|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067815 ID=TCONS_00067815|Name=TCONS_00067815|organism=Clytia hemisphaerica|type=transcript|length=3429bp TTTAGATGATCTACGTTATTCGAAATCCAAGAGATGTAATCATATCTTAT CTCAACCATTTGCGAATATTACATGGGTATGAAGGAGATTTGCAAACACT GCTTGATTTATTCTTAAAAGATTTAGGACCGCATTGGGGTCCTTATTTCA AACATGTTTTAAGTTATTGGAACAAGAAATCAGAGCTACCAAATTTGTTG ATTACAAGGTATGAAGAGATGCAAGCAGATTTACCAAAAGTTATTAAAAG AATTGCCAGCTTCCTAGAAGTTACAATATCAGATGAAGATGTACTGAGAT TGTGTGACCatgtatcttttgaaaaaatgaaagctAATCCTATGGTTAAC AAGGACGAATCTTTTGAGGAAAGGAAAAAAGCGATGAACAATGGTTATGC TGGCAAATTTATTAACAAAGGTAAAAGTGGAACGTGGAAAGAATATCTAA CCGATGAAATGGTTCAACGATTTGAACAGTGGGAAGAGAAATGGTTGAAA GATACTGATCTTAAATTTGTTTATGAAGTTTGAAGTGTATTCagtcaaat tcttttttattacaACGTTTGTGTAGGGAGACCAAAATCCTTTATTTTTG AATCCGTCAATCTCGTACCCCAGAGCCATTcaccattttttttattttac tgaaaaACGTGGATATAGTTTAGCACTGCGCTGTATCAATTTTAGGGCGG TGGGCGTTTTTTGAAAGACTTGGGCAGGTTATTTTCGGTGCCCAAGAAGG GCTGTGGGCGTGAAATAGTCGaaataaaagtgaaagtgaaaaaagtCAAG ACCAtttttttcgagtgatttgacCCTCGCGATAAACTTTAATATATTAT TATTAGCAGGTTGATTTGCGCGAAATTGTTACGAAAGtgttaaaaaattg tcaaaaaactttttttttaaatttaaacttCTTTTAGTGTTTTTGTAACC TCTAGGGGTCcagaaaaaatattaacagcTTTCCAACTTCATGAACCTTT TAACTttcagaaaaattcaattttttcacttaCAGCCAGTTTTTTCACAG TCTATGCGAAGAGTCAGTGAATGCATTTTTGCACTTGAGTAGCAAAAATC TGCAATTTCAACctcaatatttttcattgtGGCAACAAACTTTGCCACTG TGGCAAAAATTTTACCACATGCCCCTGAACCTTTTTTTGAGGGGACCTCT Catacaaaatttgagctcaaaatttcaaagtgatattcattatttattat tttgagcagtggcaaaatttgatgacgtcaccgatggtggtgacgtcatc attgatgacaaaattttgatagcAGGTGCCAATACATATTATAAacacac tgtgaaaattttatgaaaaattattaaatctaatcaaaagttatcaaaaa atttccttcaggGAAAATACTTGCGAAGGGTTAAGCAAATTTTGTGACAC ACTCTCTTTATTAACACGAGACTCTTTCCCAAAGgtattttaaggaaaaa gttttttccagTTCTCACTTTTATgaataatttcattttagtgaaaagta aaattgcataaaaagattagaaaaacTTTTGATCATGTCTACCAATGGAG AGGAAAGATGGCAAGCAATCAAATATCAGccacaaaatcagaaaaatttc catCAATGGATACACCAAAAGTTacgaaaattgaaacaaactcACCAAAA AAGTTTCGACGTAATGAATAAGTACTTTCCAGTGGAGAAGactatgacag aaagtatggaAAAGATGACAGATGATGATATCAAAGTCGCAGCAAAAGAA TGTGGTTTCCATCCATCAATTACTGAACTTCTGGTAGCAATTCAAACGGA TCCAATCATACACATGCTTTTTCATCACATGTATAAAGAACAAACAGTTC ATCTACCACCCGGAAAACTGTGCATCCAGTCCTGGCAAGAGGCATTAATT GTGATCAACGAATGTATAAATGAAGCTCCTGAATTTGATAATGAAAATCC AATCACTGCACCACTGTATTGTATTTTCAGTAGCCCAATAGCAACACCAG