|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067832 ID=TCONS_00067832|Name=TCONS_00067832|organism=Clytia hemisphaerica|type=transcript|length=1155bp
CAAATCATACACCAAAACCATTCGATACCCTTCTTTTAATGATGCCATCT
TTCTTTGACAACTGTTGAAGAAAGCTGTATaaattatttcatattttgat
tccCTGATATCAAATTGTATCTTCTTTGGAGCTTTCCCTTCAGAATACAC
TATAATTTCATGGCCTTTGAAGACAGATGGCAGTTGCATCAGAAGTGTGG
CAAAGCATGTTTTATCTGTCTcgttgttattttcaaaaacaaacccATCA
TCATTNGTGTTTTAAAGCTGTAACATTTAAGCTACTGTACCTTTTCAAGA
AGAAGGGAGGCCTTCTGGATACTTTGCTGAAACATTTGGTCATTGGGAGG
TTGACAATCACCAATCCATAACAAATCATACATCAAAACAATTCGATACC
CTTCTTTTAATGATGTCATCTTTCTTTGACAACTGTTGAAGAAAGCTGTG
TaaattatttcatattttgattcaCTGATATCAATATTCTTTGGAGCTTT
CCCTTAGAATACACAATAACTTTATGACCTTTGAAGACAGATGGCAGTTG
CATCAGAAGTGTGGCAAAGCATGTTTTATCTGTCTcgttgttattttcaa
aaacaaacccATCATCATTATCATCGTTATCATCACTCTCTTGATACAGC
ATAAGTTTGTTGATTTTAACCTGAACATTTTCGAGTTTGTAGTCTAATTC
TTCTGCAACTTTAGACAAGACATCATCCAGAACTTCATggtattttgaat
tttgtaatGTAAATTGGTTTGGTTGAAGTGTCCAAGAATTTCTGATGAGA
GAAATCNCAAGTTTGTTGATTTTAGCCTGGACATTTTCGAGTTTGTAGTC
TAATTCTTCTGCAACTTTAGACAAGACATCATCCAGAACTTCATggtatt
ttgaattttgtaatGTAAATTGGTTTGGTTGAAGTGTCCAAGAATAGAGC
CTTGGTTCAtcttttgatggaaatgatttGTGTGCAATGTTGGTTATTTT
CTTCGCCTGTTCACTGCATATGGGATAGCTGGTTGAACTTTCAATTCCTT
CAATCTGTAGTCCAGGAATTGGCGACCTTTCGATGATGTCATTGAAAACA
AATTCAGGAGGTTTCTCTTTGAATGTCAACAATAAATCCTTTAATTCCTC
CATCT Run BLAST on NCBI transcript from alignment at scaffold_476:184051..185440- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067832 ID=TCONS_00067832|Name=TCONS_00067832|organism=Clytia hemisphaerica|type=transcript|length=1390bp|location=Sequence derived from alignment at scaffold_476:184051..185440- (Clytia hemisphaerica)
CAAATCATACACCAAAACCATTCGATACCCTTCTTTTAATGATGCCATCT
TTCTTTGACAACTGTTGAAGAAAGCTGTATAAATTATTTCATATTTTGAT
TCCCTGATATCAAATTGTATCTTCTTTGGAGCTTTCCCTTCAGAATACAC
TATAATTTCATGGCCTTTGAAGACAGATGGCAGTTGCATCAGAAGTGTGG
CAAAGCATGTTTTATCTGTCTCGTTGTTATTTTCAAAAACAAACCCATCA
TCATTNGTGTTTTAAAGCTGTAACATTTAAGCTACTGTACCTTTTCAAGA
AGAAGGGAGGCCTTCTGGATACTTTGCTGAAACATTTGGTCATTGGGAGG
TTGACAATCACCAATCCATAACAAATCATACATCAAAACAATTCGATACC
CTTCTTTTAATGATGTCATCTTTCTTTGACAACTGTTGAAGAAAGCTGTG
TAAATTATTTCATATTTTGATTCACTGATATCAATATTCTTTGGAGCTTT
CCCTTAGAATACACAATAACTTTATGACCTTTGAAGACAGATGGCAGTTG
CATCAGAAGTGTGGCAAAGCATGTTTTATCTGTCTCGTTGTTATTTTCAA
AAACAAACCCATCATCATTATCATCGTTATCATCACTCTCTTGATACAGC
ATAAGTTTGTTGATTTTAACCTGAACATTTTCGAGTTTGTAGTCTAATTC
TTCTGCAACTTTAGACAAGACATCATCCAGAACTTCATGGTATTTTGAAT
TTTGTAATGTAAATTGGTTTGGTTGAAGTGTCCAAGAATTTCTGATGAGA
GAAATCNCAAGTTTGTTGATTTTAGCCTGGACATTTTCGAGTTTGTAGTC
TAATTCTTCTGCAACTTTAGACAAGACATCATCCAGAACTTCATGGTATT
TTGAATTTTGTAATGTAAATTGGTTTGGTTGAAGTGTCCAAGAATTTCTG
ATGAGAGAAATCAAGAAATGACGATGAGATTTCTACAGCATTATTACAAT
TACTAATAAAAATAGGCCTATTTTGCTTGCTTTAAATTAATTAATGAAAT
AATTAATTTAATTTCCATGCATATTTTCTGTTTGTTTGTTTTTTTACTTT
TTCACATCAAAGTTCACATGATGTTCTTTGATCGAAGAAATATAGCCTAA
GAAAAAAGAGGAATTGTGAAAGAATAACATAGAGCCTTGGTTCATCTTTT
GATGGAAATGATTTGTGTGCAATGTTGGTTATTTTCTTCGCCTGTTCACT
GCATATGGGATAGCTGGTTGAACTTTCAATTCCTTCAATCTGTAGTCCAG
GAATTGGCGACCTTTCGATGATGTCATTGAAAACAAATTCAGGAGGTTTC
TCTTTGAATGTCAACAATAAATCCTTTAATTCCTCCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067832-exon-scaffold_476-1575043694:184498..185440 | TCONS_00067832-exon-scaffold_476-1575043694:184498..185440 | Clytia hemisphaerica | exon |
| TCONS_00067832-exon-scaffold_476-1575043694:184051..184262 | TCONS_00067832-exon-scaffold_476-1575043694:184051..184262 | Clytia hemisphaerica | exon |
| TCONS_00067832-exon-scaffold_476-1510915933:184498..185440 | TCONS_00067832-exon-scaffold_476-1510915933:184498..185440 | Clytia hemisphaerica | exon |
| TCONS_00067832-exon-scaffold_476-1510915933:184051..184262 | TCONS_00067832-exon-scaffold_476-1510915933:184051..184262 | Clytia hemisphaerica | exon |
| TCONS_00067832-exon-scaffold_476-1491911889:184498..185440 | TCONS_00067832-exon-scaffold_476-1491911889:184498..185440 | Clytia hemisphaerica | exon |
| TCONS_00067832-exon-scaffold_476-1491911889:184051..184262 | TCONS_00067832-exon-scaffold_476-1491911889:184051..184262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:184051..185440 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005121 | Fdx_antiC-bd |
Blast
The following BLAST results are available for this feature:
|
