TCONS_00067822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067822
Unique NameTCONS_00067822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067822 ID=TCONS_00067822|Name=TCONS_00067822|organism=Clytia hemisphaerica|type=transcript|length=1495bp
cactttttacgTCCTTCAGTAGACTTTCTCTCATTTCGCCCCTTAACCGC
CTAAGCAAAACCTTAAGTTAATACCGTTAGAAAGGGTGTTGAATTCTTAA
GATTAAGATATTAAATGATTTTGCAATACTTTGGTAACTTGAATTTTTGT
AAAGCTAATGAGACGATTTGACCAGAGTCCAAAAAATACATTAAGTTGCA
ActaatttcaacatttctttAAAACTCTATATCAAAAGTTCAGTCTTTTG
AAAATTCCGTCCAGTCGAGCCAACGATCGAAGATTAATTTATAATGTTTT
GCAAAAAGTGTACAAAACTTTCTTGAATCATCTGTTAGTTTCAAAGGACG
ATGTTCGCCATTCTTAAGCATTTCTGTGATCTTGAAATATCCTTCCTTAT
TCAACGGCAATTTGATTTGCTTCAAGAAGTCATGCGCATAACCTGTTTCA
CCACGAAACAAAATGTGATTGGCTAATTTGTACCTTTCATTAATTCCCAA
AAACTTGTTTGCATAAGTATGGCAAAGATTCAAAGCTTGAATGAAAACAC
ACTGTATAAGCGTTCGGTCCACTTGAATGACACGAGCTGCTAGATCCTCA
AGAGGCACTAAAGGAATGGTCAGCTGCTTAAAATCATTGATAGCTAAACA
ACCAACAATACTTAGACCATAACTCCATTCTTTTTCAATTGCATATTCTT
CTTTACAATAAACATAACATGGTTTGTAAACTAAATCGTGCTCGATTAAT
CCTGCTATTCTGCTTGCACTCAACCCAGTTAAAACTGTATAAACGAGGCA
ACCTGGAGATAAATGACCTTTGATCTCCGTAGCGACTTTCACTATTTGAT
TTGGCGGGAAAGTGAAAAACAACACATCAACTTCGCTGGCTGCATATTTG
TTGTCTTGTTTGCATTCAACCCCGAGGGAAGTAAAATCTTCAACTAATGC
ACCAGGGCGTTTAGTAGACAGCTTGATATCCTCAGACATTAAGGGTGTAT
ACTCCAAAAGCGATTTAACCAAGTGTATACCAAGCCGCCCACATCCAATA
ACACCCACCTTGATCCGCCCAACTTTTTGttgcttcattttctttatttc
tttgtcATTAGAGGGTGGATTTTGTTGAATGTAAAGTTGACGTCGAATTT
CGGACAGTATCGAGACTGTGAAGACAGCATGCGCAACATGATTCACCGTT
ATCATTTGGCTTCGTTTCCGTAAGAAAAGTAATTCCCGCTCTCTACCTGA
AATGCCGGAATCGAAGCGAAGTGAAGACAAATTACTAATGATTCCTTCTT
GTTGGTCTTGGCTGGCTGTAGATGCATTGCTTTCAATTGCTCGTAATGAG
ATTGTGGTTTGTTTTGAAAGCATGTTTTGACTATCTTTGTCGTTCGGAGA
TGCTAACGAATTTTGCTGACTCATCACTAATTCAGTTGAAGACGCCATCT
TTGAATGGATATCAAATTGTTTTTACGATATCACGAAAAAGCCTT
Run BLAST on NCBI

transcript from alignment at scaffold_476:66058..68531-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067822 ID=TCONS_00067822|Name=TCONS_00067822|organism=Clytia hemisphaerica|type=transcript|length=2474bp|location=Sequence derived from alignment at scaffold_476:66058..68531- (Clytia hemisphaerica)
CACTTTTTACGTCCTTCAGTAGACTTTCTCTCATTTCGCCCCTTAACCGC
CTAAGCAAAACCTTAAGTTAATACCGTTAGAAAGGGTGTTGAATTCTTAA
GATTAAGATATTAAATGATTTTGCAATACTTTGGTAACTTGAATTTTTGT
AAAGCTAATGAGACGATTTGACCAGAGTCCAAAAAATACATTAAGTTGCA
ACTAATTTCAACATTTCTTTAAAACTCTATATCAAAAGTTCAGTCTTTTG
AAAATTCCGTCCAGTCGAGCCAACGATCGAAGATTAATTTATAATGTTTT
GCAAAAAGTGTACAAAACTTTCTTGAATCATCTGTTAGTTTCAAAGGACG
