TCONS_00067798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067798
Unique NameTCONS_00067798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067798 ID=TCONS_00067798|Name=TCONS_00067798|organism=Clytia hemisphaerica|type=transcript|length=1497bp
CTGtggaattcaaaacaaaaagggcGTGGAAGTTGACGAGCTCAAAAAGT
GGAAAAAGGCTTTTTCGTGATATCGTAAAAACAATTTGATATATCCATTC
AAAGATGGCGTCTTCAACTGAATTAGTGATGAGTCAGCAAAATTCGTTAG
CATCTCCGAACGACAAAGATAGTCAAAACATGCTTTCAAAACAAACCACA
ATCTCATTACGAGCAATTGAAAGCAATGCATCTACAGCCAGCCAAGACCA
ACAAGAAGGAATCATTAGTAATTTGTCTTCACTTCGCTTCGATTCCGGCA
TTTCAGGTAGAGAGCGGGAATTACTTTTCTTACGGAAACGAAGCCAAATG
ATAACGGTGAATCATGTTGCGCATGCTGTCTTCACAGTCTCGATACTGTC
CGAAATTCGACGTCAACTTTACATTCAACAAAATCCACCCTCTAATgaca
aagaaataaagaaaatgaagcaaCAAAAAGTTGGGCGGATCAAGGTGGGT
GTTATTGGATGTGGGCGGCTTGGTATACACTTGGTTAAATCGCTTTTGGA
GTATACACCCTTAATGTCTGAGGATATCAAGCTGTCTACTAAACGCCCTG
GTGCATTAGTTGAAGATTTTACTTCCCTCGGGGTTGAATGCAAACAAGAC
AACAAATATGCAGCCAGCGAAGTTGATGTGTTGTTTTTCACTTTCCCGCC
AAATCAAATAGTGAAAGTCGCTACGGAGATCAAAGGTCATTTATCTCCAG
GTTGCCTCGTTTATACAGTTTTAACTGGGTTGAGTGCAAGCAGAATAGCA
GGATTAATCGAGCACGATTTAGTTTACAAACCATGTTATGTTTATTGTAA
AGAAGAATATGCAATTGAAAAAGAATGGAGTTATGGTCTAAGTATTGTTG
GTTGTTTAGCTATCAATGATTTTAAGCAGCTGACCATTCCTTTAGTGCCT
CTTGAGGATCTAGCAGCTCGTGTCATTCAAGTGGACCGAACGCTTATACA
GTGTGTTTTCATTCAAGCTTTGAATCTTTGCCATACTTATGCAAACAAGT
TTTTGGGAATTAATGAAAGGTACAAATTAGCCAATCACATTTTGTTTCGT
GGTGAAACAGGTTATGCGCATGACTTCTTGAAGCAAATCAAATTGCCGTT
GAATAAGGAAGGATATTTCAAGATCACAGAAATGCTTAAGAATGGCGAAC
ATCGTCCTTTGAAACTAACAGATGATTCAAGAAAGTTTTGTACACTTTTT
GCAAAACATTATAAATTAATCTTCGATCGTTGGCTCGACTGGACGGAATT
TTCAAAAGACTGAACTTTTGATATAGAGTTTTaaagaaatgttgaaatta
gTTGCAACTTAATGTATTTTTTGGACTCTGGTCAAATCGTCTCATTAGCT
TTACAAAAATTCAAGTTACCAAAGTATTGCAAAATCATTTAATATCTTAA
TCTTAAGAATTCAACACCCTTTCTAACGGTATTAACTTAAGGTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00067798-protein

>TCONS_00067798-protein ID=TCONS_00067798-protein|Name=TCONS_00067798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
MASSTELVMSQQNSLASPNDKDSQNMLSKQTTISLRAIESNASTASQDQQ
EGIISNLSSLRFDSGISGRERELLFLRKRSQMITVNHVAHAVFTVSILSE
IRRQLYIQQNPPSNDKEIKKMKQQKVGRIKVGVIGCGRLGIHLVKSLLEY
TPLMSEDIKLSTKRPGALVEDFTSLGVECKQDNKYAASEVDVLFFTFPPN
QIVKVATEIKGHLSPGCLVYTVLTGLSASRIAGLIEHDLVYKPCYVYCKE
EYAIEKEWSYGLSIVGCLAINDFKQLTIPLVPLEDLAARVIQVDRTLIQC
VFIQALNLCHTYANKFLGINERYKLANHILFRGETGYAHDFLKQIKLPLN
KEGYFKITEMLKNGEHRPLKLTDDSRKFCTLFAKHYKLIFDRWLDWTEFS