TTGGAAATACCtgttttttgcatgaaaaagtGAATGCTTTGATGaaggaa attttgattgaatgGGGTAAGTACTTAACAAGCAAATCTTCTTGTTACGT ATTAACTGATGCACCTAAAGGTTGGTTCAGCATTAAAGCCCTAGAAGCCA TGCCGAATTTCAATGAAACATATGTCTGCGATCCATCAAAGCCTTTTTGG GGTTTCACTTCTTGGGACGATTTTTTTGTTCGCAAGTTTAAAGATGGAGC AAGATCAGtggatgatgaagaagatgatTGCATAATTGTTAATCCATGCG AAGCAACCCCTTACAAAGTTAAATGGAACGTCAAAAAGTATGATCAATTT TGGATAAAGGAACAAAATTATTCTATGGAGTTCGTCTTGAACAAGAACCC ATTGGCAGCTGCTTTTAATGGGGGAACAATTTATCAGGGCTTATTATGCG CTACCAATTATCATAGATTTCATAGCCCTGTTAATGGCATTATCCACCAT CTCGATTTGGTTGAAGGAAGTTATTTTTCACAACCGTACATAGAAGGTGG ATATCCAATCTTGAGAGACGTACTACCATACTTAGCGCATGTCGCAACAA GAGGAATCTTTTATATCAAAGCCGACAATCCAAATATTGGTTTGATTGCG TTTATAGCAGTTGGAATGACTGAAGTATCAACAGTTGAAATGACAGTAAA AGTTGGAGATCGCGTGAAAAAGGGTCACGAAATCGGAATGTTTCATTATG GAGGATCGAACTTCCTGTTAGTTTTTAGAGGGGAAGTTAACATCAAATTC GATGACCAATTATTGCAAGGCTTAAATTCTGGTAACATCAAATTGAATAA ACGAATTGGCCATGTTCTTGCACCTGAAATAAAATAACAAGAAGGCGCCT TATGatgaaaaactttataaaatccTAGAAATATTCTTATCTTCATATTC ATTTATCATTTATTGTTAATCTAATTTATTAAtttaatctttttaattta attcttttcaggtgaagagccaaatgtaaattttggaaatgccagaaata tatcattattattattattgttatctCAGGAGTAAATATTAGAGGAAATA TGACGTCAAAATTAGTGAAACAACTCAATCCGAAAGTGAACCTCGGTTGT TCGTAAAATGATATAATTTCAAAAGTATGGTCAATAATTTAACATATCTT ACTTTATATTGATATAGAATTTGTAATTCATGAATATAAAagaattgttt ttaaattttctcagcAATACTAGTAGTTTCATGTTATTCACGATCATCAG TTGATTTGAAATGACTATAAAGGCCGGTCGGTCTccacaggttttttcca aacatACCACTATAGAAATTGATTAAAGG Run BLAST on NCBI protein sequence of TCONS_00067815-protein >TCONS_00067815-protein ID=TCONS_00067815-protein|Name=TCONS_00067815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
MSTNGEERWQAIKYQPQNQKNFHQWIHQKLRKLKQTHQKSFDVMNKYFPV EKTMTESMEKMTDDDIKVAAKECGFHPSITELLVAIQTDPIIHMLFHHMY KEQTVHLPPGKLCIQSWQEALIVINECINEAPEFDNENPITAPLYCIFSS PIATPVGNTCFLHEKVNALMKEILIEWGKYLTSKSSCYVLTDAPKGWFSI KALEAMPNFNETYVCDPSKPFWGFTSWDDFFVRKFKDGARSVDDEEDDCI IVNPCEATPYKVKWNVKKYDQFWIKEQNYSMEFVLNKNPLAAAFNGGTIY QGLLCATNYHRFHSPVNGIIHHLDLVEGSYFSQPYIEGGYPILRDVLPYL AHVATRGIFYIKADNPNIGLIAFIAVGMTEVSTVEMTVKVGDRVKKGHEI GMFHYGGSNFLLVFRGEVNIKFDDQLLQGLNSGNIKLNKRIGHVLAPEIK Run BLAST on NCBI transcript from alignment at scaffold_476:300671..304994+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067815 ID=TCONS_00067815|Name=TCONS_00067815|organism=Clytia hemisphaerica|type=transcript|length=4324bp|location=Sequence derived from alignment at scaffold_476:300671..304994+ (Clytia hemisphaerica) TTTAGATGATCTACGTTATTCGAAATCCAAGAGATGTAATCATATCTTAT
