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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067814 ID=TCONS_00067814|Name=TCONS_00067814|organism=Clytia hemisphaerica|type=transcript|length=2805bp
aaaaaggGATGGAACAACTGGCCGTCACGGCCGTCACGATTCATCGAATC
TTTTGCACAGGTCGTTACTTGCGTGAGTGAATAACGGTTTAAAACCTAAA
AATGACCAAATGTATGCAAATTTGGCATTGCTCCAAGATTTTAAGTACCG
AATCTCTTAAAACAATTATCATTGATTACCtcatcggccctttttacacc
agCCCTTCATGGCGTTATTCTTTGGCTGGTGGTGTATAATAAGGGTCGGC
GTAATAAGGTGCAAAATTTTCCATATTTCACTGAAaagcagcaatatttt
tggaccattttttctcaatttaaggGGTTTCAAGTGTaattataaattaa
aaacaacCATGTTTTAATCCGTACCCAAATATTCGCGAAATATTGATATT
TAATGTAATACTAAAGTCCATTTGCTTTAAGTGTGCTCTCTTTTTTGCTA
CCATAAGGAAACCAGTGTAGTTAGAGTAgttcccttgagagtggtttcca
catggtAGGAAAAAGAGTGCACAATTAAAGCGAATAGACTTTAGCCCACC
ACGCGATCTTTTATCACTTTGTGTTAGGAAAAATCCTTGTTCGTCTGGTA
CAGCCTAAATTTAATCTCTTTCCTTTTTGTTCTATGAGCAGTTTGAAGGT
AATACAACTATAAAACATTGCATGGAAAATGATACCAATGATATTAGAAT
GGATAACATATCTCCTGTTGGCTGTTGTTGTATACAATTTGATAGTTTAC
CTAAACCATGTATATGATTTAAAAGACTATCCCCCAGGCCCTTTTCCTCT
CCCTTTAATCGGGAACTTGCATTGTATTGATTTTAAAAGGCCTcataaaa
catatcaaaaactgacaaaagcTTATGGAGATGTATTCTCGATCAGCTTT
GGTATGGAGAGAATCGTCATGGTGAATACAATAGAACAAGCCAAAGAGGC
GCTCGTGACAAAATCTGCTGAATTCGCAGGTAGGCCATCAAACCACCATG
CATTTGCTATGATAACAAGAAATTATCAAGATTTAGTCTTTGCTGATTAT
GGTTCACACTGGTTAATTGAAAGTTGCACAAGAAGTTGAACAAATGAATG
GACGATTAATGGAGAAAATTAATGAACCTGTCAATCTTAACGTGGAAATA
AGGTTGTTCATGACAAATATTATCTCCACAATAGTACTTGGTGAAAGATA
CGAAAATATAGAAAACCCCACATTTCAAAAGATATTAGAATTAAATAACT
ATTTACATTATGCTGTATATCATGGTGatccaatttcaatttcaaaatgg
cagaaATATCTTCCTATTCACTCGACTAGAATGTTATCAAGCTACTTAGC
AAAGAGAGATGAACATTTCAGAAATGTTTTTAACAAACATAAGACGAACT
TGAAACCggaaatgttgaaaaatatgttGGACTTGTTTATCCATACATCT
AGTGATGAAgagtttcttaaaaaacatgGAATAAGCGAGTTAACACGTGA
CACGATTGAAATGGTGATGATGGACCTCCTTGATGCAAGTGTTGACAATA
CAGCTGTAACTCTTTCTTGGATAATTTTGTACTTATTACATCATCCAAAA
TACATGAGAGAGGCTTACAATGAGATTAAACACATGGTTAGTGCAAAAAA
ATACCCAAAGATGAGCGATCANTCCACATGGTAGGAAAAAGAGTGCACAA
TTAAAGCGAATAGACTTTAGCCCACCACGCGATCTTTTATCACTTTGTGT
TAGGAAAAATCCTTGTTCGTCTGGTACAGCCTAAATTTAATCTCTTTCCT
TTTTGTTCTATGAGCAGTTTGAAGGTAATACAACTATAAAACATTGCATC
GAAAATGATACCAATGATATTAGAATGGATAACATATCTCCTGTTGGCTG
TTNTGAAtggaaaatcaatcaaaaagggTACTCAAGTGTTGTTTCATATT
TGGAATATTCATCGAGACGAGCGGTACTGGAATGATCCAGAAATCTTTAA
GCCAGAGCGTTGGATAgatgaaaatggaaattttgcaCCAAATNCGAGAC
GAGCGGTACTGGAATGATCCAGAAATCTTTAAGCCAGAGCGTTGGATAga
tgaaaatggaaatttttcaccaaaaatttGTAAAAGTTACTTACCGTTTT
TGATGGGCAAGCGCGTGTGCTTTGGTGAGCAAATTGCAAGAACAGAGTTA
TTTATAGCTCTAACAAGATTATTGGTTGATTTTCATATCGAACCAGAATC
