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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067816 ID=TCONS_00067816|Name=TCONS_00067816|organism=Clytia hemisphaerica|type=transcript|length=3426bp
AGATGATCTACGTTATTCGAAATCCAAGAGATGTAATCATATCTTATCTC
AACCATTTGCGAATATTACATGGGTATGAAGGAGATTTGCAAACACTGCT
TGATTTATTCTTAAAAGATTTAGGACCGCATTGGGGTCCTTATTTCAAAC
ATGTTTTAAGTTATTGGAACAAGAAATCAGAGCTACCAAATTTGTTGATT
ACAAGGTATGAAGAGATGCAAGCAGATTTACCAAAAGTTATTAAAAGAAT
TGCCAGCTTCCTAGAAGTTACAATATCAGATGAAGATGTACTGAGATTGT
GTGACCatgtatcttttgaaaaaatgaaagctAATCCTATGGTTAACAAG
GACGAATATTTTGAGGAAAGGAAAAAAGCGATGAACAATGGTTATGCTGG
CAAATTTATTAACAAAGGTAAAAGTGGAACGTGGAAAGAATATCTAACCG
ATGAAATGGTTCAACGATTTGAACAGTGGGAAGAGAAATGGTTGAAAGAT
ACTGATCTTAAATTTGTTTATGAAGTTTGAAGTGTATTCagtcaaattct
tttttattacaACGTTTGTGTAGGGAGACCAAAATCCTTTATTTTTGAAT
CCGTCAATCTCGTACCCCAGAGCCATTcaccattttttttattttactga
aaaACGTGGATATAGTTTAGCACTGCGCTGTATCAATTTTAGGGCGGTGG
GCGTTTTTTGAAAGACTTGGGCAGGTTATTTTCGGTGCCCAAGAAGGGCT
GTGGGCGTGAAATAGTCGaaataaaagtgaaagtgaaaaaagtCAAGACC
AtttttttcgagtgatttgacCCTCGCGATAAACTTTAATATATTATTAT
TAGCAGGTTGATTTGCGCGAAATTGTTACGAAAGtgttaaaaaattgtca
aaaaactttttttttaaatttaaacttCTTTTAGTGTTTTTGTAACCTCT
AGGGGTCcagaaaaaatattaacagcTTTCCAACTTCATGAACCTTTTAA
CTttcagaaaaattcaattttttcacttaCAGCCAGTTTTTTCACAGTCT
ATGCGAAGAGTCAGTGAATGCATTTTTGCACTTGAGTAGCAAAAATCTGC
AATTTCAACctcaatatttttcattgtGGCAACAAACTTTGCCACTGTGG
CAAAAATTTTACCACATGCCCCTGAACCTTTTTTTGAGGGGACCTCTCat
acaaaatttgagctcaaaatttcaaagtgatattcattatttattatttt
gagcagtggcaaaatttgatgacgtcaccgatggtggtgacgtcatcatt
gatgacaaaattttgatagcAGGTGCCAATACATATTATAAacacactgt
gaaaattttatgaaaaattattaaatctaatcaaaagttatcaaaaaatt
tccttcaggGAAAATACTTGCGAAGGGTTAAGCAAATTTTGTGACACACT
CTCTTTATTAACACGAGACTCTTTCCCAAAGgtattttaaggaaaaagtt
ttttccagTTCTCACTTTTATgaataatttcattttagtgaaaagtaaaa
ttgcataaaaagattagaaaaacTTTTGATCATGTCTACCAATGGAGAGG
AAAGATGGCAAGCAATCAAATATCAGccacaaaatcagaaaaatttccat
CAATGGATACACCAAAAGTTacgaaaattgaaacaaactcACCAAAAAAG
TTTCGACGTAATGAATAAGTACTTTCCAGTGGAGAAGactatgacagaaa
gtatggaAAAGATGACAGATGATGATATCAAAGTCGCAGCAAAAGAATGT
GGTTTCCATCCATCAATTACTGAACTTCTGGTAGCAATTCAAACGGATCC