KD
Run BLAST on NCBI

transcript from alignment at scaffold_476:66003..68476+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067798 ID=TCONS_00067798|Name=TCONS_00067798|organism=Clytia hemisphaerica|type=transcript|length=2474bp|location=Sequence derived from alignment at scaffold_476:66003..68476+ (Clytia hemisphaerica)
CTGtggaattcaaaacaaaaagggcGTGGAAGTTGACGAGCTCAAAAAGT
GGAAAAAGGCTTTTTCGTGATATCGTAAAAACAATTTGGTAAGTATATAT
TGTGTACATACGGCATCTGTTTATCAACAACAGCTGTAAGGTTCAAAGGA
AAAGTTGTTTCTTTGATTGATGCCTACAGTTGACGCTCATCGAAGAAGgg
agtgtatcgaatagtagaacttcgaattagaaagcgtcaactgtagCAAC
AACATTTTGTTTATTGCTTAATACACCTTtgcgaccgtagccgccaattg
tcgtgcgggcattttttgtccgttttaccaccctaaaaccgtcccaaatc
ccagtctttttttcgacaatagacaatagaaaaggtgtaaaaaaaaggat
tggatcgagtttagggggataattaaataataaattggCACGCGCgagac
cgcgcgactacggtcgaaaaggtgtattgctgtttttttttaccCAAACT
TTGCGTGCTTCTTTTAAAAATGATAGGCTTAATGAAACCTGAACCGTTAC
ATTTTGTAATGTGGTATGAAAGCTAACATCCATACAAAGTTTATGTTGCT
TTGGTTACCAAAAAGTAGATTGTTTGCAATTTGATATTATGTTTTCCTCC
TCTCATTGGTGTCACATCGTCATATTATATGGTACGATATGAGACATTAA
CATAAACATCTGAATTTGATTGTACTCATTGCTACAGTGAAACCCAAATG
GGAAGCAATAAACTTATAAGATAAAGTAGAAATTGCAGACTTGGAAAAAT
TTAGAAAGTCtactttatttttacaaaaaaaaatcccGGGAAGAGGGGCA
CTAGGGTTACTATGGTATAATGTGACATTCGAGCCTAACCATGACTATCA
GGGAGCTTATAAGCTAAATGTATATATTAtcacaaaaaagtattttaaag
aTTCTCCAAATTTTTGTTGGAAAGAATTTCTAAATATTCCAAATTCCAAA
AAGCTTTTGACTAGCTTGTGTAAGTTTACATCATCAGTACATATCTCTTG
CTTTGTTATTTATAGATATATCCATTCAAAGATGGCGTCTTCAACTGAAT
TAGTGATGAGTCAGCAAAATTCGTTAGCATCTCCGAACGACAAAGATAGT
CAAAACATGCTTTCAAAACAAACCACAATCTCATTACGAGCAATTGAAAG
CAATGCATCTACAGCCAGCCAAGACCAACAAGAAGGAATCATTAGTAATT
TGTCTTCACTTCGCTTCGATTCCGGCATTTCAGGTAGAGAGCGGGAATTA
CTTTTCTTACGGAAACGAAGCCAAATGATAACGGTGAATCATGTTGCGCA
TGCTGTCTTCACAGTCTCGATACTGTCCGAAATTCGACGTCAACTTTACA
TTCAACAAAATCCACCCTCTAATgacaaagaaataaagaaaatgaagcaa
CAAAAAGTTGGGCGGATCAAGGTGGGTGTTATTGGATGTGGGCGGCTTGG
TATACACTTGGTTAAATCGCTTTTGGAGTATACACCCTTAATGTCTGAGG
ATATCAAGCTGTCTACTAAACGCCCTGGTGCATTAGTTGAAGATTTTACT
TCCCTCGGGGTTGAATGCAAACAAGACAACAAATATGCAGCCAGCGAAGT
TGATGTGTTGTTTTTCACTTTCCCGCCAAATCAAATAGTGAAAGTCGCTA
CGGAGATCAAAGGTCATTTATCTCCAGGTTGCCTCGTTTATACAGTTTTA
ACTGGGTTGAGTGCAAGCAGAATAGCAGGATTAATCGAGCACGATTTAGT
TTACAAACCATGTTATGTTTATTGTAAAGAAGAATATGCAATTGAAAAAG
AATGGAGTTATGGTCTAAGTATTGTTGGTTGTTTAGCTATCAATGATTTT
AAGCAGCTGACCATTCCTTTAGTGCCTCTTGAGGATCTAGCAGCTCGTGT
CATTCAAGTGGACCGAACGCTTATACAGTGTGTTTTCATTCAAGCTTTGA