CTCAACCATTTGCGAATATTACATGGGTATGAAGGAGATTTGCAAACACT
GCTTGATTTATTCTTAAAAGATTTAGGACCGCATTGGGGTCCTTATTTCA
AACATGTTTTAAGTTATTGGAACAAGAAATCAGAGCTACCAAATTTGTTG
ATTACAAGGTATGAAGAGATGCAAGCAGATTTACCAAAAGTTATTAAAAG
AATTGCCAGCTTCCTAGAAGTTACAATATCAGATGAAGATGTACTGAGAT
TGTGTGACCatgtatcttttgaaaaaatgaaagctAATCCTATGGTTAAC
AAGGACGAATATTTTGAGGTAAGTTGATTTCGTTAATGCTTATTTTAGGA
ATCATATCGNGCATGGGAGATTTGCAAACACTGCTTGATTTATTCTTAAA
AGATTTAGGACCGCATTGGGGTCCTTATTTCAAACATGTTTTAAGTTATT
GGAACAAGAAATCAGAGCTACCAAATTTGTTGATTACAAGGTATGAAGAG
ATGCAAGCAGATTTACCAAAAGTTATTAAAAGAATTGCCAGCTTCCTAGA
AGTTACAATATCAGATGAAGATGTACTGAAATTGTGTGACCatgtatctt
ttgaaaaaatgaaggctAATCCTATGGTTAACAAGGACGAATCTTTTGAG
GTAGGTTAATTTTGTTGATTCTTGTTTTAGGAGTCATAccgggcttttcc
agaaaaaaactctaCAACCCCTGTTTAGGAGTTCCAGCCTTTTGTGACCT
CTCATTAGAATTCCAACTGGAAATACTGTAACCCCCCTTAAATTTCCAGT
CAAACCTCTCTGGGATTCCGGATTTTTACAGAATTTGAAGCACTACCTCA
ATGGAATTCTGCTTattttttgacggatttttgtAGACCCCTATTTGGAA
TTCTACCTCATTTCAAACCCTACCTCCTGTAACAGAACTGGACCTTCGCA
GCAGGGAGTGTGTagtttttttctagaaaagcccaCTTGGTCTAAACGCA
AATTATGTTCTCAAAAAAGCCGATCTTTTTCCCGTTCGGATACAAACGAC
CCCTGACCGCATAATCACGGTTGAAAAGGTTTAATTTCGAAACTAATCTC
GCATANGGATACAAACGACCCCTGACCGCATAATCACGGTCGGAAAGGTT
TAATTTCGGAGCTATTTTCGCATAGTGTTGTAGTCATTCCACAAATCTTC
CATATACTTTTAGGAAAGGAAAAAAGCGATGAACAATGGTTATGCTGGCA
AATTTATTAACAAAGGTAAAAGTGGAACGTGGAAAGAATATCTAACCGAT
GAAATGGTTCAACGATTTGAACAGTGGGAAGAGAAATGGTTGAAAGATAC
TGATCTTAAATTTGTTTATGAAGTTTGAAGTGTATTCagtcaaattcttt
tttattacaACGTTTGTGTAGGGAGACCAAAATCCTTTATTTTTGAATCC
GTCAATCTCGTACCCCAGAGCCATTcaccattttttttattttactgaaa
aACGTGGATATAGTTTAGCACTGCGCTGTATCAATTTTAGGGCGGTGGGC
GTTTTTTGAAAGACTTGGGCAGGTTATTTTCGGTGCCCAAGAAGGGCTGT
GGGCGTGAAATAGTCGaaataaaagtgaaagtgaaaaaagtCAAGACCAt
ttttttcgagtgatttgacCCTCGCGATAAACTTTAATATATTATTATTA
GCAGGTTGATTTGCGCGAAATTGTTACGAAAGtgttaaaaaattgtcaaa
aaactttttttttaaatttaaacttCTTTTAGTGTTTTTGTAACCTCTAG
GGGTCcagaaaaaatattaacagcTTTCCAACTTCATGAACCTTTTAACT
ttcagaaaaattcaattttttcacttaCAGCCAGTTTTTTCACAGTCTAT
GCGAAGAGTCAGTGAATGCATTTTTGCACTTGAGTAGCAAAAATCTGCAA
TTTCAACctcaatatttttcattgtGGCAACAAACTTTGCCACTGTGGCA