AATCATACACATGCTTTTTCATCACATGTATAAAGAACAAACAGTTCATC
TACCACCCGGAAAACTGTGCATCCAGTCCTGGCAAGAGGCATTAATTGTG
ATCAACGAATGTATAAATGAAGCTCCTGAATTTGATAATGAAAATCCAAT
CACTGCACCACTGTATTGTATTTTCAGTAGCCCAATAGCAACACCAGTTG
GAAATACCtgttttttgcatgaaaaagtGAATGCTTTGATGaaggaaatt
ttgattgaatgGGGTAAGTACTTAACAAGCAAATCTTCTTGTTACGTATT
AACTGATGCACCTAAAGGTTGGTTCAGCATTAAAGCCCTAGAAGCCATGC
CGAATTTCAATGAAACATATGTCTGCGATCCATCAAAGCCTTTTTGGGGT
TTCACTTCTTGGGACGATTTTTTTGTTCGCAAGTTTAAAGATGGAGCAAG
ATCAGtggatgatgaagaagatgatTGCATAATTGTTAATCCATGCGAAG
CAACCCCTTACAAAGTTAAATGGAACGTCAAAAAGTATGATCAATTTTGG
ATAAAGGAACAAAATTATTCTATGGAGTTCGTCTTGAACAAGAACCCATT
GGCAGCTGCTTTTAATGGGGGAACAATTTATCAGGGCTTATTATGCGCTA
CCAATTATCATAGATTTCATAGCCCTGTTAATGGCATTATCCACCATCTC
GATTTGGTTGAAGGAAGTTATTTTTCACAACCGTACATAGAAGGTGGATA
TCCAATCTTGAGAGACGTACTACCATACTTAGCGCATGTCGCAACAAGAG
GAATCTTTTATATCAAAGCCGACAATCCAAATATTGGTTTGATTGCGTTT
ATAGCAGTTGGAATGACTGAAGTATCAACAGTTGAAATGACAGTAAAAGT
TGGAGATCGCGTGAAAAAGGGTCACGAAATCGGAATGTTTCATTATGGAG
GATCGAACTTCCTGTTAGTTTTTAGAGGGGAAGTTAACATCAAATTCGAT
GACCAATTATTGCAAGGCTTAAATTCTGGTAACATCAAATTGAATAAACG
AATTGGCCATGTTCTTGCACCTGAAATAAAATAACAAGAAGGCGCCTTAT
GatgaaaaactttataaaatccTAGAAATATTCTTATCTTCATATTCATT
TATCATTTATTGTTAATCTAATTTATTAAtttaatctttttaatttaatt
cttttcaggtgaagagccaaatgtaaattttggaaatgccagaaatatat
cattattattattattgttatctCAGGAGTAAATATTAGAGGAAATATGA
CGTCAAAATTAGTGAAACAACTCAATCCGAAAGTGAACCTCGGTTGTTCG
TAAAATGATATAATTTCAAAAGTATGGTCAATAATTTAACATATCTTACT
TTATATTGATATAGAATTTGTAATTCATGAATATAAAagaattgttttta
aattttctcagcAATACTAGTAGTTTCATGTTATTCACGATCATCAGTTG
ATTTGAAATGACTATAAAGGCCGGTCGGTCTccacaggttttttccaaac
atACCACTATAGAAATTGATTAAAGG Run BLAST on NCBI transcript from alignment at scaffold_476:300674..304994+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067816 ID=TCONS_00067816|Name=TCONS_00067816|organism=Clytia hemisphaerica|type=transcript|length=4321bp|location=Sequence derived from alignment at scaffold_476:300674..304994+ (Clytia hemisphaerica)
AGATGATCTACGTTATTCGAAATCCAAGAGATGTAATCATATCTTATCTC
AACCATTTGCGAATATTACATGGGTATGAAGGAGATTTGCAAACACTGCT