TGGATTGCTGCCAAGTCTAACTGATGTCACCATAGGTGTTAACCAATATA
TGACACCCTTGTACAAAGTAATTCTTAGAAAACGAGATGTATAAGAAGAA
GCCGATGGCTATCATCATATCATGTAATATCAATTAATGCTTTTCATGAT
GCCAGAGCATGGGAACGTCTTCAGTCTTCTACGGTATCGATACCGATAGT
GAACAGATAGAAATTGGATTGAAAACTCTAttattctttgttaaaaatta
taaaaatatatacaaaatatgATAAATATATAAATAGTTTAATATAATAG
GAAATATAATATCACGGGTATTACTCTTAAAGTGCATCAATCTGACTTTA
TTTCATAGAAGTCATTTCCTTGTGGTCGATGGTGGTGGTTATTTATAcaa
gaaacttttttgattatATATCTGTTGACGTATTTCtttactaaaatttt
attacataAATTTAACTATGAACTCCCTTTTACTCCCGCTTTTACTTTCT
AAACAGCTAGCAGTATTCAGGAGGGAACTATTGCTAGGTTGACACCACTT
GATAC Run BLAST on NCBI transcript from alignment at scaffold_476:292380..296214+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067814 ID=TCONS_00067814|Name=TCONS_00067814|organism=Clytia hemisphaerica|type=transcript|length=3835bp|location=Sequence derived from alignment at scaffold_476:292380..296214+ (Clytia hemisphaerica)
aaaaaggGATGGAACAACTGGCCGTCACGGCCGTCACGATTCATCGAATC
TTTTGCACAGGTCGTTACTTGCGTGAGTGAATAACGGTTTAAAACCTAAA
AATGACCAAATGTATGCAAATTTGGCATTGCTCCAAGATTTTAAGTACCG
AATCTCTTAAAACAATTATCATTGATTACCtcatcggccctttttacacc
agCCCTTCATGGCGTTATTCTTTGGCTGGTGGTGTATAATAAGGGTCGGC
GTAATAAGGTGCAAAATTTTCCATATTTCACTGAAaagcagcaatatttt
tggaccattttttctcaatttaaggGGTTTCAAGTGTaattataaattaa
aaacaacCATGTTTTAATCCGTACCCAAATATTCGCGAAATATTGATATT
TAATGTAATACTAAAGTCCATTTGCTTTAAGTGTGCTCTCTTTTTTGCTA
CCATAAGGAAACCAGTGTAGTTAGAGTAgttcccttgagagtggtttcca
catggtAGGAAAAAGAGTGCACAATTAAAGCGAATAGACTTTAGCCCACC
ACGCGATCTTTTATCACTTTGTGTTAGGAAAAATCCTTGTTCGTCTGGTA
CAGCCTAAATTTAATCTCTTTCCTTTTTGTTCTATGAGCAGTTTGAAGGT
AATACAACTATAAAACATTGCATGGAAAATGATACCAATGATATTAGAAT
GGATAACATATCTCCTGTTGGCTGTTGTTGTATACAATTTGATAGTTTAC
CTAAACCATGTATATGATTTAAAAGACTATCCCCCAGGCCCTTTTCCTCT
CCCTTTAATCGGGAACTTGCATTGTATTGATTTTAAAAGGCCTcataaaa
catatcaaaaactgacaaaagcTTATGGAGATGTATTCTCGATCAGCTTT
GGTATGGAGAGAATCGTCATGGTGAATACAATAGAACAAGCCAAAGAGGC
GCTCGTGACAAAATCTGCTGAATTCGCAGGTAGGCCATCAAACCACCATG
CATTTGCTATGATAACAAGAAATTATCAAGATTTAGTCTTTGCTGATTAT
GGTTCACACTGGTTAATGCTTCGAAAATTAGCAATCAGATCCTTAAAAAT
GTATGCTAATCTAGATGGAAAACTTGAAGTGAAAGTTGCACAAGAAGTTG
AACAAATGAATGGACGATTAATGGAGAAAATTAATGAACCTGTCAATCTT
AACGTGGAAATAAGTAAGTTTTTTCAGACAGTTTCTTTAGAAATTATCTA
CCGAACGTCTCTAATTTCCTCTGTCAAAAGTAAAGATATCTGCAATCAAa
gccataatatttgagaaaaaaagggaatctactgggaagtttttgaacca
caatcgatttgtaagtgctcctCATTTTTCTGACACTATCTACTttaagc
gtacaaactttcgcgaaatttacgacatttactttcgcgaatttaaggaa
caaatatttttcgcgagcataaacctTCGTGAATTGGGTGATCCAAATGA
GAGgtcgaaaattcgcgaaatttacgacatttactttcgcgaatttaagg
