRGTLMSDIVRL 440
            ++ HL  +IK+TGPITVA YMKE LTNP  GYY+  D+ G++GDF TSPEISQIFGEL+ IW + +W    K T FQLVELGPGRGTL+ DI+R+
Sbjct:   43 MLRHLMYKIKSTGPITVAEYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGELLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRV 137
The following BLAST results are available for this feature:
BLAST of TCONS_00067838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUF74.957e-3763.16Protein arginine methyltransferase NDUFAF7, mitoch... [more]
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