ATCTTTGCCATACTTATGCAAACAAGTTTTTGGGAATTAATGAAAGGTAC
AAATTAGCCAATCACATTTTGTTTCGTGGTGAAACAGGTTATGCGCATGA
CTTCTTGAAGCAAATCAAATTGCCGTTGAATAAGGAAGGATATTTCAAGA
TCACAGAAATGCTTAAGAATGGCGAACATCGTCCTTTGAAACTAACAGAT
GATTCAAGAAAGTTTTGTACACTTTTTGCAAAACATTATAAATTAATCTT
CGATCGTTGGCTCGACTGGACGGAATTTTCAAAAGACTGAACTTTTGATA
TAGAGTTTTaaagaaatgttgaaattagTTGCAACTTAATGTATTTTTTG
GACTCTGGTCAAATCGTCTCATTAGCTTTACAAAAATTCAAGTTACCAAA
GTATTGCAAAATCATTTAATATCTTAATCTTAAGAATTCAACACCCTTTC
TAACGGTATTAACTTAAGGTTTTG

Coding sequence (CDS) from alignment at scaffold_476:66003..68476+

>TCONS_00067798 ID=TCONS_00067798|Name=TCONS_00067798|organism=Clytia hemisphaerica|type=CDS|length=1209bp|location=Sequence derived from alignment at scaffold_476:66003..68476+ (Clytia hemisphaerica)
ATGGCGTCTTCAACTGAATTAGTGATGAGTCAGCAAAATTCGTTAGCATC
TCCGAACGACAAAGATAGTCAAAACATGCTTTCAAAACAAACCACAATCT
CATTACGAGCAATTGAAAGCAATGCATCTACAGCCAGCCAAGACCAACAA
GAAGGAATCATTAGTAATTTGTCTTCACTTCGCTTCGATTCCGGCATTTC
AGGTAGAGAGCGGGAATTACTTTTCTTACGGAAACGAAGCCAAATGATAA
CGGTGAATCATGTTGCGCATGCTGTCTTCACAGTCTCGATACTGTCCGAA
ATTCGACGTCAACTTTACATTCAACAAAATCCACCCTCTAATgacaaaga
aataaagaaaatgaagcaaCAAAAAGTTGGGCGGATCAAGGTGGGTGTTA
TTGGATGTGGGCGGCTTGGTATACACTTGGTTAAATCGCTTTTGGAGTAT
ACACCCTTAATGTCTGAGGATATCAAGCTGTCTACTAAACGCCCTGGTGC
ATTAGTTGAAGATTTTACTTCCCTCGGGGTTGAATGCAAACAAGACAACA
AATATGCAGCCAGCGAAGTTGATGTGTTGTTTTTCACTTTCCCGCCAAAT
CAAATAGTGAAAGTCGCTACGGAGATCAAAGGTCATTTATCTCCAGGTTG
CCTCGTTTATACAGTTTTAACTGGGTTGAGTGCAAGCAGAATAGCAGGAT
TAATCGAGCACGATTTAGTTTACAAACCATGTTATGTTTATTGTAAAGAA
GAATATGCAATTGAAAAAGAATGGAGTTATGGTCTAAGTATTGTTGGTTG
TTTAGCTATCAATGATTTTAAGCAGCTGACCATTCCTTTAGTGCCTCTTG
AGGATCTAGCAGCTCGTGTCATTCAAGTGGACCGAACGCTTATACAGTGT
GTTTTCATTCAAGCTTTGAATCTTTGCCATACTTATGCAAACAAGTTTTT
GGGAATTAATGAAAGGTACAAATTAGCCAATCACATTTTGTTTCGTGGTG
AAACAGGTTATGCGCATGACTTCTTGAAGCAAATCAAATTGCCGTTGAAT
AAGGAAGGATATTTCAAGATCACAGAAATGCTTAAGAATGGCGAACATCG
TCCTTTGAAACTAACAGATGATTCAAGAAAGTTTTGTACACTTTTTGCAA
AACATTATAAATTAATCTTCGATCGTTGGCTCGACTGGACGGAATTTTCA
AAAGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042344XLOC_042344Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067798-proteinTCONS_00067798-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067798-exon-scaffold_476-1491911889:66003..66090TCONS_00067798-exon-scaffold_476-1491911889:66003..66090Clytia hemisphaericaexon
TCONS_00067798-exon-scaffold_476-1510915933:66003..66090TCONS_00067798-exon-scaffold_476-1510915933:66003..66090Clytia hemisphaericaexon