aaaaaatatttttcgcgagcataaacttttgtgAATTGGgtgatcaaaat
gaaaattttcacaccAAAAATAGCTTAAAAGTGACAAATGCTTCTTGAAT
TCGATTAAAAACTGGTAATATATGACTTGAATGAGGCTTTCAAGGAATAA
AAATGCTATAATTACTATTTTGTTATTCTGATTTCAAAACTTTacagatt
ttcaactttttcaagaattttttgtgagcataaactttcgcgaatcgcct
tgttaagaattttcaaagacattttctttcgcgaaaaaggtcaaaattcg
caaaaatcttgAAAGTTTCTGCtagcgaaagtttgtacgtctaATACTTG
AACGCCCCTGTCTCATTTTTCTGACAATATCTACTACTTGAACACCCCTG
TGAGGTGACTctgaataaaatcaaaatttgagataAAAAAACTCACTGGG
GTTGAAATTTTTACCTTCACCGGGATAGGGAGAAATATTTTCCCTGAGTT
CAAACTATAAAACTGATAACCTtagtatattaaaaaaagtcgaaaatgaa
gatgaaaaatgaataagAAAAAATCAACTCCTGGTAGAAAAGCTTACAAT
ATTGAATGGATTAATTTTTTCCCACTTTTAGGGTTGTTCATGACAAATAT
TATCTCCACAATAGTACTTGGTGAAAGATACGAAAATATAGAAAACCCCA
CATTTCAAAAGATATTAGAATTAAATAACTATTTACATTATGCTGTATAT
CATGGTGatccaatttcaatttcaaaatggcagaaATATCTTCCTATTCA
CTCGACTAGAATGTTATCAAGCTACTTAGCAAAGAGAGATGAACATTTCA
GAAATGTTTTTAACAAACATAAGACGAACTTGAAACCggaaatgttgaaa
aatatgttGGACTTGTTTATCCATACATCTAGTGATGAAgagtttcttaa
aaaacatgGAATAAGCGAGTTAACACGTGACACGATTGAAATGGTGATGA
TGGACCTCCTTGATGCAAGTGTTGACAATACAGCTGTAACTCTTTCTTGG
ATAATTTTGTACTTATTACATCATCCAAAATACATGAGAGAGGCTTACAA
TGAGATTAAACACATGGTTAGTGCAAAAAAATACCCAAAGATGAGCGATC
ANTCCACATGGTAGGAAAAAGAGTGCACAATTAAAGCGAATAGACTTTAG
CCCACCACGCGATCTTTTATCACTTTGTGTTAGGAAAAATCCTTGTTCGT
CTGGTACAGCCTAAATTTAATCTCTTTCCTTTTTGTTCTATGAGCAGTTT
GAAGGTAATACAACTATAAAACATTGCATCGAAAATGATACCAATGATAT
TAGAATGGATAACATATCTCCTGTTGGCTGTTNTGAAtggaaaatcaatc
aaaaagggTACTCAAGTGTTGTTTCATATTTGGAATATTCATCGAGACGA
GCGGTACTGGAATGATCCAGAAATCTTTAAGCCAGAGCGTTGGATAgatg
aaaatggaaattttgcaCCAAATNCGAGACGAGCGGTACTGGAATGATCC
AGAAATCTTTAAGCCAGAGCGTTGGATAgatgaaaatggaaatttttcac
caaaaatttGTAAAAGTTACTTACCGTTTTTGATGGGCAAGCGCGTGTGC
TTTGGTGAGCAAATTGCAAGAACAGAGTTATTTATAGCTCTAACAAGATT
ATTGGTTGATTTTCATATCGAACCAGAATCTGGATTGCTGCCAAGTCTAA
CTGATGTCACCATAGGTGTTAACCAATATATGACACCCTTGTACAAAGTA
ATTCTTAGAAAACGAGATGTATAAGAAGAAGCCGATGGCTATCATCATAT
CATGTAATATCAATTAATGCTTTTCATGATGCCAGAGCATGGGAACGTCT
TCAGTCTTCTACGGTATCGATACCGATAGTGAACAGATAGAAATTGGATT
GAAAACTCTAttattctttgttaaaaattataaaaatatatacaaaatat
gATAAATATATAAATAGTTTAATATAATAGGAAATATAATATCACGGGTA
TTACTCTTAAAGTGCATCAATCTGACTTTATTTCATAGAAGTCATTTCCT
TGTGGTCGATGGTGGTGGTTATTTATAcaagaaacttttttgattatATA
TCTGTTGACGTATTTCtttactaaaattttattacataAATTTAACTATG
AACTCCCTTTTACTCCCGCTTTTACTTTCTAAACAGCTAGCAGTATTCAG
GAGGGAACTATTGCTAGGTTGACACCACTTGATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067814-exon-scaffold_476-1491911889:292380..293446 | TCONS_00067814-exon-scaffold_476-1491911889:292380..293446 | Clytia hemisphaerica | exon |