AAAATTTTACCACATGCCCCTGAACCTTTTTTTGAGGGGACCTCTCatac
aaaatttgagctcaaaatttcaaagtgatattcattatttattattttga
gcagtggcaaaatttgatgacgtcaccgatggtggtgacgtcatcattga
tgacaaaattttgatagcAGGTGCCAATACATATTATAAacacactgtga
aaattttatgaaaaattattaaatctaatcaaaagttatcaaaaaatttc
cttcaggGAAAATACTTGCGAAGGGTTAAGCAAATTTTGTGACACACTCT
CTTTATTAACACGAGACTCTTTCCCAAAGgtattttaaggaaaaagtttt
ttccagTTCTCACTTTTATgaataatttcattttagtgaaaagtaaaatt
gcataaaaagattagaaaaacTTTTGATCATGTCTACCAATGGAGAGGAA
AGATGGCAAGCAATCAAATATCAGccacaaaatcagaaaaatttccatCA
ATGGATACACCAAAAGTTacgaaaattgaaacaaactcACCAAAAAAGTT
TCGACGTAATGAATAAGTACTTTCCAGTGGAGAAGactatgacagaaagt
atggaAAAGATGACAGATGATGATATCAAAGTCGCAGCAAAAGAATGTGG
TTTCCATCCATCAATTACTGAACTTCTGGTAGCAATTCAAACGGATCCAA
TCATACACATGCTTTTTCATCACATGTATAAAGAACAAACAGTTCATCTA
CCACCCGGAAAACTGTGCATCCAGTCCTGGCAAGAGGCATTAATTGTGAT
CAACGAATGTATAAATGAAGCTCCTGAATTTGATAATGAAAATCCAATCA
CTGCACCACTGTATTGTATTTTCAGTAGCCCAATAGCAACACCAGTTGGA
AATACCtgttttttgcatgaaaaagtGAATGCTTTGATGaaggaaatttt
gattgaatgGGGTAAGTACTTAACAAGCAAATCTTCTTGTTACGTATTAA
CTGATGCACCTAAAGGTTGGTTCAGCATTAAAGCCCTAGAAGCCATGCCG
AATTTCAATGAAACATATGTCTGCGATCCATCAAAGCCTTTTTGGGGTTT
CACTTCTTGGGACGATTTTTTTGTTCGCAAGTTTAAAGATGGAGCAAGAT
CAGtggatgatgaagaagatgatTGCATAATTGTTAATCCATGCGAAGCA
ACCCCTTACAAAGTTAAATGGAACGTCAAAAAGTATGATCAATTTTGGAT
AAAGGAACAAAATTATTCTATGGAGTTCGTCTTGAACAAGAACCCATTGG
CAGCTGCTTTTAATGGGGGAACAATTTATCAGGGCTTATTATGCGCTACC
AATTATCATAGATTTCATAGCCCTGTTAATGGCATTATCCACCATCTCGA
TTTGGTTGAAGGAAGTTATTTTTCACAACCGTACATAGAAGGTGGATATC
CAATCTTGAGAGACGTACTACCATACTTAGCGCATGTCGCAACAAGAGGA
ATCTTTTATATCAAAGCCGACAATCCAAATATTGGTTTGATTGCGTTTAT
AGCAGTTGGAATGACTGAAGTATCAACAGTTGAAATGACAGTAAAAGTTG
GAGATCGCGTGAAAAAGGGTCACGAAATCGGAATGTTTCATTATGGAGGA
TCGAACTTCCTGTTAGTTTTTAGAGGGGAAGTTAACATCAAATTCGATGA
CCAATTATTGCAAGGCTTAAATTCTGGTAACATCAAATTGAATAAACGAA
TTGGCCATGTTCTTGCACCTGAAATAAAATAACAAGAAGGCGCCTTATGa
tgaaaaactttataaaatccTAGAAATATTCTTATCTTCATATTCATTTA
TCATTTATTGTTAATCTAATTTATTAAtttaatctttttaatttaattct
tttcaggtgaagagccaaatgtaaattttggaaatgccagaaatatatca
ttattattattattgttatctCAGGAGTAAATATTAGAGGAAATATGACG
TCAAAATTAGTGAAACAACTCAATCCGAAAGTGAACCTCGGTTGTTCGTA
AAATGATATAATTTCAAAAGTATGGTCAATAATTTAACATATCTTACTTT
ATATTGATATAGAATTTGTAATTCATGAATATAAAagaattgtttttaaa