TGATTTATTCTTAAAAGATTTAGGACCGCATTGGGGTCCTTATTTCAAAC
ATGTTTTAAGTTATTGGAACAAGAAATCAGAGCTACCAAATTTGTTGATT
ACAAGGTATGAAGAGATGCAAGCAGATTTACCAAAAGTTATTAAAAGAAT
TGCCAGCTTCCTAGAAGTTACAATATCAGATGAAGATGTACTGAGATTGT
GTGACCatgtatcttttgaaaaaatgaaagctAATCCTATGGTTAACAAG
GACGAATATTTTGAGGTAAGTTGATTTCGTTAATGCTTATTTTAGGAATC
ATATCGNGCATGGGAGATTTGCAAACACTGCTTGATTTATTCTTAAAAGA
TTTAGGACCGCATTGGGGTCCTTATTTCAAACATGTTTTAAGTTATTGGA
ACAAGAAATCAGAGCTACCAAATTTGTTGATTACAAGGTATGAAGAGATG
CAAGCAGATTTACCAAAAGTTATTAAAAGAATTGCCAGCTTCCTAGAAGT
TACAATATCAGATGAAGATGTACTGAAATTGTGTGACCatgtatcttttg
aaaaaatgaaggctAATCCTATGGTTAACAAGGACGAATCTTTTGAGGTA
GGTTAATTTTGTTGATTCTTGTTTTAGGAGTCATAccgggcttttccaga
aaaaaactctaCAACCCCTGTTTAGGAGTTCCAGCCTTTTGTGACCTCTC
ATTAGAATTCCAACTGGAAATACTGTAACCCCCCTTAAATTTCCAGTCAA
ACCTCTCTGGGATTCCGGATTTTTACAGAATTTGAAGCACTACCTCAATG
GAATTCTGCTTattttttgacggatttttgtAGACCCCTATTTGGAATTC
TACCTCATTTCAAACCCTACCTCCTGTAACAGAACTGGACCTTCGCAGCA
GGGAGTGTGTagtttttttctagaaaagcccaCTTGGTCTAAACGCAAAT
TATGTTCTCAAAAAAGCCGATCTTTTTCCCGTTCGGATACAAACGACCCC
TGACCGCATAATCACGGTTGAAAAGGTTTAATTTCGAAACTAATCTCGCA
TANGGATACAAACGACCCCTGACCGCATAATCACGGTCGGAAAGGTTTAA
TTTCGGAGCTATTTTCGCATAGTGTTGTAGTCATTCCACAAATCTTCCAT
ATACTTTTAGGAAAGGAAAAAAGCGATGAACAATGGTTATGCTGGCAAAT
TTATTAACAAAGGTAAAAGTGGAACGTGGAAAGAATATCTAACCGATGAA
ATGGTTCAACGATTTGAACAGTGGGAAGAGAAATGGTTGAAAGATACTGA
TCTTAAATTTGTTTATGAAGTTTGAAGTGTATTCagtcaaattctttttt
attacaACGTTTGTGTAGGGAGACCAAAATCCTTTATTTTTGAATCCGTC
AATCTCGTACCCCAGAGCCATTcaccattttttttattttactgaaaaAC
GTGGATATAGTTTAGCACTGCGCTGTATCAATTTTAGGGCGGTGGGCGTT
TTTTGAAAGACTTGGGCAGGTTATTTTCGGTGCCCAAGAAGGGCTGTGGG
CGTGAAATAGTCGaaataaaagtgaaagtgaaaaaagtCAAGACCAtttt
tttcgagtgatttgacCCTCGCGATAAACTTTAATATATTATTATTAGCA
GGTTGATTTGCGCGAAATTGTTACGAAAGtgttaaaaaattgtcaaaaaa
ctttttttttaaatttaaacttCTTTTAGTGTTTTTGTAACCTCTAGGGG
TCcagaaaaaatattaacagcTTTCCAACTTCATGAACCTTTTAACTttc
agaaaaattcaattttttcacttaCAGCCAGTTTTTTCACAGTCTATGCG
AAGAGTCAGTGAATGCATTTTTGCACTTGAGTAGCAAAAATCTGCAATTT
CAACctcaatatttttcattgtGGCAACAAACTTTGCCACTGTGGCAAAA
ATTTTACCACATGCCCCTGAACCTTTTTTTGAGGGGACCTCTCatacaaa
atttgagctcaaaatttcaaagtgatattcattatttattattttgagca
