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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067809 ID=TCONS_00067809|Name=TCONS_00067809|organism=Clytia hemisphaerica|type=transcript|length=1692bp
GGTTTACAGTGGACTTTGGTTCTTGAGAAGCATTTGGACGCAGTAATTGC
ATCACTATGACTTGAGAATCCAAATGTGAACACAACGTTGAAACGTGTTG
CCATCGACATACCTTGTCTGATGTTACCATGAAATGTGTGTCGTGGAATA
TCATTGCCTTTCATCATCCCGATGGTCCGACGCATTCGAGACTCTGACAT
CCACTAATCTCATCCAAAGATAATCGAGAGATAGTGTCTTCAAATATAGT
TTACCTATCATAAAGATGACGGAGACAACAACCTAAATGAAGAAAAGATT
CAAAACATGTCAAGTTTAACCCAATCTTTAATTTGATGTTGTGGATGATA
ACTGGATTTGTCTTCAAAGATGCAGGAAGAAGATATTCAAGAAGGTCAGC
TTTTGGACATTGTGTCTTTATTGCTGACCAAGTCTTCAAAAATACTTCCA
ACCAACAACGTCATGTCTTTGGAGGTGACACAACACGTGGATCAACGAGT
TCCTTCAAAGCATTGGCAAACAAGAACAAATTTGGGTTTATTTCTGATGA
ATCTTCCGTTTCCTTCAGGAACCGCTCATTGATTACAGCTGCATGCGGGG
AAAGCATCGTTCCATCATTGCCACTACACGAAAGGCGATACAGTCAACCT
TCAGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTCTTTCAGTAAA
CGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTGCAAACAGCAG
CACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGCAGCACCCATT
GAGCCGCCCGCAGCACTTATCGCGCAATCCACAACACCAGTTGAAAATTC
ATTAACAGCTAATGAGATAACCACAGCATTCTCTTCAACTATAAGTGACC
ACACTACCACAATCACCACCGGACACGCTTTACCCGACTTCGAATCCACC
GACCTCATTGATGCTCTTGAACAGGAATCAGCTGAAGCGATGGGCGGCAC
CCACGGTGGCGGTCAACCTCTAGTGGCGGGTGCAATCACAAATGGGTTCT
CCTCTAATGAGGAGTACTATCAATTTCTTCAGCTCATGCTGACTGCTGTC
AATCAGCTGCAACAAGAACTCTTGATGGAAGAGCGTGCTGAACAGGCTGC
AAGAGACGCACGGGCCACACGGGCTCTTCGTGATCTTGCTGCGAACGAAA
ACCGCGCTCAACCCATTCGACACGCTCGACGAAGAAGACGTCGCGAAGAA
ATGGAGGGCCTCGAGAATGATCCTAACGCCGCTAAACGGCGCCGAAGACT
TTAAGTCTTTAAACAAAATGCTTCGAAGATACCCTCACGCACTCACTCCA
CCTTTCAAACCAACAATCTATTTTCTTAACAAACCCAACGTACATCCATC
GTCCACTTCCCAATGCAATAATCCTCTTCTTGAGGCTAAATAATAAGTAA
CcggagaagaaagaagaaaatccaATTCCATACCGAACGAACGAAATTCC
AGGAAAACACAACAGTTGACTTCAATAAACTAACTTAAATCACGTGACTT
CATCTCACCGATATGGTCAGAGCAAAACCTTCCCATCGAAGCtaaaaata
tatcatttataATATATCAATCATTTCTATTAATTTGTTCAGTTTTTGCA
TGATAAGTTTGAACAGTGAAATCCCTATTATCCTTCATCAGA Run BLAST on NCBI transcript from alignment at scaffold_476:192443..196110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067809 ID=TCONS_00067809|Name=TCONS_00067809|organism=Clytia hemisphaerica|type=transcript|length=3668bp|location=Sequence derived from alignment at scaffold_476:192443..196110+ (Clytia hemisphaerica)
GGTTTACAGTGGACTTTGGTTCTTGAGAAGCATTTGGACGCAGTAATTGC
ATCACTATGACTTGAGAATCCAAATGTGAACACAACGTTGAAACGTGTTG
CCATCGACATACCTTGTCTGATGTTACCATGAAATGTGTGTCGTGGAATA
TCATTGCCTTTCATCATCCCGATGGTCCGACGCATTCGAGACTCTGACAT
CCACTAATCTCATCCAAAGATAATCGAGAGATAGTGTCTTCAAATATAGT
TTACCTATCATAAAGATGACGGAGACAACAACCTAAATGAAGAAAAGATT