ATGTTCGCCATTCTTAAGCATTTCTGTGATCTTGAAATATCCTTCCTTAT
TCAACGGCAATTTGATTTGCTTCAAGAAGTCATGCGCATAACCTGTTTCA
CCACGAAACAAAATGTGATTGGCTAATTTGTACCTTTCATTAATTCCCAA
AAACTTGTTTGCATAAGTATGGCAAAGATTCAAAGCTTGAATGAAAACAC
ACTGTATAAGCGTTCGGTCCACTTGAATGACACGAGCTGCTAGATCCTCA
AGAGGCACTAAAGGAATGGTCAGCTGCTTAAAATCATTGATAGCTAAACA
ACCAACAATACTTAGACCATAACTCCATTCTTTTTCAATTGCATATTCTT
CTTTACAATAAACATAACATGGTTTGTAAACTAAATCGTGCTCGATTAAT
CCTGCTATTCTGCTTGCACTCAACCCAGTTAAAACTGTATAAACGAGGCA
ACCTGGAGATAAATGACCTTTGATCTCCGTAGCGACTTTCACTATTTGAT
TTGGCGGGAAAGTGAAAAACAACACATCAACTTCGCTGGCTGCATATTTG
TTGTCTTGTTTGCATTCAACCCCGAGGGAAGTAAAATCTTCAACTAATGC
ACCAGGGCGTTTAGTAGACAGCTTGATATCCTCAGACATTAAGGGTGTAT
ACTCCAAAAGCGATTTAACCAAGTGTATACCAAGCCGCCCACATCCAATA
ACACCCACCTTGATCCGCCCAACTTTTTGTTGCTTCATTTTCTTTATTTC
TTTGTCATTAGAGGGTGGATTTTGTTGAATGTAAAGTTGACGTCGAATTT
CGGACAGTATCGAGACTGTGAAGACAGCATGCGCAACATGATTCACCGTT
ATCATTTGGCTTCGTTTCCGTAAGAAAAGTAATTCCCGCTCTCTACCTGA
AATGCCGGAATCGAAGCGAAGTGAAGACAAATTACTAATGATTCCTTCTT
GTTGGTCTTGGCTGGCTGTAGATGCATTGCTTTCAATTGCTCGTAATGAG
ATTGTGGTTTGTTTTGAAAGCATGTTTTGACTATCTTTGTCGTTCGGAGA
TGCTAACGAATTTTGCTGACTCATCACTAATTCAGTTGAAGACGCCATCT
TTGAATGGATATATCTATAAATAACAAAGCAAGAGATATGTACTGATGAT
GTAAACTTACACAAGCTAGTCAAAAGCTTTTTGGAATTTGGAATATTTAG
AAATTCTTTCCAACAAAAATTTGGAGAATCTTTAAAATACTTTTTTGTGA
TAATATATACATTTAGCTTATAAGCTCCCTGATAGTCATGGTTAGGCTCG
AATGTCACATTATACCATAGTAACCCTAGTGCCCCTCTTCCCGGGATTTT
TTTTTGTAAAAATAAAGTAGACTTTCTAAATTTTTCCAAGTCTGCAATTT
CTACTTTATCTTATAAGTTTATTGCTTCCCATTTGGGTTTCACTGTAGCA
ATGAGTACAATCAAATTCAGATGTTTATGTTAATGTCTCATATCGTACCA
TATAATATGACGATGTGACACCAATGAGAGGAGGAAAACATAATATCAAA
TTGCAAACAATCTACTTTTTGGTAACCAAAGCAACATAAACTTTGTATGG
ATGTTAGCTTTCATACCACATTACAAAATGTAACGGTTCAGGTTTCATTA
AGCCTATCATTTTTAAAAGAAGCACGCAAAGTTTGGGTAAAAAAAAACAG
CAATACACCTTTTCGACCGTAGTCGCGCGGTCTCGCGCGTGCCAATTTAT
TATTTAATTATCCCCCTAAACTCGATCCAATCCTTTTTTTTACACCTTTT
CTATTGTCTATTGTCGAAAAAAAGACTGGGATTTGGGACGGTTTTAGGGT
GGTAAAACGGACAAAAAATGCCCGCACGACAATTGGCGGCTACGGTCGCA
AAGGTGTATTAAGCAATAAACAAAATGTTGTTGCTACAGTTGACGCTTTC
TAATTCGAAGTTCTACTATTCGATACACTCCCTTCTTCGATGAGCGTCAA
CTGTAGGCATCAATCAAAGAAACAACTTTTCCTTTGAACCTTACAGCTGT
TGTTGATAAACAGATGCCGTATGTACACAATATATACTTACCAAATTGTT
TTTACGATATCACGAAAAAGCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042356XLOC_042356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067822-exon-scaffold_476-1575043694:67070..68531TCONS_00067822-exon-scaffold_476-1575043694:67070..68531Clytia hemisphaericaexon