ttttctcagcAATACTAGTAGTTTCATGTTATTCACGATCATCAGTTGAT
TTGAAATGACTATAAAGGCCGGTCGGTCTccacaggttttttccaaacat
ACCACTATAGAAATTGATTAAAGG Coding sequence (CDS) from alignment at scaffold_476:300671..304994+ >TCONS_00067815 ID=TCONS_00067815|Name=TCONS_00067815|organism=Clytia hemisphaerica|type=CDS|length=1353bp|location=Sequence derived from alignment at scaffold_476:300671..304994+ (Clytia hemisphaerica) ATGTCTACCAATGGAGAGGAAAGATGGCAAGCAATCAAATATCAGccaca aaatcagaaaaatttccatCAATGGATACACCAAAAGTTacgaaaattga aacaaactcACCAAAAAAGTTTCGACGTAATGAATAAGTACTTTCCAGTG GAGAAGactatgacagaaagtatggaAAAGATGACAGATGATGATATCAA AGTCGCAGCAAAAGAATGTGGTTTCCATCCATCAATTACTGAACTTCTGG TAGCAATTCAAACGGATCCAATCATACACATGCTTTTTCATCACATGTAT AAAGAACAAACAGTTCATCTACCACCCGGAAAACTGTGCATCCAGTCCTG GCAAGAGGCATTAATTGTGATCAACGAATGTATAAATGAAGCTCCTGAAT TTGATAATGAAAATCCAATCACTGCACCACTGTATTGTATTTTCAGTAGC CCAATAGCAACACCAGTTGGAAATACCtgttttttgcatgaaaaagtGAA TGCTTTGATGaaggaaattttgattgaatgGGGTAAGTACTTAACAAGCA AATCTTCTTGTTACGTATTAACTGATGCACCTAAAGGTTGGTTCAGCATT AAAGCCCTAGAAGCCATGCCGAATTTCAATGAAACATATGTCTGCGATCC ATCAAAGCCTTTTTGGGGTTTCACTTCTTGGGACGATTTTTTTGTTCGCA AGTTTAAAGATGGAGCAAGATCAGtggatgatgaagaagatgatTGCATA ATTGTTAATCCATGCGAAGCAACCCCTTACAAAGTTAAATGGAACGTCAA AAAGTATGATCAATTTTGGATAAAGGAACAAAATTATTCTATGGAGTTCG TCTTGAACAAGAACCCATTGGCAGCTGCTTTTAATGGGGGAACAATTTAT CAGGGCTTATTATGCGCTACCAATTATCATAGATTTCATAGCCCTGTTAA TGGCATTATCCACCATCTCGATTTGGTTGAAGGAAGTTATTTTTCACAAC CGTACATAGAAGGTGGATATCCAATCTTGAGAGACGTACTACCATACTTA GCGCATGTCGCAACAAGAGGAATCTTTTATATCAAAGCCGACAATCCAAA TATTGGTTTGATTGCGTTTATAGCAGTTGGAATGACTGAAGTATCAACAG TTGAAATGACAGTAAAAGTTGGAGATCGCGTGAAAAAGGGTCACGAAATC GGAATGTTTCATTATGGAGGATCGAACTTCCTGTTAGTTTTTAGAGGGGA AGTTAACATCAAATTCGATGACCAATTATTGCAAGGCTTAAATTCTGGTA ACATCAAATTGAATAAACGAATTGGCCATGTTCTTGCACCTGAAATAAAA TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067815-exon-scaffold_476-1491911889:300671..301002 | TCONS_00067815-exon-scaffold_476-1491911889:300671..301002 | Clytia hemisphaerica | exon |
TCONS_00067815-exon-scaffold_476-1510915933:300671..301002 | TCONS_00067815-exon-scaffold_476-1510915933:300671..301002 | Clytia hemisphaerica | exon |
TCONS_00067815-exon-scaffold_476-1575043694:300671..301002 | TCONS_00067815-exon-scaffold_476-1575043694:300671..301002 | Clytia hemisphaerica | exon |