CAAAACATGTCAAGTTTAACCCAATCTTTAATTTGATGTTGTGGATGATA
ACTGGATTTGTCTTCAAAGGTAAGAATCCAAAATTCGGGTGTTTTACTAT
CAGTTTTCTCTTTATATAGAATGTGTAGCCTGGATGTGAATCTATTGTCC
AACTGACTAGGATTTTCTTTAAGTTTATTCACTTCGAGGCCAAGCAAAAC
CAAACATAATTTCTGAGTCCTGATTTTGCTCAGGGTCAGGGGGTTTCAAA
TTATGAATACTAGACAACAtcataaaatgacgtcacagtaTCTCtctaaa
tattaaaatatttgacgtcaattatttgtCGTTCAAAATAATCTCTCATT
TTGAAATCGACTAGTGGTCTAGTCGATTGTCCTGTCAGTAGAATAGTATT
TAATAGTAATAATTTtgcaatttctttgaaaatggaATGGTCTGATCAAG
TTCAACGTTTTCAGTGCCATtcattgaataaaaattcattttcttccTCT
GTTTGGATTCTATACGAAGATGCAGGAAGAAGATATTCAAGAAGGTCAGC
TTTTGGACATTGTGTTTTTATTGCTGACCAAGTCTTCAAAAACACTTCCA
ACCAACAACGTCATGTCTTTGGAGGTGACACAACACGTGGATCAACGAGT
TCCTTCAAAGCATTGGCAAACAAGAACAaatttgggtttgtttctgatgA
ATCTTCCGTTTCCTTCAGGAACCGCTCATTGATTACAGCTGCATGCGGGG
AAAGCATCGTTCCATCATTGCCATTACACGAAAGGCGATACAGTCAACCT
TCTGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTCTTTCAGTAAA
CGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTGCAAACAGCAG
CACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGCAGCACCCATT
GAGCCGCCCGCAGCACTTATCGCNTACAGTGGACTTTGGTTCTTGAGAAG
CATTTGGACGCAGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAA
CACAACGTTGAAACGTGTTGCCATCGACATACCTTGTCTGATGTTACCAT
GAAATGTGTGTCGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGA
CGCATTCGAGACTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAG
ATAGTGTCTTCAAATATAGTTTACCTATCATAAAGATGACGGAGACAACA
ACCTAAATGAAGAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTA
ATTTGATGTTGTGGATGATAACTGGATTTGTCTTCAAAGGTAAGAATCCA
AAATTCGGGTGTTTTACTATCAGTTTTCTCTTTATATAGAATGTGTAGCC
TGGATGTGAATCTATTGTCCAACTGACTAGGATTTTCTTTAAGTTTATTC
ACTTCGAGGCCAAGCAAAACCAAACATAATTTCTGAGTCCTGATTTTGCT
CAGGGTCAGGGGGTTTCAAATTATGAATACTAGACAACAtcataaaatga
cgtcacagtaTCTCtctaaatattaaaatatttgacgtcaattatttgtC
GTTCAAAATAATCTCTCATTTTGAAATCGACTAGTGGTCTAGTCGATTGT
CCTGTCAGTAGAATAGTATTTAATAGTAATAATTTtgcaatttctttgaa
aatggaATGGTCTGATCAAGTTCAACGTTTTCAGTGCCATtcattgaata
aaaattcattttcttcatctGTTTGGATTCTGTACGAAGATGCAGGAAGA
AGATATTCAAGAAGGTCAGCTTTTGGACATTGTGTCTTTATTGCTGACCA
AGTCTTCAAAAATACTTCCAACCAACAACGTCATGTCTTTGGAGGTGACA
CAACACGTGGATCAACGAGTTCCTTCAAAGCATTGGCAAACAAGAACAAA
TTTGGGTTTATTTCTGATGAATCTTCCGTTTCCTTCAGGAACCGCTCATT
GATTACAGCTGCATGCGGGGAAAGCATCGTTCCATCATTGCCACTACACG
AAAGGCGATACAGTCAACCTTCAGACGGAATTGATGAGTTGACTTCCGCC
TTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGC
ACCCATCGTGCAAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCG
TGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCACTTATCGCGCAATCC
ACAACACCAGTTGAAAATTCATTAACAGCTAATGAGATAACCACAGCATT
CTCTTCAACTATAAGTGACCACACTACCACAATCACCACCGGACACGCTT