TCONS_00067822-exon-scaffold_476-1575043694:66058..66090TCONS_00067822-exon-scaffold_476-1575043694:66058..66090Clytia hemisphaericaexon
TCONS_00067822-exon-scaffold_476-1510915933:67070..68531TCONS_00067822-exon-scaffold_476-1510915933:67070..68531Clytia hemisphaericaexon
TCONS_00067822-exon-scaffold_476-1510915933:66058..66090TCONS_00067822-exon-scaffold_476-1510915933:66058..66090Clytia hemisphaericaexon
TCONS_00067822-exon-scaffold_476-1491911889:67070..68531TCONS_00067822-exon-scaffold_476-1491911889:67070..68531Clytia hemisphaericaexon
TCONS_00067822-exon-scaffold_476-1491911889:66058..66090TCONS_00067822-exon-scaffold_476-1491911889:66058..66090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:66058..68531 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0487938	0	0	0.053394	0.0321994	0.0774358	0	1.02935	0	0.254255	0.930594	5.6711e-07	0.196462	0.687094	0.32724	1.36356	0	0	1.01061e-06	0	0	0	0	0.651264	0.667853	2.31358	0.10142	0.320148	0	0.5354
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028939P5C_Rdtase_cat_N
IPR016040NAD(P)-bd_dom
Blast
[Close]
BLAST of TCONS_00067822 vs. Swiss-Prot (Human)
Match: NXRD1 (NADP-dependent oxidoreductase domain-containing protein 1 OS=Homo sapiens GN=NOXRED1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.012e-28
Identity = 74/257 (28.79%), Postives = 124/257 (48.25%), Query Frame = -3 
Query:  522 IISNLSSLRFDSGISGRERELLFLRKRSQMITVNHVAHAVFTVSILSEIRRQLYIQQNPPSNDKEIKKMKQQKVGRIKVGVIGCGRLGIHLVKSLLEYTPLMSEDIKLSTKRPGALVEDFTSLGVECKQDNKYAASEVDVLFFTFPPNQIVKVATEIKGHLSPGCLVYTVLTGLSASRIAGLIEHDLVYKPCYVYCKEEYAIEKEWSYGLSIVGCLAINDFKQLTIPLVPLEDLAARVIQVDRTLIQCVFIQALNLC 1292
            ++ +L SL+F+ G+   +R  L+L+ RS+ + +   AHA F   +L  +R  L   +N  S    I  +        KVG+IG G LG  L  +LL+  P+ +E +++ST+RP  L E    LG++C   N    S  DV+F    P+Q+  +  EI   L    +VY+ +  +   R+  L+ H  + +P Y Y ++  ++   W     ++  L      Q T P  P     A  I ++   ++ VF  ALN+C
Sbjct:    3 MLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASL--NKNQSSRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGE-LQKLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKLLLNHTNILRPQYQYDEDSVSV---WGANKGVIAALQDPTILQATCPYSP-----AGGIILNIKWLEGVFYAALNIC 248
The following BLAST results are available for this feature:
BLAST of TCONS_00067822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NXRD12.012e-2828.79NADP-dependent oxidoreductase domain-containing pr... [more]
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