| TCONS_00067814-exon-scaffold_476-1510915933:292380..293446 | TCONS_00067814-exon-scaffold_476-1510915933:292380..293446 | Clytia hemisphaerica | exon |
| TCONS_00067814-exon-scaffold_476-1575043694:292380..293446 | TCONS_00067814-exon-scaffold_476-1575043694:292380..293446 | Clytia hemisphaerica | exon |
| TCONS_00067814-exon-scaffold_476-1491911889:293509..293592 | TCONS_00067814-exon-scaffold_476-1491911889:293509..293592 | Clytia hemisphaerica | exon |
| TCONS_00067814-exon-scaffold_476-1510915933:293509..293592 | TCONS_00067814-exon-scaffold_476-1510915933:293509..293592 | Clytia hemisphaerica | exon |
| TCONS_00067814-exon-scaffold_476-1575043694:293509..293592 | TCONS_00067814-exon-scaffold_476-1575043694:293509..293592 | Clytia hemisphaerica | exon |
| TCONS_00067814-exon-scaffold_476-1491911889:294561..296214 | TCONS_00067814-exon-scaffold_476-1491911889:294561..296214 | Clytia hemisphaerica | exon |
| TCONS_00067814-exon-scaffold_476-1510915933:294561..296214 | TCONS_00067814-exon-scaffold_476-1510915933:294561..296214 | Clytia hemisphaerica | exon |
| TCONS_00067814-exon-scaffold_476-1575043694:294561..296214 | TCONS_00067814-exon-scaffold_476-1575043694:294561..296214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:292380..296214 + |
Blast
BLAST of TCONS_00067814 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.212e-24 Identity = 50/214 (23.36%), Postives = 94/214 (43.93%), Query Frame = 2
Query: 1073 VAQEVEQMNGRLMEKINEPVNLNVEIRLFMTNIISTIVLGERYENIENPTFQKILELNNYLHYAVYHGDPISISKWQKYLPIHSTRMLSSYLAKRDEHFRNVFNKHKTNLKPEMLKNMLDLFIHT--SSDEEFLKKHGISELTRDT-IEMVMMDLLDASVDNTAVTLSWIILYLLHHPKYMREAYNEIKHMVSAKKYPKMSDXSTW*EKECTIK 1705
+ QE+ + L + ++++ + + +TN+IS I Y+N +P I N + + + + W K P + L S++ R++ + +K + + + NMLD + +SD SEL D I + D+ A V+ T + W + +LLH+P+ ++ Y EI V + P +SD + E TI+
Sbjct: 146 ICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKN-GDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIR 358 HSP 2 Score: 61.6178 bits (148), Expect = 3.212e-24 Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 778 YPPGPFPLPLIGNLHCI-DFKRPHKTYQKLTKAYGDVFSISFGMERIVMVNTIEQAKEALVTKSAEFAGRPSNHHAFAMITRNYQDLVFADYGSHW 1062
YP LPL+G+L + H + KL K YG ++S+ G + V+V + AKE L+ K +F+GRP + + N + + FAD G+HW
Sbjct: 27 YPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQ-MATLDIASNNRKGIAFADSGAHW 121
The following BLAST results are available for this feature:
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