TACCCGACTTCGAATCCACCGACCTCATTGATGCTCTTGAACAGGAATCA
GCTGAAGCGATGGGCGGCACCCACGGTGGCGGTCAACCTCTAGTGGCGGG
TGCAATCACAAATGGGTTCTCCTCTAATGAGGAGTACTATCAATTTCTTC
AGCTCATGCTGACTGCTGTCAATCAGGTGAGACATCCATTACAACAGTTg
aaatttcctttaaaagtccTCTGGATTCAACCTGGAAAACGTGCAGCGTT
TTTGACATTccgtgtttttttatatttagatACCGGCAGGTGCTCAAAAT
TGAGGGAAACTCAATTATAAATCTTTTTCGACAAAATACTCccgaaaata
tcttttttaaccCGATTCTTTTCCCATATTTTCTCTTGTAGGGTATTGAA
TTTAATCTTGTTTAAAATGATTCATTTTTCAGCTGCAACAAGAACTCTTG
ATGGAAGAGCGTGCTGAACAGGCTGCAAGAGACGCACGGGCCACACGGGC
TCTTCGTGATCTTGCTGCGAACGAAAACCGCGCTCAACCCATTCGACACG
CTCGACGAAGAAGACGTCGCGAAGAAATGGAGGGCCTCGAGAATGATCCT
AACGCCGCTAAACGGCGCCGAAGACTTTAAGTCTTTAAACAAAATGCTTC
GAAGATACCCTCACGCACTCACTCCACCTTTCAAACCAACAATCTATTTT
CTTAACAAACCCAACGTACATCCATCGTCCACTTCCCAATGCAATAATCC
TCTTCTTGAGGCTAAATAATAAGTAACcggagaagaaagaagaaaatcca
ATTCCATACCGAACGAACGAAATTCCAGGAAAACACAACAGTTGACTTCA
ATAAACTAACTTAAATCACGTGACTTCATCTCACCGATATGGTCAGAGCA
AAACCTTCCCATCGAAGCtaaaaatatatcatttataATATATCAATCAT
TTCTATTAATTTGTTCAGTTTTTGCATGATAAGTTTGAACAGTGAAATCC
CTATTATCCTTCATCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067809-exon-scaffold_476-1491911889:192443..192811 | TCONS_00067809-exon-scaffold_476-1491911889:192443..192811 | Clytia hemisphaerica | exon |
| TCONS_00067809-exon-scaffold_476-1510915933:192443..192811 | TCONS_00067809-exon-scaffold_476-1510915933:192443..192811 | Clytia hemisphaerica | exon |
| TCONS_00067809-exon-scaffold_476-1575043694:192443..192811 | TCONS_00067809-exon-scaffold_476-1575043694:192443..192811 | Clytia hemisphaerica | exon |
| TCONS_00067809-exon-scaffold_476-1491911889:194532..195268 | TCONS_00067809-exon-scaffold_476-1491911889:194532..195268 | Clytia hemisphaerica | exon |
| TCONS_00067809-exon-scaffold_476-1510915933:194532..195268 | TCONS_00067809-exon-scaffold_476-1510915933:194532..195268 | Clytia hemisphaerica | exon |
| TCONS_00067809-exon-scaffold_476-1575043694:194532..195268 | TCONS_00067809-exon-scaffold_476-1575043694:194532..195268 | Clytia hemisphaerica | exon |
| TCONS_00067809-exon-scaffold_476-1491911889:195525..196110 | TCONS_00067809-exon-scaffold_476-1491911889:195525..196110 | Clytia hemisphaerica | exon |
| TCONS_00067809-exon-scaffold_476-1510915933:195525..196110 | TCONS_00067809-exon-scaffold_476-1510915933:195525..196110 | Clytia hemisphaerica | exon |
| TCONS_00067809-exon-scaffold_476-1575043694:195525..196110 | TCONS_00067809-exon-scaffold_476-1575043694:195525..196110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:192443..196110 + |
Blast
The following BLAST results are available for this feature:
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