TCONS_00067815-exon-scaffold_476-1491911889:301335..301370 | TCONS_00067815-exon-scaffold_476-1491911889:301335..301370 | Clytia hemisphaerica | exon |
TCONS_00067815-exon-scaffold_476-1510915933:301335..301370 | TCONS_00067815-exon-scaffold_476-1510915933:301335..301370 | Clytia hemisphaerica | exon |
TCONS_00067815-exon-scaffold_476-1575043694:301335..301370 | TCONS_00067815-exon-scaffold_476-1575043694:301335..301370 | Clytia hemisphaerica | exon |
TCONS_00067815-exon-scaffold_476-1491911889:301934..304994 | TCONS_00067815-exon-scaffold_476-1491911889:301934..304994 | Clytia hemisphaerica | exon |
TCONS_00067815-exon-scaffold_476-1510915933:301934..304994 | TCONS_00067815-exon-scaffold_476-1510915933:301934..304994 | Clytia hemisphaerica | exon |
TCONS_00067815-exon-scaffold_476-1575043694:301934..304994 | TCONS_00067815-exon-scaffold_476-1575043694:301934..304994 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_476 | supercontig | scaffold_476:300671..304994 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0008654 | phospholipid biosynthetic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0004609 | phosphatidylserine decarboxylase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0008654 |
phospholipid biosynthetic process |
molecular_function |
GO:0004609 |
phosphatidylserine decarboxylase activity |
Blast
BLAST of TCONS_00067815 vs. Swiss-Prot (Human)
Match: ST1B1 (Sulfotransferase family cytosolic 1B member 1 OS=Homo sapiens GN=SULT1B1 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 2.256e-17 Identity = 58/180 (32.22%), Postives = 91/180 (50.56%), Query Frame = 3
Query: 6 MIYVIRNPRDVIISY-----LNHLRILHGYEGXXXXXXXXXXXXXGPHWGPYFKHVLSYWNKKSELPNLLITRYEEMQADLPKVIKRIASFLEVTISDEDVLRLCDHVSFEKMKANPMVNKDESFEERKKAMNNGYAGKFINKGKSGTWKEYLTDEMVQRFEQWEEKWLKDTDLKFVYEV 530
MIY+ RN +DV +SY +N+L+ G + +G +F HV ++W KK E P +L YE+M+ + + IK+I FLE ++DE + R+ H SFE MK NP+VN + + + F+ KG +G WK Y T ++F+ E + T L+F E+
Sbjct: 126 MIYLARNAKDVSVSYYHFDLMNNLQPFPGTWEEYLEKFLTGKVA----YGSWFTHVKNWWKKKEEHP-ILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVN----YTHLPTTVMDHSKSPFMRKGTAGDWKNYFTVAQNEKFDAIYETEMSKTALQFRTEI 296
The following BLAST results are available for this feature:
|