gtggcaaaatttgatgacgtcaccgatggtggtgacgtcatcattgatga
caaaattttgatagcAGGTGCCAATACATATTATAAacacactgtgaaaa
ttttatgaaaaattattaaatctaatcaaaagttatcaaaaaatttcctt
caggGAAAATACTTGCGAAGGGTTAAGCAAATTTTGTGACACACTCTCTT
TATTAACACGAGACTCTTTCCCAAAGgtattttaaggaaaaagttttttc
cagTTCTCACTTTTATgaataatttcattttagtgaaaagtaaaattgca
taaaaagattagaaaaacTTTTGATCATGTCTACCAATGGAGAGGAAAGA
TGGCAAGCAATCAAATATCAGccacaaaatcagaaaaatttccatCAATG
GATACACCAAAAGTTacgaaaattgaaacaaactcACCAAAAAAGTTTCG
ACGTAATGAATAAGTACTTTCCAGTGGAGAAGactatgacagaaagtatg
gaAAAGATGACAGATGATGATATCAAAGTCGCAGCAAAAGAATGTGGTTT
CCATCCATCAATTACTGAACTTCTGGTAGCAATTCAAACGGATCCAATCA
TACACATGCTTTTTCATCACATGTATAAAGAACAAACAGTTCATCTACCA
CCCGGAAAACTGTGCATCCAGTCCTGGCAAGAGGCATTAATTGTGATCAA
CGAATGTATAAATGAAGCTCCTGAATTTGATAATGAAAATCCAATCACTG
CACCACTGTATTGTATTTTCAGTAGCCCAATAGCAACACCAGTTGGAAAT
ACCtgttttttgcatgaaaaagtGAATGCTTTGATGaaggaaattttgat
tgaatgGGGTAAGTACTTAACAAGCAAATCTTCTTGTTACGTATTAACTG
ATGCACCTAAAGGTTGGTTCAGCATTAAAGCCCTAGAAGCCATGCCGAAT
TTCAATGAAACATATGTCTGCGATCCATCAAAGCCTTTTTGGGGTTTCAC
TTCTTGGGACGATTTTTTTGTTCGCAAGTTTAAAGATGGAGCAAGATCAG
tggatgatgaagaagatgatTGCATAATTGTTAATCCATGCGAAGCAACC
CCTTACAAAGTTAAATGGAACGTCAAAAAGTATGATCAATTTTGGATAAA
GGAACAAAATTATTCTATGGAGTTCGTCTTGAACAAGAACCCATTGGCAG
CTGCTTTTAATGGGGGAACAATTTATCAGGGCTTATTATGCGCTACCAAT
TATCATAGATTTCATAGCCCTGTTAATGGCATTATCCACCATCTCGATTT
GGTTGAAGGAAGTTATTTTTCACAACCGTACATAGAAGGTGGATATCCAA
TCTTGAGAGACGTACTACCATACTTAGCGCATGTCGCAACAAGAGGAATC
TTTTATATCAAAGCCGACAATCCAAATATTGGTTTGATTGCGTTTATAGC
AGTTGGAATGACTGAAGTATCAACAGTTGAAATGACAGTAAAAGTTGGAG
ATCGCGTGAAAAAGGGTCACGAAATCGGAATGTTTCATTATGGAGGATCG
AACTTCCTGTTAGTTTTTAGAGGGGAAGTTAACATCAAATTCGATGACCA
ATTATTGCAAGGCTTAAATTCTGGTAACATCAAATTGAATAAACGAATTG
GCCATGTTCTTGCACCTGAAATAAAATAACAAGAAGGCGCCTTATGatga
aaaactttataaaatccTAGAAATATTCTTATCTTCATATTCATTTATCA
TTTATTGTTAATCTAATTTATTAAtttaatctttttaatttaattctttt
caggtgaagagccaaatgtaaattttggaaatgccagaaatatatcatta
ttattattattgttatctCAGGAGTAAATATTAGAGGAAATATGACGTCA
AAATTAGTGAAACAACTCAATCCGAAAGTGAACCTCGGTTGTTCGTAAAA
TGATATAATTTCAAAAGTATGGTCAATAATTTAACATATCTTACTTTATA
TTGATATAGAATTTGTAATTCATGAATATAAAagaattgtttttaaattt