TCONS_00067798-exon-scaffold_476-1575043694:66003..66090TCONS_00067798-exon-scaffold_476-1575043694:66003..66090Clytia hemisphaericaexon
TCONS_00067798-exon-scaffold_476-1491911889:67068..68476TCONS_00067798-exon-scaffold_476-1491911889:67068..68476Clytia hemisphaericaexon
TCONS_00067798-exon-scaffold_476-1510915933:67068..68476TCONS_00067798-exon-scaffold_476-1510915933:67068..68476Clytia hemisphaericaexon
TCONS_00067798-exon-scaffold_476-1575043694:67068..68476TCONS_00067798-exon-scaffold_476-1575043694:67068..68476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:66003..68476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00637166	0	0	0.00771345	0.00499631	0.0107436	0.885331	0	1.09094	0.752432	0.88478	1.44923	1.15946	0.379355	2.53555	3.48944	1.73694	1.75911	2.2839	1.65457	1.01201	0.935288	1.20013	0.0675711	35.4426	18.4883	0.012046	0.0431258	1.2229	0.0884047
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028939P5C_Rdtase_cat_N
IPR016040NAD(P)-bd_dom
Blast
[Close]
BLAST of TCONS_00067798 vs. Swiss-Prot (Human)
Match: NXRD1 (NADP-dependent oxidoreductase domain-containing protein 1 OS=Homo sapiens GN=NOXRED1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.466e-28
Identity = 74/257 (28.79%), Postives = 124/257 (48.25%), Query Frame = 3 
Query:  261 IISNLSSLRFDSGISGRERELLFLRKRSQMITVNHVAHAVFTVSILSEIRRQLYIQQNPPSNDKEIKKMKQQKVGRIKVGVIGCGRLGIHLVKSLLEYTPLMSEDIKLSTKRPGALVEDFTSLGVECKQDNKYAASEVDVLFFTFPPNQIVKVATEIKGHLSPGCLVYTVLTGLSASRIAGLIEHDLVYKPCYVYCKEEYAIEKEWSYGLSIVGCLAINDFKQLTIPLVPLEDLAARVIQVDRTLIQCVFIQALNLC 1031
            ++ +L SL+F+ G+   +R  L+L+ RS+ + +   AHA F   +L  +R  L   +N  S    I  +        KVG+IG G LG  L  +LL+  P+ +E +++ST+RP  L E    LG++C   N    S  DV+F    P+Q+  +  EI   L    +VY+ +  +   R+  L+ H  + +P Y Y ++  ++   W     ++  L      Q T P  P     A  I ++   ++ VF  ALN+C
Sbjct:    3 MLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASL--NKNQSSRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGE-LQKLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKLLLNHTNILRPQYQYDEDSVSV---WGANKGVIAALQDPTILQATCPYSP-----AGGIILNIKWLEGVFYAALNIC 248
The following BLAST results are available for this feature:
BLAST of TCONS_00067798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NXRD12.466e-2828.79NADP-dependent oxidoreductase domain-containing pr... [more]
back to top