tctcagcAATACTAGTAGTTTCATGTTATTCACGATCATCAGTTGATTTG
AAATGACTATAAAGGCCGGTCGGTCTccacaggttttttccaaacatACC
ACTATAGAAATTGATTAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067816-exon-scaffold_476-1491911889:300674..301038 | TCONS_00067816-exon-scaffold_476-1491911889:300674..301038 | Clytia hemisphaerica | exon |
| TCONS_00067816-exon-scaffold_476-1510915933:300674..301038 | TCONS_00067816-exon-scaffold_476-1510915933:300674..301038 | Clytia hemisphaerica | exon |
| TCONS_00067816-exon-scaffold_476-1575043694:300674..301038 | TCONS_00067816-exon-scaffold_476-1575043694:300674..301038 | Clytia hemisphaerica | exon |
| TCONS_00067816-exon-scaffold_476-1491911889:301934..304994 | TCONS_00067816-exon-scaffold_476-1491911889:301934..304994 | Clytia hemisphaerica | exon |
| TCONS_00067816-exon-scaffold_476-1510915933:301934..304994 | TCONS_00067816-exon-scaffold_476-1510915933:301934..304994 | Clytia hemisphaerica | exon |
| TCONS_00067816-exon-scaffold_476-1575043694:301934..304994 | TCONS_00067816-exon-scaffold_476-1575043694:301934..304994 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_476 | supercontig | scaffold_476:300674..304994 + |
Blast
BLAST of TCONS_00067816 vs. Swiss-Prot (Human)
Match: ST1B1 (Sulfotransferase family cytosolic 1B member 1 OS=Homo sapiens GN=SULT1B1 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 2.460e-17 Identity = 60/180 (33.33%), Postives = 92/180 (51.11%), Query Frame = 3
Query: 3 MIYVIRNPRDVIISY-----LNHLRILHGYEGXXXXXXXXXXXXXGPHWGPYFKHVLSYWNKKSELPNLLITRYEEMQADLPKVIKRIASFLEVTISDEDVLRLCDHVSFEKMKANPMVNKDEYFEERKKAMNNGYAGKFINKGKSGTWKEYLTDEMVQRFEQWEEKWLKDTDLKFVYEV 527
MIY+ RN +DV +SY +N+L+ G + +G +F HV ++W KK E P +L YE+M+ + + IK+I FLE ++DE + R+ H SFE MK NP+VN Y M++ F+ KG +G WK Y T ++F+ E + T L+F E+
Sbjct: 126 MIYLARNAKDVSVSYYHFDLMNNLQPFPGTWEEYLEKFLTGKVA----YGSWFTHVKNWWKKKEEHP-ILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVN---YTHLPTTVMDHS-KSPFMRKGTAGDWKNYFTVAQNEKFDAIYETEMSKTALQFRTEI 296
The following BLAST results are available for this feature:
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